Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.99746 * 2 1 4 4 C 1.54324 * 109.88554 * 238.90672 * 2 1 3 5 5 H 1.09003 * 110.71869 * 336.92734 * 4 2 1 6 6 N 1.46503 * 110.71977 * 100.02267 * 4 2 1 7 7 C 1.34780 * 119.99651 * 202.55711 * 6 4 2 8 8 O 1.21534 * 120.00293 * 0.02562 * 7 6 4 9 9 C 1.47979 * 119.99676 * 180.02562 * 7 6 4 10 10 C 1.39443 * 119.64789 * 180.02562 * 9 7 6 11 11 C 1.38349 * 119.13416 * 179.97438 * 10 9 7 12 12 C 1.39289 * 118.43402 * 359.74740 * 11 10 9 13 13 N 1.39884 * 120.38622 * 180.26348 * 12 11 10 14 14 C 1.37153 * 126.48004 * 179.97438 * 13 12 11 15 15 C 1.34630 * 106.82996 * 179.89890 * 14 13 12 16 16 N 1.34160 * 108.20944 * 0.36954 * 15 14 13 17 17 C 1.30488 * 109.36590 * 359.76377 * 16 15 14 18 18 C 1.39266 * 119.22421 * 0.49973 * 12 11 10 19 19 N 1.31385 * 120.79534 * 359.48705 * 18 12 11 20 20 C 1.55158 * 103.10039 * 218.47733 * 4 2 1 21 21 C 1.54910 * 101.58114 * 35.41297 * 20 4 2 22 22 N 1.47319 * 110.06402 * 121.16965 * 2 1 3 23 23 C 1.36937 * 125.61828 * 298.25234 * 22 2 1 24 24 H 1.08001 * 119.99690 * 359.83464 * 23 22 2 25 25 C 1.38813 * 119.99986 * 179.83620 * 23 22 2 26 26 N 1.31623 * 120.00124 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99892 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47560 * 59.99508 * 27 25 23 29 29 H 1.48504 * 109.47056 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46976 * 299.99178 * 27 25 23 31 31 H 1.09004 * 109.46792 * 181.09148 * 1 2 3 32 32 H 1.08996 * 109.47420 * 301.09424 * 1 2 3 33 33 H 1.09003 * 109.47274 * 61.09477 * 1 2 3 34 34 H 0.96993 * 119.99985 * 22.56340 * 6 4 2 35 35 H 1.07993 * 120.43342 * 359.95954 * 10 9 7 36 36 H 1.07997 * 120.78018 * 180.02562 * 11 10 9 37 37 H 1.07998 * 126.58665 * 0.04547 * 14 13 12 38 38 H 1.07998 * 125.89600 * 180.13730 * 15 14 13 39 39 H 1.07997 * 125.72003 * 179.97438 * 17 16 15 40 40 H 1.08002 * 119.60434 * 179.77353 * 18 12 11 41 41 H 1.09005 * 111.00118 * 153.48653 * 20 4 2 42 42 H 1.08996 * 111.00176 * 277.33258 * 20 4 2 43 43 H 1.09003 * 110.36667 * 81.82935 * 21 20 4 44 44 H 1.09007 * 110.36300 * 204.14621 * 21 20 4 45 45 H 0.96993 * 120.00239 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3040 -1.4437 -1.6201 6 7 2.4554 0.1962 -2.2875 7 6 2.5056 -0.2025 -3.5740 8 8 2.2180 -1.3463 -3.8674 9 6 2.9107 0.7526 -4.6293 10 6 2.9596 0.3325 -5.9580 11 6 3.3392 1.2343 -6.9361 12 6 3.6543 2.5356 -6.5520 13 7 4.0379 3.4822 -7.5078 14 6 4.3729 4.7909 -7.2706 15 6 4.6770 5.3376 -8.4628 16 7 4.5256 4.3962 -9.4065 17 6 4.1433 3.2807 -8.8477 18 6 3.5879 2.8818 -5.2047 19 7 3.2234 2.0006 -4.3009 20 6 3.2870 -1.5176 -0.6957 21 6 2.8161 -1.8830 0.7341 22 7 2.0354 -0.7162 1.1840 23 6 1.8140 -0.3585 2.4872 24 1 1.2259 0.5185 2.7139 25 6 2.3455 -1.1230 3.5167 26 7 3.0619 -2.1921 3.2403 27 14 2.0430 -0.6354 5.2943 28 1 0.5830 -0.6337 5.5656 29 1 2.7122 -1.6080 6.1952 30 1 2.5929 0.7228 5.5355 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3634 0.5307 0.8800 33 1 -0.3634 0.4967 -0.8996 34 1 2.6846 1.1091 -2.0534 35 1 2.7046 -0.6836 -6.2202 36 1 3.3858 0.9376 -7.9734 37 1 4.3917 5.2869 -6.3115 38 1 4.9855 6.3588 -8.6309 39 1 3.9437 2.3531 -9.3635 40 1 3.8344 3.8881 -4.8996 41 1 3.4812 -2.4144 -1.2843 42 1 4.1664 -0.8743 -0.6651 43 1 2.1880 -2.7736 0.7106 44 1 3.6743 -2.0402 1.3875 45 1 3.4329 -2.7265 3.9596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088975780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 104.613402 kcal Electronic energy + Delta-G solvation = -28355.209411 eV Core-core repulsion = 24375.126195 eV Total energy + Delta-G solvation = -3980.083216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.90408 -40.90500 -39.31907 -37.54598 -35.18412 -34.14241 -32.90947 -32.06742 -30.62293 -30.34584 -29.98639 -28.58477 -25.77645 -24.66207 -24.22482 -23.98847 -22.03210 -21.45248 -20.86563 -20.17841 -19.86766 -19.21062 -17.94654 -17.13893 -16.73103 -16.18124 -15.84580 -15.52475 -15.19814 -15.13195 -14.72017 -14.68440 -14.32395 -14.03698 -13.93538 -13.82543 -13.61665 -13.40889 -13.04097 -12.79941 -12.15547 -12.03160 -11.60766 -11.56516 -11.16804 -10.88109 -10.86090 -10.77686 -10.61820 -10.54072 -10.41448 -10.34644 -10.13981 -9.89749 -9.76374 -9.58218 -9.34597 -8.98976 -8.71176 -8.64055 -6.89714 -5.67000 -3.09906 -0.18250 0.54647 1.56713 1.99006 2.53286 2.63305 3.05176 3.38984 3.43351 3.44663 3.45835 3.68964 3.86887 3.93824 4.10216 4.24494 4.38081 4.47971 4.67960 4.85856 4.96321 5.09761 5.18125 5.21248 5.37713 5.40074 5.50946 5.59699 5.63158 5.76654 5.80618 6.09948 6.13580 6.21137 6.27683 6.30658 6.48643 6.55842 6.58056 6.67453 6.82802 7.02022 7.13763 7.42564 7.49079 7.60011 7.64978 7.83032 8.20357 8.33278 9.18810 9.79412 10.43205 11.36314 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.002011 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.373873 B =13917.976408 C =14505.418082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.038 0.962 4 C 0.132 3.868 5 H 0.095 0.905 6 N -0.690 5.690 7 C 0.567 3.433 8 O -0.533 6.533 9 C 0.080 3.920 10 C -0.082 4.082 11 C -0.097 4.097 12 C 0.100 3.900 13 N -0.410 5.410 14 C -0.052 4.052 15 C -0.019 4.019 16 N -0.482 5.482 17 C 0.191 3.809 18 C 0.096 3.904 19 N -0.428 5.428 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.220 4.220 24 H 0.077 0.923 25 C -0.011 4.011 26 N -0.921 5.921 27 Si 0.915 3.085 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.409 0.591 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.183 0.817 38 H 0.178 0.822 39 H 0.211 0.789 40 H 0.169 0.831 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.015 0.985 44 H 0.110 0.890 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 10.928 -22.462 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.056 0.944 4 C 0.028 3.972 5 H 0.113 0.887 6 N -0.340 5.340 7 C 0.351 3.649 8 O -0.410 6.410 9 C -0.059 4.059 10 C -0.103 4.103 11 C -0.124 4.124 12 C 0.003 3.997 13 N -0.090 5.090 14 C -0.181 4.181 15 C -0.164 4.164 16 N -0.199 5.199 17 C -0.090 4.090 18 C -0.067 4.067 19 N -0.139 5.139 20 C -0.192 4.192 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.348 4.348 24 H 0.095 0.905 25 C -0.206 4.206 26 N -0.570 5.570 27 Si 0.745 3.255 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.245 0.755 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.200 0.800 38 H 0.195 0.805 39 H 0.227 0.773 40 H 0.186 0.814 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.128 0.872 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.897 10.329 -22.294 24.644 hybrid contribution -0.185 0.410 0.956 1.056 sum 1.712 10.739 -21.338 23.950 Atomic orbital electron populations 1.22233 0.97770 1.01479 0.99988 1.21045 0.92615 0.94895 0.86774 0.94422 1.22276 0.97889 0.90740 0.86322 0.88701 1.45955 1.66322 1.15834 1.05856 1.17655 0.78466 0.86373 0.82440 1.90806 1.49572 1.18427 1.82148 1.21463 0.99461 0.91292 0.93695 1.22068 0.95208 1.01633 0.91417 1.21311 0.99034 0.90595 1.01447 1.19100 1.00586 0.89784 0.90203 1.43133 1.49352 1.09108 1.07423 1.22901 1.09105 0.83861 1.02226 1.22441 1.05768 1.00044 0.88149 1.70365 1.17371 0.99543 1.32591 1.25392 1.03888 1.00311 0.79383 1.22616 0.97849 0.99961 0.86229 1.67656 1.07981 1.01607 1.36640 1.23413 0.96655 0.99294 0.99874 1.21959 0.97473 0.88359 0.89403 1.44549 1.59306 1.28138 1.00033 1.18976 1.27341 1.08051 0.80479 0.90493 1.24792 1.00398 0.97375 0.98066 1.69777 1.39181 1.17654 1.30345 0.86152 0.77633 0.77412 0.84271 1.21239 1.21600 1.21181 0.92864 0.92631 0.94308 0.75523 0.82035 0.83086 0.79988 0.80528 0.77268 0.81366 0.91871 0.91891 0.96700 0.87240 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.15 37.16 0.34 -2.50 16 2 C 0.15 3.06 3.49 -66.79 -0.23 2.83 16 3 H 0.04 0.74 7.70 -51.93 -0.40 0.34 16 4 C 0.13 2.36 2.79 -66.09 -0.18 2.18 16 5 H 0.10 1.79 7.33 -51.93 -0.38 1.41 16 6 N -0.69 -10.33 5.18 -52.92 -0.27 -10.61 16 7 C 0.57 8.28 7.80 -12.27 -0.10 8.18 16 8 O -0.53 -9.17 16.00 5.34 0.09 -9.09 16 9 C 0.08 0.91 6.75 -83.01 -0.56 0.35 16 10 C -0.08 -0.72 9.62 -39.09 -0.38 -1.10 16 11 C -0.10 -0.63 9.57 -39.15 -0.37 -1.01 16 12 C 0.10 0.73 6.66 -83.41 -0.56 0.17 16 13 N -0.41 -2.92 2.98 -61.93 -0.18 -3.11 16 14 C -0.05 -0.33 10.86 -16.45 -0.18 -0.51 16 15 C -0.02 -0.14 11.85 -17.81 -0.21 -0.35 16 16 N -0.48 -4.50 11.24 -14.46 -0.16 -4.67 16 17 C 0.19 1.38 11.93 -89.59 -1.07 0.31 16 18 C 0.10 0.76 10.64 -17.36 -0.18 0.58 16 19 N -0.43 -4.47 9.52 -9.66 -0.09 -4.57 16 20 C -0.15 -2.98 6.77 -24.58 -0.17 -3.15 16 21 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 22 N -0.59 -14.61 3.14 -162.35 -0.51 -15.12 16 23 C -0.22 -5.92 9.91 -15.06 -0.15 -6.07 16 24 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 25 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 26 N -0.92 -26.38 10.09 55.49 0.56 -25.82 16 27 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.41 5.58 7.66 -40.82 -0.31 5.26 16 35 H 0.16 1.30 7.63 -52.49 -0.40 0.90 16 36 H 0.15 0.50 6.88 -52.49 -0.36 0.14 16 37 H 0.18 0.62 7.16 -52.49 -0.38 0.24 16 38 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.21 0.77 7.12 -52.49 -0.37 0.39 16 40 H 0.17 0.89 6.82 -52.49 -0.36 0.54 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 2.95 5.87 -51.92 -0.30 2.64 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -33.21 375.34 -9.82 -43.03 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.77 Total: 4.40 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -4.11 Total: 3.19 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.66 Total: -63.88 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.21 -9.82 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088975780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.642 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds