Wall clock time and date at job start Sat Apr 11 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.99903 * 2 1 4 4 C 1.54323 * 109.88374 * 238.90667 * 2 1 3 5 5 H 1.09000 * 110.72234 * 336.92910 * 4 2 1 6 6 N 1.46502 * 110.72261 * 100.02353 * 4 2 1 7 7 C 1.34777 * 120.00055 * 202.55921 * 6 4 2 8 8 O 1.21509 * 120.00007 * 0.02562 * 7 6 4 9 9 C 1.48162 * 119.99513 * 179.97438 * 7 6 4 10 10 C 1.39941 * 120.89451 * 359.97438 * 9 7 6 11 11 C 1.38042 * 119.13508 * 180.02562 * 10 9 7 12 12 N 1.31859 * 120.98226 * 0.02562 * 11 10 9 13 13 C 1.32219 * 121.97165 * 359.97438 * 12 11 10 14 14 N 1.39851 * 119.62852 * 180.02562 * 13 12 11 15 15 C 1.37173 * 126.47852 * 359.97438 * 14 13 12 16 16 C 1.34628 * 106.82727 * 180.02562 * 15 14 13 17 17 N 1.34149 * 108.21277 * 0.02562 * 16 15 14 18 18 C 1.30491 * 109.37430 * 359.71951 * 17 16 15 19 19 C 1.38915 * 120.75330 * 0.02562 * 13 12 11 20 20 C 1.55159 * 103.10288 * 218.47595 * 4 2 1 21 21 C 1.54909 * 101.57872 * 35.41479 * 20 4 2 22 22 N 1.47317 * 110.06816 * 121.17084 * 2 1 3 23 23 C 1.36933 * 125.61668 * 298.32911 * 22 2 1 24 24 H 1.08003 * 119.99744 * 359.79192 * 23 22 2 25 25 C 1.38807 * 120.00262 * 179.79539 * 23 22 2 26 26 N 1.31627 * 119.99885 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00400 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47121 * 59.99735 * 27 25 23 29 29 H 1.48494 * 109.47455 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47115 * 300.00221 * 27 25 23 31 31 H 1.09005 * 109.47196 * 181.09408 * 1 2 3 32 32 H 1.09002 * 109.47407 * 301.09725 * 1 2 3 33 33 H 1.09003 * 109.47415 * 61.09455 * 1 2 3 34 34 H 0.96997 * 119.99720 * 22.56019 * 6 4 2 35 35 H 1.08001 * 120.43352 * 359.97438 * 10 9 7 36 36 H 1.08007 * 119.51152 * 180.02562 * 11 10 9 37 37 H 1.08000 * 126.59333 * 0.02562 * 15 14 13 38 38 H 1.07995 * 125.89409 * 180.02562 * 16 15 14 39 39 H 1.07992 * 125.72405 * 180.27186 * 18 17 16 40 40 H 1.07997 * 120.53158 * 179.72012 * 19 13 12 41 41 H 1.09006 * 111.00430 * 153.48631 * 20 4 2 42 42 H 1.08995 * 111.00418 * 277.33535 * 20 4 2 43 43 H 1.08994 * 110.37123 * 81.83175 * 21 20 4 44 44 H 1.09000 * 110.36373 * 204.04097 * 21 20 4 45 45 H 0.97002 * 119.99825 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3040 -1.4436 -1.6202 6 7 2.4554 0.1961 -2.2876 7 6 2.5055 -0.2025 -3.5741 8 8 2.2179 -1.3460 -3.8674 9 6 2.9101 0.7541 -4.6307 10 6 3.2435 2.0758 -4.3140 11 6 3.6150 2.9364 -5.3273 12 7 3.6582 2.5303 -6.5811 13 6 3.3518 1.2915 -6.9267 14 7 3.4150 0.9131 -8.2715 15 6 3.7738 1.7118 -9.3274 16 6 3.6983 0.9506 -10.4352 17 7 3.3045 -0.2795 -10.0727 18 6 3.1368 -0.3166 -8.7791 19 6 2.9677 0.3612 -5.9691 20 6 3.2870 -1.5176 -0.6958 21 6 2.8161 -1.8831 0.7340 22 7 2.0354 -0.7162 1.1840 23 6 1.8129 -0.3593 2.4871 24 1 1.2243 0.5173 2.7139 25 6 2.3439 -1.1242 3.5166 26 7 3.0609 -2.1928 3.2402 27 14 2.0409 -0.6369 5.2943 28 1 0.5808 -0.6351 5.5651 29 1 2.7097 -1.6098 6.1951 30 1 2.5909 0.7211 5.5359 31 1 -0.3634 -1.0275 0.0196 32 1 -0.3634 0.5308 0.8800 33 1 -0.3634 0.4967 -0.8996 34 1 2.6846 1.1091 -2.0534 35 1 3.2100 2.4182 -3.2903 36 1 3.8740 3.9577 -5.0897 37 1 4.0615 2.7517 -9.2795 38 1 3.9171 1.2743 -11.4420 39 1 2.8265 -1.1791 -8.2080 40 1 2.7139 -0.6485 -6.2559 41 1 3.4811 -2.4144 -1.2844 42 1 4.1664 -0.8744 -0.6652 43 1 2.1881 -2.7736 0.7106 44 1 3.6743 -2.0421 1.3869 45 1 3.4317 -2.7275 3.9596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089046519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:00 Heat of formation + Delta-G solvation = 108.682454 kcal Electronic energy + Delta-G solvation = -28504.560983 eV Core-core repulsion = 24524.654215 eV Total energy + Delta-G solvation = -3979.906768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73145 -40.91071 -39.51327 -37.67339 -34.84596 -34.20509 -33.26088 -32.06589 -30.62697 -30.45554 -29.66426 -28.75764 -25.90373 -24.70091 -24.19505 -24.04116 -22.19551 -21.31286 -20.77658 -20.35539 -20.02269 -18.95290 -17.52541 -17.02726 -16.65573 -16.29478 -16.18222 -15.87184 -15.16249 -15.04026 -14.79440 -14.34256 -14.25692 -14.23730 -14.04738 -13.96015 -13.76686 -13.46772 -12.92645 -12.56629 -12.23453 -12.12838 -11.68948 -11.25428 -11.22059 -10.95467 -10.92743 -10.73920 -10.65998 -10.53126 -10.45814 -10.43216 -10.19646 -10.01302 -9.86600 -9.66091 -9.27486 -8.89445 -8.87699 -8.72876 -6.97386 -5.73585 -3.17044 0.04219 0.27985 1.72232 1.96121 2.64227 2.76378 2.87874 3.34298 3.35643 3.39054 3.40492 3.73696 4.07317 4.13362 4.26165 4.34436 4.40782 4.43471 4.76812 4.95165 5.02543 5.11481 5.15810 5.28118 5.31794 5.40218 5.44150 5.50155 5.66615 5.69967 5.81883 5.98678 6.07533 6.16313 6.20827 6.28959 6.38085 6.45516 6.58310 6.67668 6.73227 6.94764 7.17987 7.36280 7.44534 7.52852 7.59300 7.76203 8.01084 8.25970 9.11840 9.72459 10.35476 11.29661 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.002028 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.171329 B =13802.515159 C =14182.458683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.133 3.867 5 H 0.096 0.904 6 N -0.701 5.701 7 C 0.554 3.446 8 O -0.525 6.525 9 C -0.050 4.050 10 C -0.152 4.152 11 C 0.134 3.866 12 N -0.486 5.486 13 C 0.342 3.658 14 N -0.411 5.411 15 C -0.027 4.027 16 C -0.030 4.030 17 N -0.478 5.478 18 C 0.197 3.803 19 C -0.125 4.125 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.223 4.223 24 H 0.077 0.923 25 C -0.009 4.009 26 N -0.920 5.920 27 Si 0.915 3.085 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.399 0.601 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.183 0.817 38 H 0.177 0.823 39 H 0.214 0.786 40 H 0.157 0.843 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.110 0.890 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 10.566 -19.708 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.029 3.971 5 H 0.114 0.886 6 N -0.352 5.352 7 C 0.339 3.661 8 O -0.401 6.401 9 C -0.062 4.062 10 C -0.173 4.173 11 C -0.023 4.023 12 N -0.199 5.199 13 C 0.114 3.886 14 N -0.093 5.093 15 C -0.156 4.156 16 C -0.175 4.175 17 N -0.194 5.194 18 C -0.085 4.085 19 C -0.148 4.148 20 C -0.193 4.193 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.351 4.351 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.568 5.568 27 Si 0.746 3.254 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.234 0.766 35 H 0.169 0.831 36 H 0.193 0.807 37 H 0.200 0.800 38 H 0.194 0.806 39 H 0.231 0.769 40 H 0.174 0.826 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.128 0.872 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.551 9.593 -20.799 22.957 hybrid contribution -0.224 0.866 2.230 2.403 sum 1.327 10.459 -18.569 21.353 Atomic orbital electron populations 1.22246 0.97712 1.01603 1.00019 1.21036 0.92667 0.94756 0.86811 0.94583 1.22293 0.97992 0.90655 0.86136 0.88559 1.45994 1.67611 1.15433 1.06131 1.17951 0.78564 0.87075 0.82508 1.90805 1.48360 1.18855 1.82116 1.20351 0.97771 0.94347 0.93724 1.22463 0.99579 0.93102 1.02152 1.22595 0.93915 1.00312 0.85513 1.66861 1.15718 1.15066 1.22246 1.18021 0.97044 0.90278 0.83221 1.43139 1.50278 1.11703 1.04224 1.22937 1.07512 0.99103 0.86074 1.22432 1.06158 0.89860 0.99042 1.70364 1.17332 1.21819 1.09916 1.25479 1.04165 0.88142 0.90711 1.21644 1.00553 1.01214 0.91367 1.23417 0.96542 0.99359 0.99937 1.21961 0.97538 0.88388 0.89354 1.44547 1.59261 1.28160 1.00015 1.18961 1.27558 1.08179 0.80424 0.90474 1.24800 1.00282 0.97308 0.98129 1.69776 1.39001 1.17611 1.30450 0.86150 0.77678 0.77437 0.84181 1.21198 1.21552 1.21152 0.92802 0.92564 0.94307 0.76554 0.83129 0.80719 0.80029 0.80606 0.76945 0.82562 0.91809 0.91877 0.96655 0.87190 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.15 37.15 0.34 -2.34 16 2 C 0.16 2.85 3.49 -66.79 -0.23 2.62 16 3 H 0.04 0.63 7.70 -51.93 -0.40 0.23 16 4 C 0.13 2.19 2.79 -66.09 -0.18 2.00 16 5 H 0.10 1.71 7.33 -51.93 -0.38 1.33 16 6 N -0.70 -8.83 5.15 -52.87 -0.27 -9.10 16 7 C 0.55 7.19 7.80 -12.18 -0.10 7.10 16 8 O -0.52 -8.64 16.13 5.36 0.09 -8.55 16 9 C -0.05 -0.50 5.91 -104.67 -0.62 -1.12 16 10 C -0.15 -1.09 9.61 -39.02 -0.37 -1.46 16 11 C 0.13 0.92 11.17 -17.61 -0.20 0.72 16 12 N -0.49 -4.50 9.86 -12.33 -0.12 -4.62 16 13 C 0.34 3.40 7.50 -154.42 -1.16 2.24 16 14 N -0.41 -4.12 2.98 -63.84 -0.19 -4.31 16 15 C -0.03 -0.25 11.17 -16.44 -0.18 -0.43 16 16 C -0.03 -0.29 11.85 -17.82 -0.21 -0.50 16 17 N -0.48 -5.45 11.24 -14.47 -0.16 -5.61 16 18 C 0.20 1.95 11.90 -89.58 -1.07 0.88 16 19 C -0.12 -1.23 9.07 -38.82 -0.35 -1.59 16 20 C -0.15 -2.80 6.77 -24.58 -0.17 -2.97 16 21 C 0.15 3.52 5.89 -2.53 -0.01 3.51 16 22 N -0.59 -13.97 3.14 -162.36 -0.51 -14.48 16 23 C -0.22 -5.79 9.91 -15.06 -0.15 -5.94 16 24 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 25 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 26 N -0.92 -25.75 10.09 55.49 0.56 -25.19 16 27 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.40 3.89 6.48 -40.82 -0.26 3.62 16 35 H 0.15 0.70 6.53 -52.49 -0.34 0.36 16 36 H 0.18 0.60 8.06 -52.48 -0.42 0.17 16 37 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.18 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.21 1.49 7.04 -52.49 -0.37 1.12 16 40 H 0.16 1.44 6.43 -52.49 -0.34 1.11 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 2.87 5.88 -51.93 -0.31 2.56 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -32.93 375.39 -10.48 -43.41 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.75 Total: 4.26 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -4.76 Total: 2.37 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.70 Total: -63.31 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.93 -10.48 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089046519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.094 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds