Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.37363 * 2 1 4 4 C 1.53997 * 110.32727 * 237.80093 * 2 1 3 5 5 N 1.47483 * 107.08762 * 242.41816 * 4 2 1 6 6 C 1.34779 * 127.03375 * 154.52062 * 5 4 2 7 7 O 1.21282 * 119.99922 * 180.02562 * 6 5 4 8 8 C 1.50699 * 120.00037 * 0.02562 * 6 5 4 9 9 S 1.81000 * 109.46881 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99929 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99720 * 359.97438 * 10 9 8 12 12 C 1.38796 * 119.99847 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00398 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99778 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47405 * 89.99756 * 14 12 10 16 16 H 1.48503 * 109.46936 * 210.00169 * 14 12 10 17 17 H 1.48506 * 109.47119 * 329.99794 * 14 12 10 18 18 C 1.48118 * 105.93194 * 334.77900 * 5 4 2 19 19 C 1.54594 * 103.42006 * 39.02239 * 18 5 4 20 20 H 1.09003 * 110.57034 * 81.17276 * 19 18 5 21 21 C 1.52999 * 110.98931 * 204.36992 * 19 18 5 22 22 N 1.46897 * 109.47335 * 288.65495 * 21 19 18 23 23 C 1.46905 * 110.99986 * 179.97438 * 22 21 19 24 24 H 1.08998 * 110.43168 * 36.09143 * 23 22 21 25 25 C 1.54632 * 110.48323 * 158.77398 * 23 22 21 26 26 C 1.54482 * 101.76281 * 143.47873 * 25 23 22 27 27 N 1.46767 * 105.47447 * 334.58261 * 26 25 23 28 28 C 1.34419 * 111.29819 * 17.01544 * 27 26 25 29 29 O 1.21287 * 124.93992 * 179.55843 * 28 27 26 30 30 H 1.08996 * 109.47504 * 180.74104 * 1 2 3 31 31 H 1.09002 * 109.47128 * 300.74633 * 1 2 3 32 32 H 1.09006 * 109.46790 * 60.74136 * 1 2 3 33 33 H 1.09000 * 109.91495 * 123.05701 * 4 2 1 34 34 H 1.08997 * 110.07710 * 1.86917 * 4 2 1 35 35 H 1.09000 * 109.47247 * 60.00371 * 8 6 5 36 36 H 1.09001 * 109.47358 * 299.99798 * 8 6 5 37 37 H 0.96996 * 120.00393 * 180.02562 * 13 12 10 38 38 H 1.08996 * 110.65997 * 157.50711 * 18 5 4 39 39 H 1.09000 * 110.66189 * 280.62142 * 18 5 4 40 40 H 1.09000 * 109.46758 * 48.65669 * 21 19 18 41 41 H 1.09000 * 109.47278 * 168.64990 * 21 19 18 42 42 H 1.00900 * 111.00130 * 56.04793 * 22 21 19 43 43 H 1.08999 * 110.96912 * 261.59359 * 25 23 22 44 44 H 1.08996 * 110.96920 * 25.35870 * 25 23 22 45 45 H 1.09001 * 110.24361 * 215.57954 * 26 25 23 46 46 H 1.09003 * 110.32061 * 93.62156 * 26 25 23 47 47 H 0.96996 * 124.35004 * 197.04593 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0650 -0.7695 -1.2220 5 7 2.8276 -1.9225 -0.7082 6 6 3.0612 -3.0888 -1.3421 7 8 3.7090 -3.9566 -0.7960 8 6 2.5177 -3.3144 -2.7294 9 16 2.9964 -4.9626 -3.3042 10 6 2.2519 -4.9578 -4.9012 11 1 1.7025 -4.0913 -5.2383 12 6 2.3706 -6.0682 -5.7255 13 7 3.0398 -7.1245 -5.3145 14 14 1.5819 -6.0629 -7.4189 15 1 2.5479 -5.5307 -8.4133 16 1 1.2006 -7.4489 -7.7917 17 1 0.3700 -5.2048 -7.3978 18 6 3.2788 -1.5391 0.6495 19 6 2.0671 -0.7723 1.2271 20 1 1.3174 -1.4683 1.6036 21 6 2.5053 0.1961 2.3276 22 7 2.8971 -0.5644 3.5217 23 6 3.3254 0.3349 4.6015 24 1 2.7269 1.2458 4.5979 25 6 3.2244 -0.3770 5.9705 26 6 4.4576 0.1871 6.7105 27 7 5.4049 0.5704 5.6571 28 6 4.7949 0.6661 4.4631 29 8 5.3429 0.9740 3.4258 30 1 -0.3634 -1.0275 0.0133 31 1 -0.3633 0.5254 0.8832 32 1 -0.3633 0.5023 -0.8966 33 1 2.7182 -0.1247 -1.8100 34 1 1.2355 -1.1176 -1.8374 35 1 2.9231 -2.5615 -3.4054 36 1 1.4305 -3.2382 -2.7105 37 1 3.1231 -7.9003 -5.8907 38 1 3.4933 -2.4246 1.2478 39 1 4.1523 -0.8894 0.5954 40 1 3.3533 0.7846 1.9771 41 1 1.6789 0.8621 2.5758 42 1 3.6184 -1.2351 3.3027 43 1 2.3027 -0.1047 6.4847 44 1 3.3000 -1.4581 5.8545 45 1 4.8955 -0.5780 7.3515 46 1 4.1781 1.0591 7.3018 47 1 6.3499 0.7332 5.8035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105846244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = -70.440656 kcal Electronic energy + Delta-G solvation = -27184.480321 eV Core-core repulsion = 23299.957392 eV Total energy + Delta-G solvation = -3884.522929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.92279 -39.90933 -37.75762 -36.82697 -35.60252 -32.83952 -32.39851 -31.41351 -30.05036 -28.82257 -26.85143 -26.34676 -25.48422 -24.68604 -22.41313 -21.84226 -20.87275 -20.06248 -19.25690 -17.85859 -17.63695 -17.30713 -16.48348 -16.26701 -15.91975 -15.30851 -14.83529 -14.76965 -14.55211 -14.42266 -14.21989 -14.05649 -13.82383 -13.71597 -13.55805 -13.10458 -12.87725 -12.85693 -12.60290 -12.37290 -12.31926 -11.99928 -11.76286 -11.64292 -11.57028 -11.04018 -10.99538 -10.94790 -10.82868 -10.73879 -10.71402 -10.66338 -9.78160 -9.62281 -9.33346 -9.03767 -8.79407 -8.45737 -8.19327 -6.46573 -6.18552 -3.88891 2.09322 2.85844 2.96956 3.13146 3.24518 3.28507 3.32690 3.54025 3.66826 3.92495 4.03685 4.23130 4.37319 4.40667 4.46034 4.52464 4.65408 4.83887 4.97428 5.03512 5.04520 5.12850 5.16421 5.24513 5.32904 5.35927 5.43352 5.47181 5.52685 5.54626 5.60651 5.72075 5.80562 5.85290 5.92387 5.94566 6.02388 6.14472 6.19439 6.25566 6.48389 6.48918 6.51653 6.82767 7.62511 7.76025 7.79477 8.38345 8.63019 9.26545 10.88908 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022332 B = 0.002032 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.483955 B =13778.308165 C =14473.044827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.105 3.895 5 N -0.627 5.627 6 C 0.552 3.448 7 O -0.517 6.517 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.108 3.892 19 C -0.096 4.096 20 H 0.094 0.906 21 C 0.064 3.936 22 N -0.661 5.661 23 C 0.056 3.944 24 H 0.115 0.885 25 C -0.122 4.122 26 C 0.098 3.902 27 N -0.732 5.732 28 C 0.485 3.515 29 O -0.527 6.527 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.348 0.652 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 20.573 24.825 32.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.019 4.019 5 N -0.363 5.363 6 C 0.341 3.659 7 O -0.391 6.391 8 C -0.296 4.296 9 S 0.166 5.834 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.015 4.015 19 C -0.116 4.116 20 H 0.112 0.888 21 C -0.065 4.065 22 N -0.292 5.292 23 C -0.058 4.058 24 H 0.133 0.867 25 C -0.161 4.161 26 C -0.027 4.027 27 N -0.388 5.388 28 C 0.268 3.732 29 O -0.402 6.402 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.167 0.833 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.574 19.064 25.170 31.679 hybrid contribution 0.108 1.459 -1.894 2.393 sum -2.466 20.523 23.276 31.129 Atomic orbital electron populations 1.21848 0.93864 1.02425 1.01849 1.22074 0.96557 0.99346 0.93817 0.89740 1.22158 0.95930 0.87603 0.96213 1.48760 1.55156 1.15207 1.17221 1.19989 0.79371 0.79523 0.87056 1.90704 1.39193 1.42004 1.67242 1.23499 1.03808 1.07406 0.94923 1.85397 1.71260 1.08924 1.17861 1.22860 1.39456 1.04517 1.01388 0.90948 1.24993 0.95216 0.94577 0.98838 1.70017 1.38808 1.04556 1.36915 0.86168 0.79368 0.77556 0.82403 1.20285 1.20757 1.19694 1.22382 0.96038 0.99283 0.83829 1.22342 0.98163 0.97305 0.93802 0.88802 1.22085 1.00251 0.95278 0.88866 1.60781 1.44052 1.16027 1.08323 1.22389 0.91613 0.98015 0.93805 0.86707 1.22673 0.98004 1.01927 0.93469 1.22152 0.89919 1.00220 0.90420 1.46273 1.12116 1.70995 1.09449 1.22101 0.91420 0.76264 0.83386 1.90793 1.71843 1.47414 1.30141 0.92144 0.92360 0.92301 0.91640 0.90363 0.89364 0.89334 0.92207 0.89911 0.91490 0.93067 0.90445 0.83268 0.88629 0.88975 0.90002 0.90856 0.75275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.90 37.16 0.33 -0.80 16 2 C -0.10 -0.88 3.17 -89.25 -0.28 -1.17 16 3 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 4 C 0.10 1.23 6.42 -2.98 -0.02 1.21 16 5 N -0.63 -9.78 3.29 -169.99 -0.56 -10.34 16 6 C 0.55 11.31 7.91 -10.99 -0.09 11.22 16 7 O -0.52 -12.60 16.07 5.56 0.09 -12.51 16 8 C -0.15 -3.13 5.23 36.01 0.19 -2.95 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.93 16 10 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 14 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 C 0.11 1.42 5.94 -2.31 -0.01 1.40 16 19 C -0.10 -0.94 2.80 -88.93 -0.25 -1.19 16 20 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 21 C 0.06 0.53 4.86 -3.83 -0.02 0.52 16 22 N -0.66 -5.23 6.30 -106.74 -0.67 -5.91 16 23 C 0.06 0.35 3.24 -67.72 -0.22 0.13 16 24 H 0.12 0.62 7.87 -51.93 -0.41 0.21 16 25 C -0.12 -0.45 6.88 -25.10 -0.17 -0.62 16 26 C 0.10 0.28 7.78 -3.12 -0.02 0.25 16 27 N -0.73 -4.20 6.24 -59.20 -0.37 -4.57 16 28 C 0.48 4.29 7.80 -10.86 -0.08 4.21 16 29 O -0.53 -7.02 16.95 5.55 0.09 -6.93 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.91 7.08 -51.93 -0.37 0.54 16 35 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 36 H 0.09 1.76 7.91 -51.91 -0.41 1.35 16 37 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 1.20 7.82 -51.93 -0.41 0.79 16 39 H 0.07 0.89 7.95 -51.93 -0.41 0.47 16 40 H 0.05 0.51 6.98 -51.93 -0.36 0.15 16 41 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 42 H 0.35 3.19 7.90 -39.29 -0.31 2.88 16 43 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.40 8.09 -51.93 -0.42 -0.02 16 45 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 47 H 0.41 1.98 8.96 -40.82 -0.37 1.62 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -37.55 395.04 -10.05 -47.59 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.63 Total: 0.73 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.45 Total: -0.98 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.87 Total: -46.64 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.18 Total: -19.44 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.55 -10.05 -47.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105846244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.848 kcal (2) G-P(sol) polarization free energy of solvation -37.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds