Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.63733 * 2 1 4 4 C 1.54323 * 110.71964 * 236.66759 * 2 1 3 5 5 N 1.47032 * 107.26729 * 219.44285 * 4 2 1 6 6 C 1.36934 * 125.64444 * 178.92026 * 5 4 2 7 7 H 1.08007 * 119.99620 * 180.02562 * 6 5 4 8 8 C 1.38807 * 120.00410 * 0.02562 * 6 5 4 9 9 N 1.31620 * 120.00248 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00205 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46976 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47279 * 119.99965 * 10 8 6 13 13 H 1.48504 * 109.47153 * 239.99985 * 10 8 6 14 14 C 1.47427 * 108.70337 * 358.93985 * 5 4 2 15 15 C 1.54916 * 104.82901 * 24.12950 * 14 5 4 16 16 H 1.08998 * 111.03496 * 81.08074 * 15 14 5 17 17 C 1.53008 * 110.99737 * 204.91405 * 15 14 5 18 18 N 1.46500 * 109.47092 * 287.19508 * 17 15 14 19 19 C 1.34776 * 119.99780 * 180.02562 * 18 17 15 20 20 O 1.21480 * 120.00055 * 359.97438 * 19 18 17 21 21 C 1.48434 * 120.00093 * 180.02562 * 19 18 17 22 22 N 1.33492 * 119.22017 * 359.97438 * 21 19 18 23 23 N 1.28918 * 122.02562 * 180.02562 * 22 21 19 24 24 C 1.33816 * 119.74668 * 359.97438 * 23 22 21 25 25 C 1.40334 * 121.78758 * 179.97438 * 24 23 22 26 26 C 1.36182 * 119.62601 * 180.02562 * 25 24 23 27 27 C 1.39445 * 121.07144 * 359.97438 * 26 25 24 28 28 C 1.36128 * 121.01434 * 0.02562 * 27 26 25 29 29 C 1.40512 * 119.56483 * 359.97438 * 28 27 26 30 30 N 1.32052 * 119.22094 * 179.97438 * 21 19 18 31 31 H 1.09000 * 109.47132 * 296.85784 * 1 2 3 32 32 H 1.08999 * 109.46760 * 56.85626 * 1 2 3 33 33 H 1.08995 * 109.46706 * 176.85305 * 1 2 3 34 34 H 1.08992 * 109.88312 * 338.85571 * 4 2 1 35 35 H 1.08995 * 109.88441 * 99.87474 * 4 2 1 36 36 H 0.96995 * 120.00498 * 180.02562 * 9 8 6 37 37 H 1.08994 * 110.36792 * 265.28991 * 14 5 4 38 38 H 1.08994 * 110.36253 * 142.96797 * 14 5 4 39 39 H 1.09005 * 109.46725 * 167.19842 * 17 15 14 40 40 H 1.08997 * 109.46894 * 47.19885 * 17 15 14 41 41 H 0.96998 * 120.00296 * 0.02562 * 18 17 15 42 42 H 1.08002 * 120.18513 * 0.02562 * 25 24 23 43 43 H 1.07998 * 119.46763 * 179.97438 * 26 25 24 44 44 H 1.08005 * 119.49287 * 179.72470 * 27 26 25 45 45 H 1.08002 * 120.22060 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2060 5 7 3.2446 -1.5519 -0.7364 6 6 4.0037 -2.4002 -1.4975 7 1 4.8458 -2.9135 -1.0570 8 6 3.6911 -2.6004 -2.8350 9 7 2.6646 -1.9753 -3.3716 10 14 4.7262 -3.7582 -3.8730 11 1 5.8130 -4.3323 -3.0397 12 1 3.8706 -4.8539 -4.3950 13 1 5.3184 -3.0082 -5.0098 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7934 1.2151 16 1 1.4448 -1.6508 1.4406 17 6 2.2278 0.1121 2.4394 18 7 2.6328 -0.6920 3.5951 19 6 2.8249 -0.1027 4.7919 20 8 2.6628 1.0952 4.9122 21 6 3.2359 -0.9173 5.9628 22 7 3.4102 -2.2322 5.8130 23 7 3.7658 -2.9908 6.7928 24 6 3.9710 -2.4590 8.0035 25 6 4.3584 -3.2446 9.1000 26 6 4.5548 -2.6574 10.3129 27 6 4.3778 -1.2850 10.4852 28 6 4.0026 -0.4902 9.4457 29 6 3.7905 -1.0598 8.1788 30 7 3.4203 -0.3240 7.1280 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3632 -1.0261 -0.0564 34 1 1.3131 -1.4784 -1.5751 35 1 2.3716 -0.1058 -1.9986 36 1 2.4459 -2.1155 -4.3061 37 1 4.1932 -0.4465 0.7993 38 1 3.7961 -2.1405 1.2205 39 1 1.2748 0.5973 2.6504 40 1 2.9854 0.8702 2.2407 41 1 2.7627 -1.6484 3.4990 42 1 4.4999 -4.3088 8.9825 43 1 4.8524 -3.2644 11.1551 44 1 4.5361 -0.8466 11.4595 45 1 3.8688 0.5712 9.5937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092829752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = 90.091131 kcal Electronic energy + Delta-G solvation = -28305.595186 eV Core-core repulsion = 24324.882237 eV Total energy + Delta-G solvation = -3980.712949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.46709 -39.82806 -38.51355 -37.94247 -35.76763 -34.75740 -33.05682 -32.47324 -31.51054 -30.70218 -29.44216 -27.01560 -26.20255 -25.78363 -24.87614 -23.13490 -22.91213 -21.60717 -20.06440 -19.83722 -19.67386 -18.98547 -17.84123 -16.80521 -16.59510 -16.53274 -15.99136 -15.50415 -15.28857 -14.94149 -14.79527 -14.30575 -13.90351 -13.69628 -13.48471 -13.31074 -13.00356 -12.90779 -12.86051 -12.57988 -12.50007 -12.39421 -11.96940 -11.81052 -11.68080 -11.37479 -11.19411 -10.79166 -10.76787 -10.53534 -10.16359 -10.09730 -9.95568 -9.89424 -9.82548 -9.69635 -9.54342 -9.33342 -9.05924 -8.57552 -6.79637 -5.68189 -3.01398 -0.79007 -0.38119 1.09466 1.80818 2.43511 2.71273 3.00590 3.35805 3.39588 3.42046 3.47690 3.50060 3.68174 3.94373 4.10313 4.36199 4.51831 4.54644 4.60342 4.90503 5.08151 5.14113 5.21076 5.28669 5.33826 5.35157 5.54854 5.58146 5.58455 5.76394 5.84559 5.88003 6.03544 6.07665 6.20129 6.28148 6.31638 6.38498 6.50716 6.62099 6.65514 6.77289 6.97051 7.31680 7.60681 7.67125 7.76703 7.87273 7.97568 8.29183 9.25513 9.85725 10.51788 11.43545 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002215 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.065493 B =12639.035418 C =13942.060471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.226 4.226 7 H 0.078 0.922 8 C -0.010 4.010 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.140 3.860 15 C -0.114 4.114 16 H 0.083 0.917 17 C 0.132 3.868 18 N -0.696 5.696 19 C 0.585 3.415 20 O -0.504 6.504 21 C 0.221 3.779 22 N -0.231 5.231 23 N -0.137 5.137 24 C 0.018 3.982 25 C -0.066 4.066 26 C -0.091 4.091 27 C -0.072 4.072 28 C -0.087 4.087 29 C 0.132 3.868 30 N -0.396 5.396 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.251 0.749 37 H 0.020 0.980 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.414 0.586 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 0.587 29.228 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.087 0.913 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.354 4.354 7 H 0.096 0.904 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.014 3.986 15 C -0.134 4.134 16 H 0.102 0.898 17 C 0.009 3.991 18 N -0.349 5.349 19 C 0.364 3.636 20 O -0.376 6.376 21 C -0.051 4.051 22 N -0.093 5.093 23 N 0.000 5.000 24 C -0.114 4.114 25 C -0.088 4.088 26 C -0.112 4.112 27 C -0.094 4.094 28 C -0.106 4.106 29 C -0.007 4.007 30 N -0.118 5.118 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.251 0.749 42 H 0.170 0.830 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.051 1.141 28.095 28.119 hybrid contribution 0.770 -0.764 0.123 1.092 sum 0.820 0.377 28.218 28.233 Atomic orbital electron populations 1.21704 0.95278 1.01687 1.00571 1.22447 0.95185 0.99133 0.96207 0.91327 1.21218 0.89118 0.93081 0.90679 1.44469 1.32613 1.51409 1.04739 1.19106 1.07526 1.17454 0.91311 0.90418 1.24800 0.98480 1.00389 0.96923 1.69969 1.28800 1.45633 1.12559 0.86050 0.79285 0.80141 0.80336 1.20531 1.21789 1.21821 1.21608 0.92898 0.97250 0.86870 1.22702 0.99695 0.98136 0.92830 0.89821 1.21581 1.00565 0.93814 0.83167 1.45913 1.67536 1.13332 1.08099 1.16960 0.79097 0.86172 0.81390 1.90825 1.49902 1.13267 1.83597 1.24494 0.96404 0.90200 0.94003 1.74004 1.07973 1.03940 1.23349 1.74531 1.02329 1.27261 0.95887 1.21038 1.00517 0.93869 0.96009 1.20843 0.96881 1.00877 0.90148 1.21259 0.97120 0.95148 0.97634 1.21279 0.94998 0.93606 0.99540 1.20946 0.98629 1.01807 0.89226 1.19765 0.95745 0.90516 0.94635 1.69100 1.06793 1.37635 0.98250 0.93646 0.92740 0.92653 0.93267 0.94016 0.93850 0.96276 0.94326 0.90957 0.90708 0.74924 0.82996 0.83634 0.83599 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.16 37.16 0.34 -1.75 16 2 C -0.11 -1.98 3.02 -88.79 -0.27 -2.25 16 3 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 4 C 0.18 4.40 4.97 -3.06 -0.02 4.39 16 5 N -0.61 -15.45 3.39 -170.07 -0.58 -16.03 16 6 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 7 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -27.18 10.31 55.49 0.57 -26.61 16 10 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.14 2.85 6.65 -2.52 -0.02 2.83 16 15 C -0.11 -1.90 2.50 -88.47 -0.22 -2.12 16 16 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 17 C 0.13 1.92 5.13 -4.04 -0.02 1.90 16 18 N -0.70 -9.81 5.49 -61.06 -0.34 -10.14 16 19 C 0.58 9.01 7.85 -12.06 -0.09 8.91 16 20 O -0.50 -9.07 16.86 5.38 0.09 -8.98 16 21 C 0.22 3.19 7.65 -156.57 -1.20 1.99 16 22 N -0.23 -3.18 10.72 32.10 0.34 -2.83 16 23 N -0.14 -1.70 11.68 32.28 0.38 -1.32 16 24 C 0.02 0.19 6.68 -84.71 -0.57 -0.38 16 25 C -0.07 -0.39 10.00 -39.53 -0.40 -0.79 16 26 C -0.09 -0.31 9.95 -39.87 -0.40 -0.71 16 27 C -0.07 -0.26 9.95 -39.89 -0.40 -0.66 16 28 C -0.09 -0.58 10.01 -39.48 -0.40 -0.98 16 29 C 0.13 1.42 6.61 -84.77 -0.56 0.86 16 30 N -0.40 -5.44 10.22 -8.99 -0.09 -5.54 16 31 H 0.04 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.88 8.06 -51.93 -0.42 0.47 16 34 H 0.05 1.30 7.00 -51.93 -0.36 0.94 16 35 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 41 H 0.41 5.46 7.78 -40.82 -0.32 5.14 16 42 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 44 H 0.15 0.06 8.06 -52.48 -0.42 -0.37 16 45 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -34.74 378.59 -9.46 -44.20 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.07 Total: -0.15 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -4.45 Total: 4.39 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.29 Total: -62.47 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.74 -9.46 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092829752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.294 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds