Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.00066 * 2 1 4 4 C 1.54325 * 109.88275 * 238.89240 * 2 1 3 5 5 H 1.08999 * 110.87223 * 336.82927 * 4 2 1 6 6 N 1.46498 * 110.71369 * 100.03126 * 4 2 1 7 7 C 1.34779 * 119.99689 * 199.97723 * 6 4 2 8 8 O 1.21661 * 120.00053 * 0.02562 * 7 6 4 9 9 C 1.46933 * 120.00075 * 180.02562 * 7 6 4 10 10 N 1.37121 * 127.34489 * 5.82528 * 9 7 6 11 11 H 0.96995 * 125.90381 * 359.97438 * 10 9 7 12 12 N 1.28616 * 108.18871 * 180.27246 * 10 9 7 13 13 N 1.28444 * 111.22652 * 359.73369 * 12 10 9 14 14 C 1.34178 * 109.40297 * 0.02562 * 13 12 10 15 15 C 1.48187 * 127.06416 * 179.97438 * 14 13 12 16 16 C 1.39438 * 120.12912 * 44.13311 * 15 14 13 17 17 C 1.37994 * 119.86687 * 180.32064 * 16 15 14 18 18 C 1.38345 * 120.13135 * 359.92770 * 17 16 15 19 19 C 1.38346 * 120.26210 * 0.04909 * 18 17 16 20 20 C 1.37984 * 120.13229 * 359.97438 * 19 18 17 21 21 C 1.55156 * 102.94456 * 218.39435 * 4 2 1 22 22 C 1.54916 * 101.58059 * 35.50327 * 21 4 2 23 23 N 1.47029 * 109.87625 * 121.08993 * 2 1 3 24 24 C 1.36933 * 125.64943 * 298.31690 * 23 2 1 25 25 H 1.08003 * 120.00036 * 0.02562 * 24 23 2 26 26 C 1.38814 * 120.00170 * 180.02562 * 24 23 2 27 27 N 1.31619 * 119.99631 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 120.00204 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.47017 * 60.00253 * 28 26 24 30 30 H 1.48497 * 109.47171 * 180.02562 * 28 26 24 31 31 H 1.48501 * 109.47344 * 300.00185 * 28 26 24 32 32 H 1.09000 * 109.47220 * 181.10552 * 1 2 3 33 33 H 1.09001 * 109.47197 * 301.10455 * 1 2 3 34 34 H 1.08998 * 109.46768 * 61.10113 * 1 2 3 35 35 H 0.96996 * 120.00421 * 19.98040 * 6 4 2 36 36 H 1.07996 * 120.06928 * 0.24819 * 16 15 14 37 37 H 1.07999 * 119.93664 * 179.97438 * 17 16 15 38 38 H 1.07997 * 119.87195 * 180.02562 * 18 17 16 39 39 H 1.08002 * 119.93351 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.07044 * 179.97438 * 20 19 18 41 41 H 1.08995 * 111.00421 * 153.57969 * 21 4 2 42 42 H 1.09000 * 111.00394 * 277.39656 * 21 4 2 43 43 H 1.08994 * 110.36281 * 81.82842 * 22 21 4 44 44 H 1.08998 * 110.36498 * 204.15070 * 22 21 4 45 45 H 0.97005 * 119.99828 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7498 -1.2426 5 1 1.3065 -1.4461 -1.6209 6 7 2.4556 0.1957 -2.2874 7 6 2.5560 -0.2165 -3.5667 8 8 2.3135 -1.3736 -3.8538 9 6 2.9584 0.7316 -4.6146 10 7 3.3705 2.0289 -4.4489 11 1 3.4506 2.4966 -3.6030 12 7 3.6264 2.5202 -5.6097 13 7 3.4237 1.6540 -6.5362 14 6 3.0052 0.5035 -5.9871 15 6 2.6581 -0.7504 -6.6965 16 6 3.4759 -1.2238 -7.7219 17 6 3.1441 -2.3886 -8.3832 18 6 2.0034 -3.0871 -8.0297 19 6 1.1885 -2.6226 -7.0129 20 6 1.5097 -1.4589 -6.3446 21 6 3.2876 -1.5145 -0.6921 22 6 2.8144 -1.8794 0.7371 23 7 2.0299 -0.7140 1.1841 24 6 1.8049 -0.3554 2.4863 25 1 1.2142 0.5205 2.7109 26 6 2.3360 -1.1175 3.5179 27 7 3.0562 -2.1846 3.2441 28 14 2.0296 -0.6279 5.2943 29 1 0.5691 -0.6285 5.5630 30 1 2.7000 -1.5973 6.1976 31 1 2.5766 0.7316 5.5345 32 1 -0.3633 -1.0275 0.0198 33 1 -0.3634 0.5309 0.8799 34 1 -0.3633 0.4966 -0.8997 35 1 2.6486 1.1183 -2.0586 36 1 4.3665 -0.6794 -7.9987 37 1 3.7764 -2.7560 -9.1779 38 1 1.7479 -3.9984 -8.5499 39 1 0.2991 -3.1719 -6.7415 40 1 0.8726 -1.0969 -5.5512 41 1 3.4852 -2.4113 -1.2792 42 1 4.1656 -0.8693 -0.6607 43 1 2.1885 -2.7714 0.7132 44 1 3.6715 -2.0338 1.3926 45 1 3.4276 -2.7170 3.9650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089064061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = 114.511876 kcal Electronic energy + Delta-G solvation = -29236.648618 eV Core-core repulsion = 25256.994632 eV Total energy + Delta-G solvation = -3979.653986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.52694 -39.84432 -39.03325 -37.68928 -34.64723 -33.83324 -32.72147 -32.03370 -30.97590 -30.53008 -29.83975 -28.67975 -25.60681 -24.21970 -24.07150 -23.76828 -22.44838 -21.92278 -20.78264 -20.37268 -20.07789 -18.95081 -17.25064 -16.92954 -16.68013 -16.55608 -16.12168 -15.47411 -14.94277 -14.77583 -14.68014 -14.40107 -14.05705 -13.76972 -13.59285 -13.41915 -12.98441 -12.96129 -12.47458 -12.25993 -12.17303 -11.71890 -11.64703 -11.40441 -11.27332 -11.25061 -10.97573 -10.94910 -10.92806 -10.71943 -10.60434 -10.22044 -10.18286 -9.90438 -9.89608 -9.68525 -8.99949 -8.90221 -8.74848 -8.59508 -6.99473 -5.75380 -3.19083 0.43086 1.16506 1.39037 2.08883 2.09665 2.86231 2.91206 3.33187 3.38024 3.39435 3.69538 3.90757 4.25525 4.39141 4.58240 4.73488 4.89720 4.96347 5.03692 5.09879 5.27349 5.29267 5.37288 5.45965 5.47725 5.54362 5.63954 5.84903 5.94920 5.97199 6.01804 6.12812 6.18091 6.24539 6.35455 6.36999 6.42714 6.43742 6.46316 6.57115 6.70336 6.87437 6.91522 7.27272 7.41729 7.51327 7.74508 7.91303 7.97340 8.24363 9.09992 9.70778 10.33381 11.27808 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.002584 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.991695 B =10833.432827 C =11626.127167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.034 0.966 4 C 0.136 3.864 5 H 0.098 0.902 6 N -0.708 5.708 7 C 0.589 3.411 8 O -0.501 6.501 9 C -0.054 4.054 10 N -0.370 5.370 11 H 0.454 0.546 12 N -0.047 5.047 13 N -0.256 5.256 14 C 0.097 3.903 15 C -0.022 4.022 16 C -0.085 4.085 17 C -0.130 4.130 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.054 4.054 21 C -0.153 4.153 22 C 0.153 3.847 23 N -0.594 5.594 24 C -0.225 4.225 25 H 0.077 0.923 26 C -0.008 4.008 27 N -0.920 5.920 28 Si 0.915 3.085 29 H -0.285 1.285 30 H -0.289 1.289 31 H -0.285 1.285 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.392 0.608 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.110 0.890 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 3.872 -19.164 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.052 0.948 4 C 0.033 3.967 5 H 0.116 0.884 6 N -0.359 5.359 7 C 0.372 3.628 8 O -0.374 6.374 9 C -0.189 4.189 10 N -0.097 5.097 11 H 0.301 0.699 12 N -0.029 5.029 13 N -0.122 5.122 14 C -0.043 4.043 15 C -0.024 4.024 16 C -0.104 4.104 17 C -0.148 4.148 18 C -0.125 4.125 19 C -0.142 4.142 20 C -0.073 4.073 21 C -0.193 4.193 22 C 0.028 3.972 23 N -0.319 5.319 24 C -0.353 4.353 25 H 0.095 0.905 26 C -0.204 4.204 27 N -0.568 5.568 28 Si 0.745 3.255 29 H -0.212 1.212 30 H -0.215 1.215 31 H -0.212 1.212 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.226 0.774 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.128 0.872 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.436 4.125 -19.973 20.399 hybrid contribution -0.325 0.256 2.328 2.364 sum -0.761 4.381 -17.645 18.197 Atomic orbital electron populations 1.22257 0.97690 1.01646 0.99999 1.20972 0.92734 0.94652 0.86842 0.94800 1.22290 0.98022 0.90503 0.85929 0.88398 1.46023 1.69001 1.14023 1.06814 1.16609 0.78595 0.86480 0.81159 1.90913 1.48897 1.16462 1.81089 1.22700 1.12098 0.86993 0.97082 1.45410 1.43929 1.09582 1.10749 0.69923 1.78076 1.16813 1.21425 0.86580 1.75231 1.15624 0.98615 1.22761 1.20789 1.00752 0.94347 0.88364 1.17500 0.96607 0.91340 0.96970 1.21121 0.98870 0.96013 0.94350 1.21008 0.97700 0.95552 1.00566 1.21257 0.94698 0.99442 0.97102 1.21041 1.00325 0.96365 0.96495 1.21121 0.95079 0.94139 0.96987 1.23423 0.96446 0.99467 0.99936 1.21971 0.97476 0.88421 0.89373 1.44473 1.59261 1.28215 0.99993 1.18955 1.27574 1.08339 0.80417 0.90489 1.24794 1.00171 0.97282 0.98124 1.69772 1.38787 1.17768 1.30450 0.86156 0.77706 0.77462 0.84160 1.21155 1.21521 1.21159 0.92727 0.92566 0.94366 0.77431 0.85761 0.85804 0.86017 0.85694 0.85712 0.91637 0.92002 0.96566 0.87209 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.14 37.16 0.34 -2.30 16 2 C 0.16 2.82 3.48 -66.95 -0.23 2.59 16 3 H 0.03 0.59 7.69 -51.93 -0.40 0.19 16 4 C 0.14 2.18 2.76 -66.10 -0.18 2.00 16 5 H 0.10 1.67 7.41 -51.93 -0.38 1.28 16 6 N -0.71 -8.74 5.20 -53.26 -0.28 -9.01 16 7 C 0.59 7.78 7.60 -12.74 -0.10 7.69 16 8 O -0.50 -8.00 13.15 5.22 0.07 -7.93 16 9 C -0.05 -0.64 7.20 -81.62 -0.59 -1.22 16 10 N -0.37 -3.45 6.96 33.67 0.23 -3.22 16 11 H 0.45 2.45 8.35 -190.36 -1.59 0.86 16 12 N -0.05 -0.56 13.31 60.35 0.80 0.25 16 13 N -0.26 -3.42 12.38 33.46 0.41 -3.01 16 14 C 0.10 1.27 6.77 -82.39 -0.56 0.71 16 15 C -0.02 -0.28 5.49 -104.91 -0.58 -0.86 16 16 C -0.08 -0.96 9.78 -39.22 -0.38 -1.35 16 17 C -0.13 -1.27 10.03 -39.63 -0.40 -1.67 16 18 C -0.11 -1.02 10.04 -39.50 -0.40 -1.42 16 19 C -0.12 -1.34 10.03 -39.63 -0.40 -1.74 16 20 C -0.05 -0.68 7.70 -39.22 -0.30 -0.98 16 21 C -0.15 -2.78 6.77 -24.58 -0.17 -2.95 16 22 C 0.15 3.49 5.89 -2.53 -0.01 3.48 16 23 N -0.59 -13.84 3.13 -162.57 -0.51 -14.35 16 24 C -0.22 -5.81 9.89 -15.06 -0.15 -5.96 16 25 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 26 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 27 N -0.92 -25.66 10.09 55.49 0.56 -25.10 16 28 Si 0.91 21.14 29.55 -169.99 -5.02 16.11 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.39 3.69 7.61 -40.82 -0.31 3.38 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.12 1.60 6.89 -52.49 -0.36 1.23 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -31.39 374.08 -9.41 -40.80 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.12 Total: 4.11 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -4.20 Total: -4.27 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 1.23 Total: -54.45 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.39 -9.41 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089064061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.310 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds