Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.99867 * 2 1 4 4 C 1.54320 * 109.88677 * 238.89362 * 2 1 3 5 5 H 1.08999 * 110.72000 * 336.93689 * 4 2 1 6 6 N 1.46506 * 110.71726 * 100.03250 * 4 2 1 7 7 C 1.34777 * 119.99873 * 205.00338 * 6 4 2 8 8 O 1.21579 * 119.99978 * 359.97438 * 7 6 4 9 9 C 1.47686 * 120.00109 * 179.97438 * 7 6 4 10 10 C 1.39693 * 120.07638 * 359.72832 * 9 7 6 11 11 C 1.37745 * 119.91699 * 179.69940 * 10 9 7 12 12 C 1.39027 * 120.07938 * 0.57049 * 11 10 9 13 13 N 1.39935 * 119.91983 * 179.70393 * 12 11 10 14 14 C 1.36310 * 126.86794 * 359.72496 * 13 12 11 15 15 C 1.34965 * 106.78013 * 179.90599 * 14 13 12 16 16 N 1.33378 * 109.01374 * 0.37502 * 15 14 13 17 17 N 1.28768 * 109.92635 * 359.76139 * 16 15 14 18 18 C 1.39027 * 120.15797 * 359.72154 * 12 11 10 19 19 C 1.37740 * 120.08020 * 359.97438 * 18 12 11 20 20 C 1.55159 * 102.94491 * 218.39387 * 4 2 1 21 21 C 1.54905 * 101.58152 * 35.49992 * 20 4 2 22 22 N 1.47025 * 109.87908 * 121.08879 * 2 1 3 23 23 C 1.36939 * 125.64866 * 298.32638 * 22 2 1 24 24 H 1.08000 * 119.99681 * 359.97438 * 23 22 2 25 25 C 1.38810 * 120.00345 * 179.97438 * 23 22 2 26 26 N 1.31624 * 120.00041 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00101 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46774 * 90.00365 * 27 25 23 29 29 H 1.48500 * 109.47135 * 209.99829 * 27 25 23 30 30 H 1.48495 * 109.47436 * 329.99950 * 27 25 23 31 31 H 1.08998 * 109.47529 * 181.09467 * 1 2 3 32 32 H 1.08994 * 109.47741 * 301.10702 * 1 2 3 33 33 H 1.09007 * 109.46917 * 61.10673 * 1 2 3 34 34 H 0.96995 * 120.00050 * 24.72452 * 6 4 2 35 35 H 1.08005 * 120.04416 * 359.96865 * 10 9 7 36 36 H 1.08002 * 119.96155 * 180.29832 * 11 10 9 37 37 H 1.07998 * 126.60917 * 0.04828 * 14 13 12 38 38 H 1.08001 * 125.49232 * 180.13601 * 15 14 13 39 39 H 1.08000 * 119.95965 * 179.97438 * 18 12 11 40 40 H 1.07998 * 120.03749 * 179.97438 * 19 18 12 41 41 H 1.08994 * 111.00677 * 153.58247 * 20 4 2 42 42 H 1.09004 * 111.00000 * 277.43101 * 20 4 2 43 43 H 1.08997 * 110.37009 * 204.15141 * 21 20 4 44 44 H 1.09003 * 110.36484 * 81.83150 * 21 20 4 45 45 H 0.96993 * 120.00234 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7497 -1.2425 5 1 1.3040 -1.4439 -1.6199 6 7 2.4557 0.1958 -2.2874 7 6 2.4584 -0.1888 -3.5791 8 8 2.1288 -1.3204 -3.8772 9 6 2.8619 0.7645 -4.6325 10 6 3.2355 2.0669 -4.2924 11 6 3.6172 2.9514 -5.2769 12 6 3.6195 2.5529 -6.6089 13 7 4.0019 3.4562 -7.6069 14 6 4.3898 4.7513 -7.4329 15 6 4.6683 5.2426 -8.6587 16 7 4.4538 4.2904 -9.5676 17 7 4.0566 3.2115 -8.9876 18 6 3.2424 1.2594 -6.9516 19 6 2.8656 0.3677 -5.9718 20 6 3.2876 -1.5144 -0.6920 21 6 2.8144 -1.8793 0.7372 22 7 2.0299 -0.7140 1.1841 23 6 1.8047 -0.3554 2.4863 24 1 1.2146 0.5208 2.7108 25 6 2.3349 -1.1180 3.5179 26 7 3.0546 -2.1856 3.2443 27 14 2.0283 -0.6284 5.2943 28 1 0.7875 -1.2832 5.7811 29 1 3.1765 -1.0592 6.1317 30 1 1.8772 0.8462 5.3824 31 1 -0.3634 -1.0274 0.0196 32 1 -0.3634 0.5309 0.8798 33 1 -0.3633 0.4966 -0.8998 34 1 2.7151 1.0997 -2.0499 35 1 3.2293 2.3786 -3.2583 36 1 3.9108 3.9570 -5.0143 37 1 4.4627 5.2812 -6.4947 38 1 5.0064 6.2464 -8.8699 39 1 3.2450 0.9534 -7.9874 40 1 2.5724 -0.6369 -6.2389 41 1 3.4853 -2.4112 -1.2791 42 1 4.1654 -0.8689 -0.6600 43 1 3.6714 -2.0337 1.3927 44 1 2.1885 -2.7714 0.7133 45 1 3.4247 -2.7187 3.9651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088976013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = 128.203395 kcal Electronic energy + Delta-G solvation = -28281.964938 eV Core-core repulsion = 24302.904661 eV Total energy + Delta-G solvation = -3979.060277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66778 -40.48466 -39.01166 -37.55428 -34.89375 -34.22234 -32.33573 -31.76217 -31.08686 -30.51561 -30.19875 -28.57613 -25.70933 -24.47645 -24.04813 -23.86321 -22.40276 -21.64088 -20.75623 -20.27466 -19.84367 -19.08753 -17.75802 -16.88665 -16.33058 -16.28113 -15.80116 -15.53920 -15.06403 -14.90086 -14.83155 -14.60028 -14.14280 -14.02304 -13.98719 -13.56362 -13.39055 -13.05698 -12.84231 -12.38452 -12.19785 -12.06151 -11.71660 -11.64632 -11.54067 -11.49630 -11.20375 -10.91686 -10.89558 -10.64936 -10.51524 -10.14754 -9.92907 -9.92354 -9.81015 -9.65341 -9.62389 -9.00539 -8.74521 -8.67586 -6.93837 -5.71058 -3.14287 -0.18186 0.74889 1.16051 1.60212 2.05970 2.63798 3.12246 3.35509 3.40562 3.42525 3.47147 3.84144 3.94003 4.23082 4.35015 4.41803 4.48450 4.55221 4.67482 4.74564 4.94999 5.05469 5.19307 5.35806 5.37820 5.47082 5.48574 5.55325 5.58449 5.73778 5.75512 5.87470 5.97820 6.04678 6.16428 6.23177 6.27067 6.35018 6.44843 6.52568 6.64252 6.79297 7.02165 7.45088 7.55974 7.56730 7.62583 7.79431 8.19996 8.29537 9.14732 9.75613 10.38978 11.32200 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.001974 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.939920 B =14183.111226 C =14743.400107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.134 3.866 5 H 0.096 0.904 6 N -0.707 5.707 7 C 0.554 3.446 8 O -0.534 6.534 9 C -0.123 4.123 10 C -0.062 4.062 11 C -0.133 4.133 12 C 0.155 3.845 13 N -0.319 5.319 14 C 0.024 3.976 15 C -0.072 4.072 16 N -0.231 5.231 17 N -0.061 5.061 18 C -0.115 4.115 19 C -0.038 4.038 20 C -0.153 4.153 21 C 0.152 3.848 22 N -0.595 5.595 23 C -0.221 4.221 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.397 0.603 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.198 0.802 38 H 0.192 0.808 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.015 0.985 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 13.925 -18.909 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.029 3.971 5 H 0.114 0.886 6 N -0.358 5.358 7 C 0.340 3.660 8 O -0.412 6.412 9 C -0.126 4.126 10 C -0.082 4.082 11 C -0.154 4.154 12 C 0.063 3.937 13 N -0.100 5.100 14 C -0.126 4.126 15 C -0.227 4.227 16 N -0.101 5.101 17 N -0.038 5.038 18 C -0.135 4.135 19 C -0.057 4.057 20 C -0.193 4.193 21 C 0.027 3.973 22 N -0.320 5.320 23 C -0.349 4.349 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.232 0.768 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.215 0.785 38 H 0.209 0.791 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.033 0.967 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.235 12.030 -20.026 23.468 hybrid contribution 0.063 1.507 1.976 2.486 sum 2.298 13.537 -18.049 22.679 Atomic orbital electron populations 1.22246 0.97816 1.01544 0.99935 1.20991 0.92655 0.94725 0.86917 0.94726 1.22240 0.97866 0.90756 0.86210 0.88557 1.46007 1.67572 1.16223 1.05959 1.18063 0.78197 0.87149 0.82541 1.90798 1.48059 1.20001 1.82312 1.20254 1.03295 0.94483 0.94616 1.21216 0.95365 0.91874 0.99708 1.20778 1.03519 1.01259 0.89813 1.17765 1.00494 0.89491 0.85986 1.48050 1.45128 1.09055 1.07801 1.23627 1.01277 0.85293 1.02392 1.23304 1.09639 1.01694 0.88069 1.74371 1.09955 0.97905 1.27866 1.82163 1.21127 1.17400 0.83153 1.20926 1.00256 0.90872 1.01425 1.21244 0.93824 1.00215 0.90451 1.23407 0.96640 0.99370 0.99839 1.21962 0.97428 0.88420 0.89469 1.44488 1.59243 1.28234 1.00042 1.19008 1.27283 1.08193 0.80465 0.90449 1.24799 1.00319 0.97378 0.98094 1.69788 1.39015 1.17803 1.30228 0.86080 0.77279 0.77711 0.84437 1.21622 1.21660 1.20722 0.92843 0.92663 0.94340 0.76776 0.83978 0.84294 0.78541 0.79137 0.83558 0.83128 0.91897 0.91929 0.87256 0.96679 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.13 37.15 0.34 -2.42 16 2 C 0.16 2.93 3.48 -66.96 -0.23 2.70 16 3 H 0.04 0.63 7.71 -51.93 -0.40 0.23 16 4 C 0.13 2.28 2.85 -66.09 -0.19 2.09 16 5 H 0.10 1.78 7.25 -51.93 -0.38 1.41 16 6 N -0.71 -9.39 5.13 -53.02 -0.27 -9.66 16 7 C 0.55 7.58 7.77 -12.40 -0.10 7.49 16 8 O -0.53 -9.28 15.98 5.30 0.08 -9.19 16 9 C -0.12 -1.26 5.87 -104.95 -0.62 -1.88 16 10 C -0.06 -0.47 9.53 -39.22 -0.37 -0.84 16 11 C -0.13 -0.86 9.46 -39.47 -0.37 -1.24 16 12 C 0.16 1.31 6.70 -83.57 -0.56 0.75 16 13 N -0.32 -2.82 3.85 -10.50 -0.04 -2.86 16 14 C 0.02 0.14 10.92 -16.72 -0.18 -0.04 16 15 C -0.07 -0.49 11.86 -18.04 -0.21 -0.70 16 16 N -0.23 -2.45 12.33 30.09 0.37 -2.08 16 17 N -0.06 -0.68 13.15 60.35 0.79 0.11 16 18 C -0.11 -1.02 9.66 -39.47 -0.38 -1.40 16 19 C -0.04 -0.37 9.58 -39.22 -0.38 -0.74 16 20 C -0.15 -2.88 6.77 -24.58 -0.17 -3.04 16 21 C 0.15 3.57 5.89 -2.53 -0.01 3.56 16 22 N -0.59 -14.20 3.13 -162.58 -0.51 -14.71 16 23 C -0.22 -5.81 9.89 -15.06 -0.15 -5.96 16 24 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 25 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 26 N -0.92 -25.98 10.09 55.49 0.56 -25.42 16 27 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.40 4.15 6.39 -40.82 -0.26 3.88 16 35 H 0.14 0.77 6.40 -52.48 -0.34 0.43 16 36 H 0.14 0.47 6.82 -52.49 -0.36 0.11 16 37 H 0.20 0.29 7.16 -52.49 -0.38 -0.09 16 38 H 0.19 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.15 1.23 7.72 -52.49 -0.41 0.83 16 40 H 0.15 1.46 7.64 -52.49 -0.40 1.06 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.11 2.89 5.87 -51.93 -0.31 2.58 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -33.44 375.30 -7.78 -41.22 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.72 Total: 2.67 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.68 Total: -2.06 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.90 Total: -54.62 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.44 -7.78 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088976013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.426 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds