Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.87969 * 2 1 4 4 C 1.54322 * 109.88092 * 238.82279 * 2 1 3 5 5 H 1.09003 * 110.72343 * 336.75886 * 4 2 1 6 6 N 1.46497 * 110.72178 * 100.02645 * 4 2 1 7 7 C 1.34771 * 120.00481 * 205.00034 * 6 4 2 8 8 O 1.21579 * 119.99832 * 0.02562 * 7 6 4 9 9 C 1.47628 * 120.00257 * 180.02562 * 7 6 4 10 10 C 1.39627 * 120.18881 * 54.62583 * 9 7 6 11 11 C 1.37857 * 119.91407 * 179.74449 * 10 9 7 12 12 C 1.38510 * 120.30207 * 0.51148 * 11 10 9 13 13 C 1.38102 * 120.38545 * 359.76444 * 12 11 10 14 14 C 1.38726 * 120.07481 * 359.97438 * 13 12 11 15 15 N 1.39803 * 120.14861 * 180.02562 * 14 13 12 16 16 C 1.36327 * 126.87048 * 6.30460 * 15 14 13 17 17 C 1.34964 * 106.77726 * 179.97438 * 16 15 14 18 18 N 1.33371 * 109.01813 * 0.02562 * 17 16 15 19 19 N 1.28766 * 109.92875 * 359.72288 * 18 17 16 20 20 C 1.55154 * 102.94611 * 218.39559 * 4 2 1 21 21 C 1.54913 * 101.58235 * 35.49763 * 20 4 2 22 22 N 1.47027 * 109.87928 * 121.02093 * 2 1 3 23 23 C 1.36935 * 125.64498 * 298.08514 * 22 2 1 24 24 H 1.08001 * 120.00393 * 359.97438 * 23 22 2 25 25 C 1.38813 * 119.99741 * 180.02562 * 23 22 2 26 26 N 1.31618 * 120.00383 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99776 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47081 * 89.99836 * 27 25 23 29 29 H 1.48505 * 109.47097 * 209.99510 * 27 25 23 30 30 H 1.48497 * 109.47313 * 329.99549 * 27 25 23 31 31 H 1.09007 * 109.46486 * 300.43951 * 1 2 3 32 32 H 1.08997 * 109.46825 * 60.43016 * 1 2 3 33 33 H 1.08999 * 109.47434 * 180.43981 * 1 2 3 34 34 H 0.97003 * 119.99660 * 25.00776 * 6 4 2 35 35 H 1.07998 * 120.04104 * 359.97438 * 10 9 7 36 36 H 1.07999 * 119.85072 * 180.22744 * 11 10 9 37 37 H 1.07997 * 119.80798 * 179.74190 * 12 11 10 38 38 H 1.07995 * 119.96177 * 180.02562 * 13 12 11 39 39 H 1.07994 * 126.61104 * 359.94794 * 16 15 14 40 40 H 1.08001 * 125.48703 * 180.02562 * 17 16 15 41 41 H 1.08995 * 111.00775 * 153.57508 * 20 4 2 42 42 H 1.09005 * 111.00442 * 277.42798 * 20 4 2 43 43 H 1.08998 * 110.36999 * 204.15186 * 21 20 4 44 44 H 1.09006 * 110.36289 * 81.83482 * 21 20 4 45 45 H 0.97000 * 120.00494 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0548 -0.7513 -1.2416 5 1 1.3050 -1.4482 -1.6163 6 7 2.4554 0.1928 -2.2878 7 6 2.4581 -0.1934 -3.5790 8 8 2.1276 -1.3252 -3.8757 9 6 2.8624 0.7578 -4.6331 10 6 4.0975 1.4048 -4.5589 11 6 4.4715 2.2880 -5.5492 12 6 3.6229 2.5452 -6.6132 13 6 2.3961 1.9166 -6.6961 14 6 2.0060 1.0208 -5.7112 15 7 0.7646 0.3832 -5.7938 16 6 -0.1182 0.4427 -6.8310 17 6 -1.1769 -0.3198 -6.4857 18 7 -0.9635 -0.8372 -5.2751 19 7 0.1805 -0.4506 -4.8280 20 6 3.2875 -1.5154 -0.6903 21 6 2.8144 -1.8785 0.7394 22 7 2.0300 -0.7126 1.1849 23 6 1.8087 -0.3498 2.4867 24 1 1.2220 0.5290 2.7101 25 6 2.3393 -1.1109 3.5191 26 7 3.0547 -2.1817 3.2469 27 14 2.0368 -0.6164 5.2949 28 1 0.7956 -1.2676 5.7855 29 1 3.1857 -1.0475 6.1313 30 1 1.8887 0.8587 5.3796 31 1 -0.3632 0.5207 0.8861 32 1 -0.3633 0.5071 -0.8938 33 1 -0.3634 -1.0276 0.0079 34 1 2.7189 1.0958 -2.0511 35 1 4.7605 1.2108 -3.7288 36 1 5.4286 2.7851 -5.4927 37 1 3.9223 3.2417 -7.3824 38 1 1.7400 2.1219 -7.5289 39 1 0.0056 0.9941 -7.7512 40 1 -2.0553 -0.4844 -7.0921 41 1 3.4850 -2.4130 -1.2763 42 1 4.1654 -0.8700 -0.6592 43 1 3.6715 -2.0321 1.3951 44 1 2.1885 -2.7706 0.7167 45 1 3.4252 -2.7138 3.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089080188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 141.878579 kcal Electronic energy + Delta-G solvation = -29749.064217 eV Core-core repulsion = 25770.596941 eV Total energy + Delta-G solvation = -3978.467276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.34172 -40.23716 -38.80938 -37.31483 -34.78147 -33.90013 -32.30787 -31.53544 -30.83125 -30.29080 -29.91478 -28.49402 -25.39485 -24.38162 -24.00799 -23.86100 -21.96181 -21.61143 -20.53401 -20.07449 -19.70973 -18.71064 -17.46451 -16.74221 -16.11751 -15.85773 -15.80338 -15.63610 -15.28130 -14.73697 -14.51788 -14.36204 -14.01071 -13.91152 -13.79142 -13.33622 -13.23129 -12.73492 -12.49388 -12.07762 -11.99628 -11.89919 -11.54114 -11.46855 -11.35573 -11.21795 -11.07899 -10.82414 -10.77763 -10.46830 -10.35968 -10.06335 -9.75849 -9.66995 -9.57272 -9.49568 -9.46128 -8.76561 -8.62993 -8.49499 -6.82950 -5.61666 -3.04186 0.15112 0.62590 1.61857 1.93037 2.45290 2.82168 3.17999 3.41757 3.43486 3.47424 3.48900 4.01436 4.18950 4.40945 4.51023 4.54957 4.63172 4.78928 4.81667 4.94084 5.02253 5.19244 5.30642 5.41725 5.47323 5.62027 5.69370 5.69653 5.77702 5.88970 5.92614 5.99379 6.12665 6.20237 6.32816 6.41159 6.44773 6.55701 6.62058 6.69359 6.78361 6.95867 7.20076 7.57293 7.66605 7.77913 7.89202 8.05177 8.38441 8.48573 9.24634 9.85546 10.50019 11.41672 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002922 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.225389 B = 9579.006670 C =10472.129719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 H 0.034 0.966 4 C 0.139 3.861 5 H 0.097 0.903 6 N -0.706 5.706 7 C 0.558 3.442 8 O -0.505 6.505 9 C -0.115 4.115 10 C -0.068 4.068 11 C -0.121 4.121 12 C -0.081 4.081 13 C -0.135 4.135 14 C 0.181 3.819 15 N -0.329 5.329 16 C 0.009 3.991 17 C -0.072 4.072 18 N -0.237 5.237 19 N -0.005 5.005 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.219 4.219 24 H 0.077 0.923 25 C -0.011 4.011 26 N -0.921 5.921 27 Si 0.913 3.087 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.396 0.604 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.193 0.807 40 H 0.188 0.812 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.014 0.986 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 12.078 -24.695 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.051 0.949 4 C 0.034 3.966 5 H 0.115 0.885 6 N -0.356 5.356 7 C 0.342 3.658 8 O -0.379 6.379 9 C -0.121 4.121 10 C -0.087 4.087 11 C -0.140 4.140 12 C -0.100 4.100 13 C -0.156 4.156 14 C 0.087 3.913 15 N -0.111 5.111 16 C -0.139 4.139 17 C -0.226 4.226 18 N -0.108 5.108 19 N 0.016 4.984 20 C -0.193 4.193 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.347 4.347 24 H 0.095 0.905 25 C -0.206 4.206 26 N -0.570 5.570 27 Si 0.744 3.256 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.208 1.208 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.230 0.770 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.210 0.790 40 H 0.205 0.795 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.126 0.874 44 H 0.033 0.967 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.867 10.473 -23.279 25.542 hybrid contribution -0.187 1.179 -0.161 1.205 sum 0.681 11.652 -23.440 26.185 Atomic orbital electron populations 1.22216 0.97819 1.01482 0.99796 1.20980 0.92658 0.94629 0.86921 0.94860 1.22160 0.97640 0.90758 0.86014 0.88488 1.45930 1.67947 1.16078 1.05656 1.17758 0.78407 0.87256 0.82368 1.90836 1.45637 1.19536 1.81898 1.19918 0.95711 1.00174 0.96297 1.21318 0.94239 0.93878 0.99228 1.21256 1.00437 0.98277 0.94029 1.21141 0.92515 0.98210 0.98149 1.20832 0.98584 0.97677 0.98488 1.17441 0.82887 0.94806 0.96143 1.48077 1.13725 1.34433 1.14837 1.23472 0.91348 1.03800 0.95281 1.23259 1.01583 1.02323 0.95396 1.74461 1.08562 1.17746 1.10020 1.82721 1.01662 1.04575 1.09409 1.23408 0.96752 0.99304 0.99831 1.21940 0.97325 0.88416 0.89471 1.44489 1.59298 1.28195 1.00064 1.19026 1.27159 1.07921 0.80576 0.90507 1.24779 1.00465 0.97405 0.97981 1.69797 1.39357 1.17741 1.30070 0.86090 0.77229 0.77688 0.84581 1.21661 1.21718 1.20758 0.92877 0.94359 0.92875 0.77031 0.83930 0.84447 0.84373 0.84531 0.79042 0.79478 0.92050 0.92095 0.87370 0.96749 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.14 37.16 0.34 -2.76 16 2 C 0.16 3.28 3.48 -66.95 -0.23 3.05 16 3 H 0.03 0.68 7.72 -51.93 -0.40 0.28 16 4 C 0.14 2.68 2.84 -66.10 -0.19 2.49 16 5 H 0.10 2.10 7.26 -51.93 -0.38 1.72 16 6 N -0.71 -11.17 5.15 -53.04 -0.27 -11.44 16 7 C 0.56 9.10 5.92 -12.43 -0.07 9.03 16 8 O -0.51 -10.26 14.22 5.30 0.08 -10.19 16 9 C -0.12 -1.44 5.65 -104.82 -0.59 -2.03 16 10 C -0.07 -0.61 9.73 -39.20 -0.38 -0.99 16 11 C -0.12 -0.77 10.02 -39.62 -0.40 -1.16 16 12 C -0.08 -0.45 10.03 -39.53 -0.40 -0.85 16 13 C -0.13 -0.97 9.47 -39.45 -0.37 -1.34 16 14 C 0.18 2.07 6.69 -83.32 -0.56 1.51 16 15 N -0.33 -4.33 3.82 -10.32 -0.04 -4.37 16 16 C 0.01 0.09 10.92 -16.72 -0.18 -0.10 16 17 C -0.07 -0.79 11.86 -18.05 -0.21 -1.00 16 18 N -0.24 -3.83 12.33 30.09 0.37 -3.46 16 19 N -0.01 -0.09 9.56 60.35 0.58 0.48 16 20 C -0.15 -3.12 6.77 -24.58 -0.17 -3.29 16 21 C 0.15 3.83 5.89 -2.53 -0.01 3.81 16 22 N -0.60 -15.18 3.12 -162.57 -0.51 -15.69 16 23 C -0.22 -6.04 9.88 -15.06 -0.15 -6.19 16 24 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 25 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 26 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 27 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 31 H 0.05 1.08 8.03 -51.92 -0.42 0.67 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 5.27 8.33 -40.82 -0.34 4.93 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 38 H 0.14 0.57 6.88 -52.49 -0.36 0.21 16 39 H 0.19 0.76 7.21 -52.49 -0.38 0.38 16 40 H 0.19 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.11 2.99 5.87 -51.93 -0.31 2.69 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -36.49 373.34 -8.24 -44.73 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.93 Total: 3.79 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -3.68 Total: -0.22 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.69 Total: -60.88 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.49 -8.24 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089080188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.607 kcal (2) G-P(sol) polarization free energy of solvation -36.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds