Wall clock time and date at job start Sat Apr 11 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.99992 * 2 1 4 4 C 1.54338 * 109.99305 * 238.96946 * 2 1 3 5 5 H 1.09007 * 110.51111 * 336.97303 * 4 2 1 6 6 N 1.46498 * 111.00560 * 100.12400 * 4 2 1 7 7 C 1.34771 * 120.00128 * 200.24129 * 6 4 2 8 8 O 1.21552 * 120.00010 * 359.97438 * 7 6 4 9 9 C 1.47863 * 120.00034 * 179.97438 * 7 6 4 10 10 C 1.39656 * 120.08775 * 359.72199 * 9 7 6 11 11 C 1.38021 * 120.09781 * 179.71799 * 10 9 7 12 12 C 1.38160 * 120.26997 * 0.56048 * 11 10 9 13 13 C 1.39417 * 120.17434 * 359.71533 * 12 11 10 14 14 C 1.48417 * 120.04922 * 179.97438 * 13 12 11 15 15 N 1.33976 * 125.65240 * 0.02833 * 14 13 12 16 16 C 1.30674 * 109.78174 * 179.97438 * 15 14 13 17 17 N 1.34524 * 108.29434 * 359.97438 * 16 15 14 18 18 H 0.97003 * 126.74611 * 180.02562 * 17 16 15 19 19 N 1.31491 * 125.64643 * 179.71537 * 14 13 12 20 20 C 1.39091 * 119.89879 * 0.02562 * 13 12 11 21 21 C 1.55161 * 103.02156 * 218.66481 * 4 2 1 22 22 C 1.54907 * 101.58173 * 35.30375 * 21 4 2 23 23 N 1.47024 * 109.88790 * 121.09928 * 2 1 3 24 24 C 1.36932 * 125.64878 * 298.39735 * 23 2 1 25 25 H 1.08002 * 119.99770 * 342.78068 * 24 23 2 26 26 C 1.38810 * 120.00476 * 162.77334 * 24 23 2 27 27 N 1.31617 * 119.99714 * 332.10369 * 26 24 23 28 28 Si 1.86797 * 120.00373 * 152.09705 * 26 24 23 29 29 H 1.48493 * 109.47334 * 180.02562 * 28 26 24 30 30 H 1.48502 * 109.47093 * 300.00759 * 28 26 24 31 31 H 1.48501 * 109.46890 * 60.00322 * 28 26 24 32 32 H 1.09002 * 109.46941 * 300.35159 * 1 2 3 33 33 H 1.08997 * 109.47226 * 60.35637 * 1 2 3 34 34 H 1.09004 * 109.47080 * 180.35391 * 1 2 3 35 35 H 0.97000 * 119.99508 * 20.23223 * 6 4 2 36 36 H 1.08003 * 119.94868 * 359.97438 * 10 9 7 37 37 H 1.07995 * 119.86024 * 180.25572 * 11 10 9 38 38 H 1.07998 * 119.91130 * 179.70089 * 12 11 10 39 39 H 1.08003 * 125.85661 * 179.97438 * 16 15 14 40 40 H 1.07999 * 120.13345 * 179.97438 * 20 13 12 41 41 H 1.08998 * 111.00115 * 277.22783 * 21 4 2 42 42 H 1.09002 * 111.00432 * 153.38147 * 21 4 2 43 43 H 1.08997 * 110.36428 * 204.15469 * 22 21 4 44 44 H 1.09003 * 110.36892 * 81.82910 * 22 21 4 45 45 H 0.97004 * 120.00513 * 353.95988 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4405 -1.6198 6 7 2.4631 0.1940 -2.2893 7 6 2.5607 -0.2206 -3.5679 8 8 2.3128 -1.3760 -3.8528 9 6 2.9694 0.7300 -4.6242 10 6 3.2491 2.0592 -4.2998 11 6 3.6362 2.9453 -5.2847 12 6 3.7382 2.5265 -6.5973 13 6 3.4562 1.2035 -6.9347 14 6 3.5661 0.7568 -8.3458 15 7 3.9255 1.5255 -9.3825 16 6 3.9201 0.8175 -10.4809 17 7 3.5529 -0.4391 -10.1715 18 1 3.4616 -1.1848 -10.7851 19 7 3.3324 -0.4606 -8.7846 20 6 3.0706 0.3032 -5.9471 21 6 3.2864 -1.5183 -0.6916 22 6 2.8100 -1.8826 0.7366 23 7 2.0301 -0.7141 1.1838 24 6 1.8040 -0.3566 2.4862 25 1 1.4640 0.6413 2.7209 26 6 2.0115 -1.2766 3.5046 27 7 1.8827 -2.5643 3.2645 28 14 2.4736 -0.6873 5.2159 29 1 2.6384 -1.8578 6.1148 30 1 3.7494 0.0699 5.1510 31 1 1.4009 0.1944 5.7422 32 1 -0.3633 0.5193 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 -0.3633 -1.0277 0.0063 35 1 2.6611 1.1159 -2.0618 36 1 3.1663 2.3933 -3.2761 37 1 3.8555 3.9713 -5.0289 38 1 4.0370 3.2259 -7.3641 39 1 4.1680 1.1792 -11.4679 40 1 2.8508 -0.7224 -6.2043 41 1 4.1670 -0.8767 -0.6581 42 1 3.4808 -2.4154 -1.2794 43 1 3.6656 -2.0412 1.3929 44 1 2.1802 -2.7719 0.7112 45 1 1.5583 -2.8668 2.4018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088790637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:30 Heat of formation + Delta-G solvation = 79.166525 kcal Electronic energy + Delta-G solvation = -28350.717256 eV Core-core repulsion = 24369.530581 eV Total energy + Delta-G solvation = -3981.186675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.07674 -41.45063 -39.95941 -38.95518 -35.88234 -34.47234 -33.82641 -32.91025 -32.31918 -32.12452 -31.01483 -30.17706 -26.90858 -25.73141 -25.04714 -24.78770 -23.21907 -22.33651 -21.99782 -21.67789 -20.92591 -19.52974 -19.24941 -18.54220 -17.74442 -17.03138 -16.53292 -16.41532 -16.36958 -16.19483 -15.88437 -15.73047 -15.32177 -15.14961 -14.98790 -14.72164 -14.59893 -14.41808 -13.83083 -13.54217 -13.43172 -13.20029 -13.04801 -12.79814 -12.60103 -12.47574 -12.36832 -12.23428 -12.15719 -11.87999 -11.70024 -11.54813 -11.51998 -11.20989 -11.10173 -11.06310 -10.50100 -10.25684 -9.97525 -9.66033 -9.01840 -8.28286 -5.30527 -0.35967 -0.03040 0.80733 1.59952 1.64217 1.68268 1.72704 1.86346 1.95217 2.05713 2.67632 2.87857 2.95626 3.22136 3.38321 3.53710 3.67774 3.69695 3.75886 3.90761 3.99393 4.08793 4.17418 4.22631 4.32057 4.42362 4.46816 4.49712 4.62938 4.71528 4.81494 4.88739 4.91370 5.00456 5.04642 5.06322 5.11501 5.19585 5.25614 5.29825 5.36645 5.41931 5.49723 5.72678 5.78152 6.21203 6.33124 6.46068 6.90568 6.97563 7.11897 7.72468 8.30755 9.03711 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028759 B = 0.002008 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.369983 B =13937.597962 C =14387.995666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.152 3.848 3 H 0.060 0.940 4 C 0.153 3.847 5 H 0.077 0.923 6 N -0.695 5.695 7 C 0.559 3.441 8 O -0.581 6.581 9 C -0.148 4.148 10 C -0.061 4.061 11 C -0.115 4.115 12 C -0.045 4.045 13 C -0.041 4.041 14 C 0.253 3.747 15 N -0.563 5.563 16 C 0.283 3.717 17 N -0.475 5.475 18 H 0.459 0.541 19 N -0.345 5.345 20 C -0.042 4.042 21 C -0.129 4.129 22 C 0.150 3.850 23 N -0.612 5.612 24 C -0.332 4.332 25 H 0.068 0.932 26 C -0.084 4.084 27 N -0.949 5.949 28 Si 1.116 2.884 29 H -0.297 1.297 30 H -0.279 1.279 31 H -0.273 1.273 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.415 0.585 36 H 0.158 0.842 37 H 0.176 0.824 38 H 0.156 0.844 39 H 0.281 0.719 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.027 0.973 44 H 0.002 0.998 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 14.590 -29.445 33.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.045 3.955 3 H 0.078 0.922 4 C 0.047 3.953 5 H 0.095 0.905 6 N -0.347 5.347 7 C 0.348 3.652 8 O -0.461 6.461 9 C -0.151 4.151 10 C -0.081 4.081 11 C -0.133 4.133 12 C -0.065 4.065 13 C -0.043 4.043 14 C -0.027 4.027 15 N -0.292 5.292 16 C -0.015 4.015 17 N -0.194 5.194 18 H 0.309 0.691 19 N -0.175 5.175 20 C -0.063 4.063 21 C -0.169 4.169 22 C 0.024 3.976 23 N -0.339 5.339 24 C -0.460 4.460 25 H 0.085 0.915 26 C -0.279 4.279 27 N -0.592 5.592 28 Si 0.941 3.059 29 H -0.224 1.224 30 H -0.205 1.205 31 H -0.199 1.199 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.254 0.746 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.174 0.826 39 H 0.296 0.704 40 H 0.135 0.865 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.019 0.981 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.821 13.094 -27.569 31.071 hybrid contribution -0.757 -0.609 -1.851 2.090 sum 5.064 12.485 -29.420 32.359 Atomic orbital electron populations 1.22099 0.96885 1.00329 1.01150 1.21235 0.93110 0.95588 0.85521 0.92207 1.21695 0.95995 0.90983 0.86629 0.90479 1.45670 1.68671 1.14473 1.05897 1.18617 0.76468 0.87327 0.82832 1.90762 1.51752 1.20743 1.82883 1.19671 1.07621 0.95180 0.92674 1.21804 0.93855 0.90617 1.01785 1.21487 0.99004 1.01689 0.91098 1.21666 0.93453 0.93424 0.97966 1.17493 1.05171 0.95001 0.86662 1.22389 0.97970 0.87598 0.94729 1.70474 1.25807 1.34886 0.98001 1.27168 0.92302 0.81008 1.01010 1.48090 1.52293 1.13211 1.05843 0.69142 1.78241 1.26742 1.21286 0.91239 1.21115 0.94406 0.99456 0.91323 1.23057 0.98142 1.00511 0.95181 1.21361 0.93359 0.89851 0.93015 1.44825 1.58164 1.29545 1.01326 1.19942 1.46280 0.97211 0.82568 0.91456 1.27140 1.00489 0.93694 1.06620 1.70895 1.47384 1.15948 1.24995 0.82837 0.77132 0.74553 0.71391 1.22352 1.20539 1.19908 0.93653 0.90838 0.95264 0.74587 0.82421 0.80618 0.82641 0.70387 0.86534 0.90018 0.91133 0.95501 0.98063 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 9.14 71.98 0.66 -4.83 16 2 C 0.15 5.93 3.49 45.34 0.16 6.09 16 3 H 0.06 2.12 7.70 -2.39 -0.02 2.10 16 4 C 0.15 5.45 2.76 46.19 0.13 5.58 16 5 H 0.08 3.07 7.39 -2.38 -0.02 3.05 16 6 N -0.70 -19.27 5.16 -439.74 -2.27 -21.54 16 7 C 0.56 17.19 7.77 86.79 0.67 17.87 16 8 O -0.58 -23.11 16.07 -3.88 -0.06 -23.17 16 9 C -0.15 -3.61 5.87 -20.11 -0.12 -3.73 16 10 C -0.06 -0.97 9.54 22.56 0.22 -0.76 16 11 C -0.12 -1.41 10.02 22.20 0.22 -1.19 16 12 C -0.04 -0.72 9.68 22.54 0.22 -0.50 16 13 C -0.04 -0.91 5.87 -20.08 -0.12 -1.03 16 14 C 0.25 5.76 7.77 137.47 1.07 6.83 16 15 N -0.56 -9.86 10.81 -193.08 -2.09 -11.95 16 16 C 0.28 2.39 13.11 180.38 2.36 4.75 16 17 N -0.47 -5.44 7.44 -60.52 -0.45 -5.89 16 18 H 0.46 1.65 8.96 -213.10 -1.91 -0.27 16 19 N -0.34 -7.94 12.42 -52.35 -0.65 -8.59 16 20 C -0.04 -1.10 9.22 22.75 0.21 -0.89 16 21 C -0.13 -5.01 6.77 31.99 0.22 -4.79 16 22 C 0.15 7.34 5.30 86.85 0.46 7.80 16 23 N -0.61 -30.54 3.02 -668.24 -2.02 -32.56 16 24 C -0.33 -18.33 9.62 84.03 0.81 -17.52 16 25 H 0.07 3.63 7.97 -2.91 -0.02 3.61 16 26 C -0.08 -4.82 5.09 84.86 0.43 -4.39 16 27 N -0.95 -59.35 12.93 21.65 0.28 -59.07 16 28 Si 1.12 51.18 30.00 68.60 2.06 53.24 16 29 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 30 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 31 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 32 H 0.04 1.80 8.02 -2.39 -0.02 1.78 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.42 8.53 6.36 -92.71 -0.59 7.95 16 36 H 0.16 1.62 6.39 -2.91 -0.02 1.60 16 37 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 38 H 0.16 1.98 7.82 -2.91 -0.02 1.96 16 39 H 0.28 -1.32 8.06 -2.91 -0.02 -1.34 16 40 H 0.12 3.65 7.42 -2.91 -0.02 3.63 16 41 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.03 1.43 7.95 -2.39 -0.02 1.41 16 44 H 0.00 0.09 6.80 -2.39 -0.02 0.07 16 45 H 0.25 16.22 6.05 -92.71 -0.56 15.66 16 Total: -1.00 -85.89 377.72 1.16 -84.73 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -1.24 Total: 15.51 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 7.60 Total: 9.28 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -7.20 Total: -139.59 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.06 Total: 53.24 kcal Total: -85.89 1.16 -84.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088790637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.897 kcal (2) G-P(sol) polarization free energy of solvation -85.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds