Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.87402 * 2 1 4 4 C 1.54327 * 110.01012 * 238.90489 * 2 1 3 5 5 H 1.08996 * 110.71695 * 336.67666 * 4 2 1 6 6 N 1.46497 * 110.71993 * 99.77315 * 4 2 1 7 7 C 1.34775 * 119.99911 * 204.99469 * 6 4 2 8 8 O 1.21513 * 120.00033 * 0.02562 * 7 6 4 9 9 C 1.48178 * 119.99967 * 180.02562 * 7 6 4 10 10 C 1.39127 * 119.69643 * 180.02562 * 9 7 6 11 11 C 1.39288 * 118.97932 * 179.97438 * 10 9 7 12 12 N 1.39937 * 120.82369 * 179.97438 * 11 10 9 13 13 C 1.35820 * 126.10342 * 180.02562 * 12 11 10 14 14 C 1.35287 * 107.61709 * 179.97438 * 13 12 11 15 15 C 1.39940 * 107.97165 * 0.02562 * 14 13 12 16 16 N 1.30833 * 108.36328 * 359.75278 * 15 14 13 17 17 C 1.39279 * 118.35099 * 359.97438 * 11 10 9 18 18 C 1.38339 * 119.28035 * 0.02562 * 17 11 10 19 19 N 1.31594 * 120.97357 * 359.72045 * 18 17 11 20 20 C 1.55155 * 102.93990 * 218.31502 * 4 2 1 21 21 C 1.54910 * 101.58186 * 35.50139 * 20 4 2 22 22 N 1.47015 * 109.88376 * 121.01554 * 2 1 3 23 23 C 1.36936 * 125.65322 * 298.49370 * 22 2 1 24 24 H 1.08005 * 119.99808 * 359.97438 * 23 22 2 25 25 C 1.38810 * 120.00640 * 179.97438 * 23 22 2 26 26 N 1.31625 * 119.99418 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00271 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47300 * 59.99773 * 27 25 23 29 29 H 1.48497 * 109.46861 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.46683 * 299.99757 * 27 25 23 31 31 H 1.08994 * 109.46997 * 300.43757 * 1 2 3 32 32 H 1.08998 * 109.46806 * 60.43424 * 1 2 3 33 33 H 1.08997 * 109.46615 * 180.43487 * 1 2 3 34 34 H 0.97001 * 120.00432 * 25.00685 * 6 4 2 35 35 H 1.08006 * 120.51091 * 0.02562 * 10 9 7 36 36 H 1.07997 * 126.18937 * 359.97438 * 13 12 11 37 37 H 1.08006 * 126.01320 * 179.97438 * 14 13 12 38 38 H 1.07995 * 125.82267 * 180.02562 * 15 14 13 39 39 H 1.08006 * 120.35927 * 179.97438 * 17 11 10 40 40 H 1.08001 * 119.51247 * 179.97438 * 18 17 11 41 41 H 1.08999 * 111.00406 * 277.42751 * 20 4 2 42 42 H 1.09005 * 111.00498 * 153.57267 * 20 4 2 43 43 H 1.08998 * 110.36709 * 204.15043 * 21 20 4 44 44 H 1.09005 * 110.36466 * 81.82577 * 21 20 4 45 45 H 0.96997 * 119.99243 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7489 -1.2417 5 1 1.3104 -1.4471 -1.6178 6 7 2.4541 0.1970 -2.2880 7 6 2.4584 -0.1894 -3.5792 8 8 2.1334 -1.3222 -3.8755 9 6 2.8594 0.7672 -4.6374 10 6 2.8610 0.3618 -5.9683 11 6 3.2401 1.2733 -6.9510 12 7 3.2562 0.9066 -8.3013 13 6 3.6061 1.7045 -9.3432 14 6 3.4883 0.9742 -10.4759 15 6 3.0535 -0.3074 -10.1200 16 7 2.9191 -0.3507 -8.8193 17 6 3.6026 2.5588 -6.5561 18 6 3.5756 2.8868 -5.2125 19 7 3.2081 2.0051 -4.3074 20 6 3.2919 -1.5107 -0.6895 21 6 2.8177 -1.8762 0.7393 22 7 2.0301 -0.7124 1.1848 23 6 1.8024 -0.3541 2.4867 24 1 1.2098 0.5208 2.7103 25 6 2.3330 -1.1152 3.5192 26 7 3.0547 -2.1817 3.2467 27 14 2.0217 -0.6267 5.2951 28 1 0.5608 -0.6306 5.5608 29 1 2.6925 -1.5947 6.1995 30 1 2.5651 0.7340 5.5366 31 1 -0.3633 0.5206 0.8860 32 1 -0.3633 0.5071 -0.8938 33 1 -0.3632 -1.0276 0.0078 34 1 2.7133 1.1013 -2.0516 35 1 2.5720 -0.6440 -6.2356 36 1 3.9213 2.7355 -9.2790 37 1 3.6929 1.3198 -11.4785 38 1 2.8656 -1.1233 -10.8022 39 1 3.9024 3.2914 -7.2910 40 1 3.8564 3.8824 -4.9021 41 1 4.1682 -0.8633 -0.6566 42 1 3.4922 -2.4073 -1.2760 43 1 3.6743 -2.0284 1.3959 44 1 2.1937 -2.7697 0.7149 45 1 3.4252 -2.7137 3.9682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088851162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = 98.083200 kcal Electronic energy + Delta-G solvation = -28449.069538 eV Core-core repulsion = 24468.703151 eV Total energy + Delta-G solvation = -3980.366387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64570 -41.61758 -40.42897 -39.10409 -35.83748 -35.39167 -33.86340 -32.77607 -32.07982 -31.46901 -30.82022 -30.41043 -27.08685 -25.93284 -25.46780 -24.94607 -23.05857 -22.10747 -21.83240 -21.59250 -21.19131 -19.65474 -18.73154 -18.27312 -17.56094 -17.03081 -16.95898 -16.63252 -16.50917 -16.09522 -16.01437 -15.71400 -15.48476 -15.10748 -14.98018 -14.60896 -14.50649 -14.35977 -14.01527 -13.73544 -13.70150 -13.25777 -13.17430 -12.95159 -12.71990 -12.60936 -12.29090 -12.16699 -12.07886 -12.03291 -11.83006 -11.58373 -11.48843 -11.43511 -10.81225 -10.71582 -10.50584 -10.37877 -10.07757 -9.50986 -8.90005 -7.73781 -5.19045 -0.66126 -0.30682 1.03157 1.17992 1.48856 1.52136 1.58195 1.63090 1.81122 1.89123 2.52269 2.70516 2.99048 3.25060 3.36521 3.52596 3.57747 3.74634 3.82767 3.88392 3.91560 4.01973 4.07034 4.17699 4.36133 4.48340 4.53312 4.57741 4.60624 4.63947 4.69990 4.77986 4.85838 4.91320 5.01796 5.02060 5.08778 5.29905 5.31806 5.49837 5.55491 5.58696 5.59236 5.79619 5.99453 6.30517 6.31927 6.52729 6.67921 7.03887 7.11560 7.78916 8.42945 9.28141 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.002030 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.110011 B =13791.015852 C =14169.764008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.152 3.848 3 H 0.052 0.948 4 C 0.148 3.852 5 H 0.084 0.916 6 N -0.681 5.681 7 C 0.567 3.433 8 O -0.569 6.569 9 C 0.096 3.904 10 C -0.136 4.136 11 C 0.193 3.807 12 N -0.348 5.348 13 C 0.054 3.946 14 C -0.255 4.255 15 C 0.058 3.942 16 N -0.344 5.344 17 C -0.153 4.153 18 C 0.136 3.864 19 N -0.479 5.479 20 C -0.139 4.139 21 C 0.158 3.842 22 N -0.613 5.613 23 C -0.227 4.227 24 H 0.086 0.914 25 C -0.071 4.071 26 N -0.951 5.951 27 Si 0.981 3.019 28 H -0.280 1.280 29 H -0.297 1.297 30 H -0.275 1.275 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.419 0.581 35 H 0.132 0.868 36 H 0.225 0.775 37 H 0.189 0.811 38 H 0.216 0.784 39 H 0.196 0.804 40 H 0.220 0.780 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.080 0.920 44 H -0.013 1.013 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 15.733 -29.389 33.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.069 0.931 4 C 0.043 3.957 5 H 0.102 0.898 6 N -0.331 5.331 7 C 0.352 3.648 8 O -0.448 6.448 9 C -0.041 4.041 10 C -0.160 4.160 11 C 0.091 3.909 12 N -0.125 5.125 13 C -0.085 4.085 14 C -0.283 4.283 15 C -0.130 4.130 16 N -0.162 5.162 17 C -0.176 4.176 18 C -0.024 4.024 19 N -0.192 5.192 20 C -0.179 4.179 21 C 0.033 3.967 22 N -0.338 5.338 23 C -0.356 4.356 24 H 0.104 0.896 25 C -0.263 4.263 26 N -0.601 5.601 27 Si 0.809 3.191 28 H -0.206 1.206 29 H -0.224 1.224 30 H -0.201 1.201 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.258 0.742 35 H 0.150 0.850 36 H 0.242 0.758 37 H 0.206 0.794 38 H 0.232 0.768 39 H 0.213 0.787 40 H 0.236 0.764 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.005 0.995 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.646 14.375 -27.415 31.068 hybrid contribution 0.028 -0.207 -0.267 0.339 sum 2.674 14.169 -27.681 31.212 Atomic orbital electron populations 1.22120 0.96431 1.00810 1.01206 1.21167 0.93591 0.95066 0.85649 0.93065 1.21851 0.96627 0.90816 0.86441 0.89839 1.45680 1.66073 1.16576 1.04758 1.18177 0.77406 0.86316 0.82881 1.90779 1.50050 1.21133 1.82863 1.20593 1.00137 0.92126 0.91247 1.21621 1.01043 1.01439 0.91886 1.17878 0.97730 0.94572 0.80686 1.46083 1.52423 1.09806 1.04177 1.23657 0.99242 0.99818 0.85759 1.22147 1.11641 0.93592 1.00894 1.24821 0.96197 1.00065 0.91918 1.77582 1.24684 1.00702 1.13197 1.22545 1.01267 0.93900 0.99893 1.23522 0.91846 0.99822 0.87230 1.67603 1.10709 1.00948 1.39927 1.23218 0.97510 0.99920 0.97218 1.21675 0.95793 0.87867 0.91373 1.44706 1.59553 1.28712 1.00820 1.19361 1.26373 1.08202 0.81625 0.89625 1.25647 1.00844 0.97759 1.02049 1.70040 1.40277 1.19007 1.30790 0.85111 0.77487 0.77132 0.79349 1.20616 1.22355 1.20051 0.93061 0.91393 0.94416 0.74248 0.85037 0.75849 0.79356 0.76786 0.78660 0.76382 0.91145 0.91497 0.90226 0.99495 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 9.15 71.98 0.66 -4.84 16 2 C 0.15 6.22 3.47 45.35 0.16 6.38 16 3 H 0.05 1.99 7.72 -2.39 -0.02 1.97 16 4 C 0.15 5.67 2.84 46.18 0.13 5.80 16 5 H 0.08 3.44 7.26 -2.39 -0.02 3.43 16 6 N -0.68 -21.89 5.17 -439.47 -2.27 -24.16 16 7 C 0.57 19.10 7.81 86.89 0.68 19.78 16 8 O -0.57 -23.29 15.96 -3.76 -0.06 -23.35 16 9 C 0.10 2.59 6.75 41.86 0.28 2.88 16 10 C -0.14 -3.60 9.26 22.74 0.21 -3.39 16 11 C 0.19 3.65 6.73 38.35 0.26 3.91 16 12 N -0.35 -6.37 3.81 -186.87 -0.71 -7.08 16 13 C 0.05 0.51 10.86 83.39 0.91 1.41 16 14 C -0.26 -2.30 10.80 22.00 0.24 -2.06 16 15 C 0.06 0.83 12.02 85.25 1.02 1.85 16 16 N -0.34 -7.82 11.97 -56.98 -0.68 -8.50 16 17 C -0.15 -1.49 9.53 22.54 0.21 -1.27 16 18 C 0.14 1.54 11.17 84.75 0.95 2.48 16 19 N -0.48 -9.98 9.54 -185.13 -1.77 -11.75 16 20 C -0.14 -5.81 6.77 31.99 0.22 -5.60 16 21 C 0.16 8.17 5.89 86.86 0.51 8.68 16 22 N -0.61 -31.40 3.13 -668.24 -2.09 -33.49 16 23 C -0.23 -12.50 9.87 84.03 0.83 -11.68 16 24 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 25 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 26 N -0.95 -57.29 10.09 21.65 0.22 -57.07 16 27 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 28 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 30 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 31 H 0.05 1.95 8.02 -2.39 -0.02 1.93 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.42 11.79 7.70 -92.71 -0.71 11.08 16 35 H 0.13 4.20 7.38 -2.91 -0.02 4.18 16 36 H 0.23 -0.21 7.13 -2.91 -0.02 -0.23 16 37 H 0.19 0.39 8.06 -2.91 -0.02 0.36 16 38 H 0.22 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.20 -0.11 6.88 -2.91 -0.02 -0.13 16 40 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 43 H 0.08 4.60 5.88 -2.39 -0.01 4.59 16 44 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -80.64 377.94 2.71 -77.93 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.32 Total: 18.89 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.73 Total: 20.78 kcal Atomic # 7 Polarization: -134.74 SS G_CDS: -7.30 Total: -142.05 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.06 Total: -23.35 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -80.64 2.71 -77.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088851162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.015 kcal (2) G-P(sol) polarization free energy of solvation -80.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds