Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.99784 * 2 1 4 4 C 1.54337 * 109.98926 * 238.95930 * 2 1 3 5 5 H 1.08998 * 110.66799 * 337.05065 * 4 2 1 6 6 N 1.46503 * 110.84802 * 100.20020 * 4 2 1 7 7 C 1.34779 * 119.99908 * 200.14679 * 6 4 2 8 8 O 1.21599 * 120.00207 * 359.97438 * 7 6 4 9 9 C 1.47422 * 119.99673 * 179.97438 * 7 6 4 10 10 C 1.41366 * 126.41077 * 0.02905 * 9 7 6 11 11 N 1.30449 * 108.07656 * 179.97438 * 10 9 7 12 12 N 1.39934 * 108.91933 * 359.97438 * 11 10 9 13 13 C 1.39910 * 125.77992 * 180.02562 * 12 11 10 14 14 C 1.39326 * 120.85528 * 179.70339 * 13 12 11 15 15 C 1.38011 * 119.07748 * 179.75252 * 14 13 12 16 16 N 1.31941 * 120.83050 * 0.52157 * 15 14 13 17 17 C 1.31936 * 121.88787 * 359.72955 * 16 15 14 18 18 C 1.38011 * 120.83167 * 0.02562 * 17 16 15 19 19 C 1.34616 * 108.44593 * 359.73283 * 12 11 10 20 20 C 1.55155 * 103.01999 * 218.66603 * 4 2 1 21 21 C 1.54906 * 101.58202 * 35.31209 * 20 4 2 22 22 N 1.47018 * 109.88134 * 121.09861 * 2 1 3 23 23 C 1.36935 * 125.64732 * 298.39226 * 22 2 1 24 24 H 1.08005 * 119.99877 * 359.71120 * 23 22 2 25 25 C 1.38811 * 120.00369 * 179.44633 * 23 22 2 26 26 N 1.31617 * 119.99773 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47045 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47426 * 119.99572 * 27 25 23 30 30 H 1.48501 * 109.46833 * 239.99815 * 27 25 23 31 31 H 1.09003 * 109.47492 * 300.36087 * 1 2 3 32 32 H 1.09006 * 109.47327 * 60.35581 * 1 2 3 33 33 H 1.09002 * 109.47636 * 180.35673 * 1 2 3 34 34 H 0.97000 * 119.99733 * 20.14706 * 6 4 2 35 35 H 1.07998 * 125.95985 * 359.95660 * 10 9 7 36 36 H 1.07998 * 120.46226 * 359.97068 * 14 13 12 37 37 H 1.07996 * 119.58699 * 180.24882 * 15 14 13 38 38 H 1.08001 * 119.58316 * 179.97438 * 17 16 15 39 39 H 1.07996 * 120.46181 * 180.02562 * 18 17 16 40 40 H 1.07993 * 126.31094 * 180.26538 * 19 12 11 41 41 H 1.08996 * 111.00485 * 277.23437 * 20 4 2 42 42 H 1.09002 * 111.03305 * 153.40130 * 20 4 2 43 43 H 1.09004 * 110.36614 * 204.15475 * 21 20 4 44 44 H 1.08999 * 110.37158 * 81.82525 * 21 20 4 45 45 H 0.97004 * 120.00382 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 1.3065 -1.4406 -1.6225 6 7 2.4636 0.1967 -2.2863 7 6 2.5637 -0.2148 -3.5658 8 8 2.3175 -1.3702 -3.8540 9 6 2.9718 0.7359 -4.6160 10 6 3.2889 2.1015 -4.4345 11 7 3.6016 2.6025 -5.5976 12 7 3.5022 1.5974 -6.5662 13 6 3.7599 1.7500 -7.9328 14 6 3.6340 0.6735 -8.8083 15 6 3.8923 0.8665 -10.1502 16 7 4.2638 2.0484 -10.6042 17 6 4.3990 3.0904 -9.8063 18 6 4.1547 2.9811 -8.4524 19 6 3.1230 0.4572 -5.9594 20 6 3.2862 -1.5184 -0.6914 21 6 2.8098 -1.8826 0.7368 22 7 2.0299 -0.7141 1.1839 23 6 1.8037 -0.3565 2.4862 24 1 1.2162 0.5215 2.7108 25 6 2.3249 -1.1253 3.5177 26 7 3.0361 -2.1985 3.2440 27 14 2.0158 -0.6379 5.2943 28 1 1.1935 0.5981 5.3325 29 1 1.2951 -1.7340 5.9901 30 1 3.3134 -0.3899 5.9724 31 1 -0.3634 0.5194 0.8867 32 1 -0.3634 0.5083 -0.8932 33 1 -0.3634 -1.0276 0.0064 34 1 2.6604 1.1183 -2.0564 35 1 3.2744 2.6367 -3.4965 36 1 3.3350 -0.2976 -8.4425 37 1 3.7933 0.0388 -10.8367 38 1 4.7056 4.0407 -10.2177 39 1 4.2669 3.8380 -7.8048 40 1 2.9633 -0.4985 -6.4363 41 1 4.1668 -0.8770 -0.6579 42 1 3.4812 -2.4156 -1.2790 43 1 3.6654 -2.0412 1.3932 44 1 2.1799 -2.7718 0.7115 45 1 3.4000 -2.7361 3.9648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088945101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 115.596263 kcal Electronic energy + Delta-G solvation = -28237.221891 eV Core-core repulsion = 24257.614927 eV Total energy + Delta-G solvation = -3979.606963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.20215 -40.44094 -39.36287 -37.46970 -34.90619 -34.01410 -32.10406 -32.03765 -30.88790 -30.55425 -30.26877 -28.55989 -25.54774 -24.39390 -24.25151 -23.99800 -22.47497 -21.51937 -20.44739 -20.10471 -19.73714 -18.89671 -16.97891 -16.79487 -16.60142 -16.33042 -16.05713 -15.91782 -15.38929 -14.78156 -14.70986 -14.59584 -14.31798 -14.11732 -14.00045 -13.84954 -13.36305 -13.21010 -12.78933 -12.39363 -12.14920 -12.00902 -11.58236 -11.52166 -11.41368 -11.14799 -10.88122 -10.85159 -10.53814 -10.42708 -10.18328 -10.08023 -9.83256 -9.81991 -9.78363 -9.74231 -9.57458 -8.99155 -8.69012 -8.58635 -6.89032 -5.67362 -3.10032 0.09747 0.49824 1.49316 1.63856 1.84053 3.23771 3.29677 3.38166 3.40930 3.43968 3.46116 3.81498 3.87988 4.08881 4.31971 4.35927 4.46838 4.54409 4.73008 4.84704 4.92307 5.10627 5.19191 5.22263 5.38928 5.41192 5.44839 5.53285 5.62600 5.80876 5.91726 5.95182 6.11066 6.24281 6.30358 6.33920 6.41562 6.53088 6.59759 6.71810 6.85744 6.98041 7.10017 7.37493 7.51156 7.61370 7.71318 7.83981 8.32561 8.38583 9.18888 9.79860 10.43563 11.36167 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.001889 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.441663 B =14815.611643 C =15086.717504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.137 3.863 5 H 0.092 0.908 6 N -0.708 5.708 7 C 0.592 3.408 8 O -0.547 6.547 9 C -0.266 4.266 10 C 0.098 3.902 11 N -0.288 5.288 12 N -0.322 5.322 13 C 0.205 3.795 14 C -0.196 4.196 15 C 0.129 3.871 16 N -0.493 5.493 17 C 0.124 3.876 18 C -0.172 4.172 19 C 0.126 3.874 20 C -0.152 4.152 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.220 4.220 24 H 0.078 0.922 25 C -0.011 4.011 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.397 0.603 35 H 0.201 0.799 36 H 0.146 0.854 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.151 0.849 40 H 0.194 0.806 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.015 0.985 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 9.022 -24.346 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.033 3.967 5 H 0.110 0.890 6 N -0.358 5.358 7 C 0.378 3.622 8 O -0.425 6.425 9 C -0.280 4.280 10 C -0.091 4.091 11 N -0.104 5.104 12 N -0.095 5.095 13 C 0.104 3.896 14 C -0.218 4.218 15 C -0.028 4.028 16 N -0.203 5.203 17 C -0.032 4.032 18 C -0.194 4.194 19 C -0.019 4.019 20 C -0.192 4.192 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.348 4.348 24 H 0.096 0.904 25 C -0.207 4.207 26 N -0.569 5.569 27 Si 0.744 3.256 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.231 0.769 35 H 0.218 0.782 36 H 0.164 0.836 37 H 0.185 0.815 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.211 0.789 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.033 0.967 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.292 9.274 -25.878 27.585 hybrid contribution -0.584 -0.194 2.542 2.616 sum 1.708 9.080 -23.335 25.098 Atomic orbital electron populations 1.22247 0.97858 1.01435 0.99991 1.20984 0.92572 0.94811 0.86901 0.94621 1.22160 0.97630 0.90680 0.86230 0.88962 1.45834 1.69023 1.14162 1.06755 1.17061 0.77081 0.86413 0.81684 1.90782 1.50977 1.18494 1.82254 1.20516 1.18014 0.95468 0.94013 1.24383 0.94715 0.93044 0.96994 1.77267 1.24657 1.11661 0.96816 1.45581 1.50787 1.07805 1.05300 1.17827 0.96788 0.95551 0.79401 1.21976 1.06003 0.99105 0.94758 1.22709 0.92596 0.95120 0.92374 1.67730 1.13043 0.99812 1.39683 1.22785 0.93765 0.97794 0.88884 1.21978 1.02606 0.97233 0.97594 1.23067 0.94439 0.91790 0.92627 1.23396 0.96750 0.99375 0.99696 1.21948 0.97366 0.88346 0.89577 1.44501 1.59401 1.28058 1.00053 1.19064 1.27408 1.07820 0.80484 0.90388 1.24794 1.00502 0.97307 0.98061 1.69812 1.39662 1.17327 1.30055 0.86012 0.77346 0.77522 0.84681 1.20552 1.21788 1.21783 0.92669 0.94303 0.92920 0.76913 0.78223 0.83634 0.81484 0.81619 0.83104 0.78891 0.91975 0.91915 0.87378 0.96733 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.16 3.00 3.48 -66.95 -0.23 2.77 16 3 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 4 C 0.14 2.41 2.76 -66.09 -0.18 2.22 16 5 H 0.09 1.74 7.40 -51.93 -0.38 1.36 16 6 N -0.71 -9.88 5.20 -53.10 -0.28 -10.15 16 7 C 0.59 8.51 7.81 -12.52 -0.10 8.41 16 8 O -0.55 -9.74 16.62 5.28 0.09 -9.65 16 9 C -0.27 -3.05 6.13 -105.05 -0.64 -3.69 16 10 C 0.10 0.96 11.50 -16.95 -0.19 0.76 16 11 N -0.29 -3.08 11.87 30.88 0.37 -2.71 16 12 N -0.32 -3.23 3.76 -10.03 -0.04 -3.27 16 13 C 0.21 1.77 6.73 -83.36 -0.56 1.21 16 14 C -0.20 -1.30 9.52 -39.26 -0.37 -1.67 16 15 C 0.13 0.81 11.18 -17.59 -0.20 0.62 16 16 N -0.49 -3.90 10.36 -13.32 -0.14 -4.03 16 17 C 0.12 0.84 11.17 -17.59 -0.20 0.64 16 18 C -0.17 -1.31 9.73 -39.26 -0.38 -1.70 16 19 C 0.13 1.28 10.64 -16.41 -0.17 1.10 16 20 C -0.15 -2.96 6.77 -24.59 -0.17 -3.12 16 21 C 0.15 3.65 5.88 -2.53 -0.01 3.63 16 22 N -0.60 -14.45 3.13 -162.57 -0.51 -14.96 16 23 C -0.22 -5.85 9.87 -15.06 -0.15 -6.00 16 24 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 25 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 26 N -0.92 -26.32 10.09 55.49 0.56 -25.76 16 27 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.44 7.27 -40.82 -0.30 4.14 16 35 H 0.20 1.30 7.50 -52.49 -0.39 0.90 16 36 H 0.15 0.67 6.85 -52.49 -0.36 0.31 16 37 H 0.17 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.15 1.09 7.78 -52.49 -0.41 0.68 16 40 H 0.19 1.51 7.09 -52.49 -0.37 1.14 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.11 2.91 5.89 -51.93 -0.31 2.60 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -33.79 378.16 -8.43 -42.22 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.84 Total: 3.68 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -3.32 Total: 2.32 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.03 Total: -60.89 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.79 -8.43 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088945101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.819 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds