Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87255 * 2 1 4 4 C 1.54321 * 109.88524 * 238.82374 * 2 1 3 5 5 H 1.08998 * 110.71538 * 336.75291 * 4 2 1 6 6 N 1.46497 * 110.72147 * 100.02876 * 4 2 1 7 7 C 1.34766 * 119.99919 * 204.99869 * 6 4 2 8 8 O 1.21545 * 120.00492 * 0.02562 * 7 6 4 9 9 C 1.47863 * 119.99850 * 180.02562 * 7 6 4 10 10 C 1.39613 * 120.11507 * 359.97438 * 9 7 6 11 11 C 1.37970 * 119.98708 * 179.97438 * 10 9 7 12 12 C 1.38268 * 120.21914 * 359.97438 * 11 10 9 13 13 C 1.38905 * 120.22556 * 0.02562 * 12 11 10 14 14 N 1.40268 * 119.99821 * 179.97438 * 13 12 11 15 15 C 1.36119 * 125.93872 * 4.72061 * 14 13 12 16 16 C 1.35363 * 106.04962 * 179.84475 * 15 14 13 17 17 N 1.33772 * 106.54018 * 0.40452 * 16 15 14 18 18 N 1.28610 * 109.05763 * 359.73525 * 17 16 15 19 19 C 1.38589 * 120.01003 * 359.74250 * 13 12 11 20 20 C 1.55164 * 102.94092 * 218.39365 * 4 2 1 21 21 C 1.54911 * 101.58090 * 35.49953 * 20 4 2 22 22 N 1.47024 * 109.87877 * 121.01471 * 2 1 3 23 23 C 1.36941 * 125.64764 * 298.32451 * 22 2 1 24 24 H 1.07993 * 120.00060 * 341.49272 * 23 22 2 25 25 C 1.38815 * 119.99825 * 161.49630 * 23 22 2 26 26 N 1.31621 * 119.99948 * 157.62075 * 25 23 22 27 27 Si 1.86801 * 120.00057 * 337.61975 * 25 23 22 28 28 H 1.48503 * 109.46997 * 84.54288 * 27 25 23 29 29 H 1.48501 * 109.47235 * 204.54168 * 27 25 23 30 30 H 1.48497 * 109.47098 * 324.54133 * 27 25 23 31 31 H 1.08997 * 109.47561 * 300.44368 * 1 2 3 32 32 H 1.09001 * 109.46759 * 60.43652 * 1 2 3 33 33 H 1.08995 * 109.47333 * 180.43627 * 1 2 3 34 34 H 0.97008 * 119.99887 * 24.99928 * 6 4 2 35 35 H 1.07997 * 120.00754 * 359.95368 * 10 9 7 36 36 H 1.07999 * 119.89390 * 179.97438 * 11 10 9 37 37 H 1.07997 * 119.89192 * 179.97438 * 12 11 10 38 38 H 1.07998 * 126.97392 * 359.97438 * 15 14 13 39 39 H 1.08002 * 126.73117 * 180.14230 * 16 15 14 40 40 H 1.08002 * 120.10501 * 180.27566 * 19 13 12 41 41 H 1.08999 * 111.00202 * 277.42824 * 20 4 2 42 42 H 1.08998 * 110.99980 * 153.57448 * 20 4 2 43 43 H 1.09005 * 110.36235 * 204.15226 * 21 20 4 44 44 H 1.09006 * 110.36416 * 81.83311 * 21 20 4 45 45 H 0.97001 * 120.00065 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 -1.2416 5 1 1.3051 -1.4482 -1.6161 6 7 2.4556 0.1928 -2.2877 7 6 2.4584 -0.1934 -3.5788 8 8 2.1280 -1.3248 -3.8755 9 6 2.8634 0.7593 -4.6346 10 6 3.2428 2.0597 -4.2966 11 6 3.6207 2.9464 -5.2839 12 6 3.6258 2.5517 -6.6090 13 6 3.2500 1.2601 -6.9553 14 7 3.2564 0.8649 -8.3012 15 6 3.6921 1.6131 -9.3515 16 6 3.5206 0.8465 -10.4538 17 7 2.9902 -0.3083 -10.0358 18 7 2.8463 -0.2663 -8.7585 19 6 2.8733 0.3602 -5.9709 20 6 3.2876 -1.5153 -0.6901 21 6 2.8144 -1.8784 0.7396 22 7 2.0299 -0.7124 1.1850 23 6 1.8048 -0.3521 2.4868 24 1 1.4861 0.6527 2.7216 25 6 1.9863 -1.2784 3.5046 26 7 2.2072 -0.8686 4.7357 27 14 1.9169 -3.1066 3.1271 28 1 3.2475 -3.5649 2.6529 29 1 1.5457 -3.8522 4.3565 30 1 0.9025 -3.3559 2.0717 31 1 -0.3634 0.5207 0.8859 32 1 -0.3633 0.5071 -0.8939 33 1 -0.3634 -1.0276 0.0078 34 1 2.7189 1.0960 -2.0510 35 1 3.2401 2.3717 -3.2627 36 1 3.9135 3.9521 -5.0208 37 1 3.9221 3.2502 -7.3775 38 1 4.0950 2.6144 -9.3128 39 1 3.7607 1.1160 -11.4717 40 1 2.5851 -0.6457 -6.2380 41 1 4.1654 -0.8698 -0.6589 42 1 3.4852 -2.4129 -1.2760 43 1 3.6715 -2.0319 1.3953 44 1 2.1885 -2.7705 0.7168 45 1 2.3337 -1.5158 5.4470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089077662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = 135.142146 kcal Electronic energy + Delta-G solvation = -28580.066760 eV Core-core repulsion = 24601.307370 eV Total energy + Delta-G solvation = -3978.759390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.85514 -40.64105 -39.19555 -37.82877 -35.17613 -34.28541 -32.40280 -32.06018 -31.24401 -30.76818 -30.52549 -29.23773 -25.64151 -24.85885 -24.25346 -23.91209 -22.77108 -21.82464 -21.23852 -20.55972 -19.99658 -18.94115 -17.19105 -16.98942 -16.91477 -16.83270 -16.29809 -15.66527 -15.35593 -15.06552 -15.03019 -14.70741 -14.52612 -14.32031 -13.88611 -13.55158 -13.36132 -13.04441 -12.86165 -12.61107 -12.41269 -12.18195 -11.94317 -11.86364 -11.62720 -11.48686 -11.41537 -11.25629 -10.96367 -10.82990 -10.54727 -10.24255 -10.05353 -9.99953 -9.92897 -9.69466 -9.47809 -9.22078 -8.95404 -8.71201 -7.13506 -5.98984 -3.30381 -0.04096 0.39529 1.41710 1.73433 2.11952 2.52555 2.95074 3.33470 3.34345 3.47954 3.49806 3.82200 3.98917 4.14538 4.40945 4.42544 4.43583 4.51750 4.61643 4.72698 4.75545 4.90235 5.03865 5.08041 5.16265 5.24771 5.28324 5.52157 5.54422 5.59890 5.64964 5.71760 5.78627 5.86346 5.92456 5.97799 6.12034 6.20886 6.30885 6.34045 6.37470 6.57592 6.68087 6.72543 6.90959 7.40570 7.64518 8.00718 8.07044 8.26374 8.77400 9.63875 10.10657 11.16687 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027668 B = 0.002152 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.763435 B =13005.078097 C =13534.513155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.046 0.954 4 C 0.133 3.867 5 H 0.101 0.899 6 N -0.706 5.706 7 C 0.556 3.444 8 O -0.528 6.528 9 C -0.106 4.106 10 C -0.076 4.076 11 C -0.102 4.102 12 C -0.096 4.096 13 C 0.111 3.889 14 N -0.242 5.242 15 C -0.051 4.051 16 C -0.044 4.044 17 N -0.262 5.262 18 N -0.073 5.073 19 C -0.043 4.043 20 C -0.141 4.141 21 C 0.111 3.889 22 N -0.601 5.601 23 C -0.239 4.239 24 H 0.093 0.907 25 C 0.023 3.977 26 N -0.907 5.907 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.302 1.302 30 H -0.276 1.276 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.400 0.600 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.195 0.805 39 H 0.196 0.804 40 H 0.157 0.843 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.028 0.972 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 12.062 -26.009 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.064 0.936 4 C 0.028 3.972 5 H 0.119 0.881 6 N -0.357 5.357 7 C 0.342 3.658 8 O -0.405 6.405 9 C -0.110 4.110 10 C -0.095 4.095 11 C -0.121 4.121 12 C -0.117 4.117 13 C 0.020 3.980 14 N -0.029 5.029 15 C -0.199 4.199 16 C -0.199 4.199 17 N -0.129 5.129 18 N -0.051 5.051 19 C -0.064 4.064 20 C -0.180 4.180 21 C -0.014 4.014 22 N -0.327 5.327 23 C -0.366 4.366 24 H 0.110 0.890 25 C -0.175 4.175 26 N -0.550 5.550 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.230 1.230 30 H -0.201 1.201 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.236 0.764 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.212 0.788 39 H 0.213 0.787 40 H 0.175 0.825 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.286 9.825 -25.634 27.785 hybrid contribution 0.544 0.513 -0.208 0.776 sum 4.830 10.338 -25.842 28.249 Atomic orbital electron populations 1.22216 0.97110 1.01662 1.00600 1.21080 0.92957 0.95191 0.85924 0.93625 1.22217 0.97304 0.91055 0.86577 0.88108 1.45919 1.67733 1.16372 1.05709 1.18028 0.78221 0.87077 0.82504 1.90818 1.47554 1.19892 1.82257 1.19933 1.02974 0.94734 0.93383 1.21606 0.95127 0.92067 1.00723 1.20999 0.99413 1.00559 0.91095 1.21078 0.99318 0.93197 0.98111 1.17498 1.06181 0.94999 0.79350 1.44774 1.39936 1.11670 1.06545 1.23849 1.07914 1.01568 0.86520 1.23700 1.04286 0.91371 1.00592 1.75175 1.15222 1.20926 1.01548 1.78489 1.17684 1.03126 1.05817 1.21069 0.94718 1.00423 0.90197 1.23148 0.97499 1.00201 0.97163 1.21970 0.95313 0.91158 0.93002 1.44819 1.57511 1.28888 1.01453 1.18559 1.42746 0.96757 0.78566 0.88961 1.24990 1.00028 0.97693 0.94838 1.69831 1.50595 1.34022 1.00591 0.87018 0.78283 0.87383 0.76209 1.21181 1.23031 1.20133 0.91885 0.94047 0.92972 0.76441 0.84122 0.83585 0.84281 0.78825 0.78708 0.82547 0.90850 0.91122 0.91841 0.95399 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.14 37.16 0.34 -2.38 16 2 C 0.16 2.80 3.48 -66.95 -0.23 2.56 16 3 H 0.05 0.77 7.72 -51.93 -0.40 0.37 16 4 C 0.13 2.11 2.84 -66.09 -0.19 1.92 16 5 H 0.10 1.74 7.26 -51.93 -0.38 1.37 16 6 N -0.71 -8.68 5.13 -52.97 -0.27 -8.95 16 7 C 0.56 7.33 7.77 -12.33 -0.10 7.24 16 8 O -0.53 -9.08 15.99 5.33 0.09 -8.99 16 9 C -0.11 -1.06 5.87 -104.99 -0.62 -1.68 16 10 C -0.08 -0.50 9.54 -39.17 -0.37 -0.87 16 11 C -0.10 -0.48 10.02 -39.67 -0.40 -0.87 16 12 C -0.10 -0.51 9.45 -39.32 -0.37 -0.88 16 13 C 0.11 0.97 6.66 -83.62 -0.56 0.41 16 14 N -0.24 -2.35 3.56 -10.50 -0.04 -2.38 16 15 C -0.05 -0.33 10.91 -16.67 -0.18 -0.51 16 16 C -0.04 -0.33 12.05 -17.73 -0.21 -0.55 16 17 N -0.26 -3.16 12.39 30.24 0.37 -2.78 16 18 N -0.07 -0.93 12.42 60.35 0.75 -0.18 16 19 C -0.04 -0.46 9.16 -38.99 -0.36 -0.82 16 20 C -0.14 -2.37 6.77 -24.58 -0.17 -2.54 16 21 C 0.11 2.35 4.69 -2.53 -0.01 2.34 16 22 N -0.60 -13.64 2.94 -162.57 -0.48 -14.12 16 23 C -0.24 -6.45 10.17 -15.06 -0.15 -6.60 16 24 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 25 C 0.02 0.66 5.43 -17.43 -0.09 0.57 16 26 N -0.91 -27.30 13.97 55.49 0.78 -26.52 16 27 Si 0.88 22.31 24.27 -169.99 -4.13 18.18 16 28 H -0.28 -6.96 6.49 56.52 0.37 -6.60 16 29 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 30 H -0.28 -6.93 6.66 56.52 0.38 -6.56 16 31 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 3.72 6.40 -40.82 -0.26 3.46 16 35 H 0.14 0.63 6.40 -52.49 -0.34 0.29 16 36 H 0.15 0.26 8.06 -52.49 -0.42 -0.17 16 37 H 0.14 0.30 6.77 -52.49 -0.36 -0.05 16 38 H 0.19 0.34 7.12 -52.49 -0.37 -0.03 16 39 H 0.20 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.16 1.99 7.29 -52.49 -0.38 1.61 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.43 6.64 -51.93 -0.34 1.09 16 44 H 0.03 0.63 5.58 -51.93 -0.29 0.34 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -35.77 369.15 -6.73 -42.50 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.69 Total: 0.35 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -3.67 Total: -2.67 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 1.11 Total: -54.94 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.13 Total: 18.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.77 -6.73 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089077662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.640 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds