Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 110.77905 * 2 1 4 4 C 1.54324 * 110.71941 * 236.76643 * 2 1 3 5 5 N 1.47026 * 107.26882 * 219.44221 * 4 2 1 6 6 C 1.34784 * 125.64663 * 178.98084 * 5 4 2 7 7 O 1.21548 * 119.99724 * 175.02760 * 6 5 4 8 8 C 1.47842 * 119.99825 * 355.02006 * 6 5 4 9 9 C 1.40605 * 120.27705 * 187.82303 * 8 6 5 10 10 N 1.30814 * 121.52332 * 179.97438 * 9 8 6 11 11 C 1.33759 * 121.79242 * 0.02562 * 10 9 8 12 12 N 1.33895 * 120.61888 * 180.02562 * 11 10 9 13 13 C 1.31330 * 119.84967 * 179.97438 * 12 11 10 14 14 C 1.39759 * 120.77389 * 359.97438 * 13 12 11 15 15 N 1.31310 * 120.55659 * 0.04509 * 14 13 12 16 16 C 1.33662 * 119.70192 * 359.95291 * 15 14 13 17 17 C 1.38898 * 120.28433 * 7.54999 * 8 6 5 18 18 C 1.47420 * 108.70547 * 358.93733 * 5 4 2 19 19 C 1.54914 * 104.82929 * 24.13098 * 18 5 4 20 20 H 1.08997 * 111.00379 * 81.06278 * 19 18 5 21 21 C 1.53001 * 111.00386 * 204.87640 * 19 18 5 22 22 N 1.46495 * 109.46898 * 293.54550 * 21 19 18 23 23 C 1.36938 * 119.99744 * 179.97438 * 22 21 19 24 24 H 1.07999 * 120.00386 * 0.02562 * 23 22 21 25 25 C 1.38814 * 120.00029 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99985 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00270 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47056 * 90.00049 * 27 25 23 29 29 H 1.48502 * 109.47354 * 210.00323 * 27 25 23 30 30 H 1.48499 * 109.46855 * 330.00168 * 27 25 23 31 31 H 1.09001 * 109.46714 * 181.78011 * 1 2 3 32 32 H 1.08991 * 109.47163 * 301.78198 * 1 2 3 33 33 H 1.09001 * 109.46937 * 61.78305 * 1 2 3 34 34 H 1.09003 * 109.88286 * 100.02713 * 4 2 1 35 35 H 1.08993 * 109.88343 * 338.86006 * 4 2 1 36 36 H 1.08002 * 119.23579 * 0.02811 * 9 8 6 37 37 H 1.08001 * 119.61216 * 180.02562 * 13 12 11 38 38 H 1.08004 * 119.72010 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.99611 * 0.02562 * 17 8 6 40 40 H 1.08996 * 110.36677 * 142.96522 * 18 5 4 41 41 H 1.08997 * 110.36817 * 265.18293 * 18 5 4 42 42 H 1.09003 * 109.47085 * 53.54659 * 21 19 18 43 43 H 1.09002 * 109.46945 * 173.54599 * 21 19 18 44 44 H 0.97002 * 120.00410 * 359.97438 * 22 21 19 45 45 H 0.96998 * 120.00055 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0192 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 3.2446 -1.5506 -0.7391 6 6 3.9924 -2.3834 -1.4900 7 8 4.9924 -2.8913 -1.0215 8 6 3.5964 -2.6791 -2.8833 9 6 4.2734 -3.6685 -3.6180 10 7 3.9430 -3.9503 -4.8519 11 6 2.9470 -3.3135 -5.4778 12 7 2.6283 -3.6213 -6.7413 13 6 1.6473 -2.9867 -7.3411 14 6 0.9276 -1.9905 -6.6757 15 7 1.2208 -1.6698 -5.4366 16 6 2.2153 -2.3025 -4.8063 17 6 2.5487 -1.9859 -3.4759 18 6 3.4634 -1.2498 0.6874 19 6 2.0790 -0.7955 1.2137 20 1 1.4453 -1.6536 1.4373 21 6 2.2278 0.1071 2.4401 22 7 2.7771 -0.6695 3.5542 23 6 2.9994 -0.0680 4.7642 24 1 2.7694 0.9788 4.8972 25 6 3.5194 -0.8040 5.8200 26 7 3.7992 -2.0799 5.6581 27 14 3.8220 0.0163 7.4708 28 1 2.6047 -0.1024 8.3130 29 1 4.9620 -0.6481 8.1521 30 1 4.1398 1.4514 7.2595 31 1 -0.3633 -1.0272 0.0319 32 1 -0.3633 0.5412 0.8735 33 1 -0.3633 0.4859 -0.9056 34 1 2.3741 -0.1022 -1.9978 35 1 1.3130 -1.4756 -1.5777 36 1 5.0844 -4.2089 -3.1524 37 1 1.3933 -3.2384 -8.3602 38 1 0.1238 -1.4798 -7.1852 39 1 2.0088 -1.2238 -2.9335 40 1 3.7961 -2.1426 1.2167 41 1 4.1947 -0.4491 0.7984 42 1 2.9011 0.9315 2.2050 43 1 1.2518 0.5036 2.7199 44 1 2.9833 -1.6098 3.4349 45 1 4.1622 -2.5943 6.3960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106261055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 89.938523 kcal Electronic energy + Delta-G solvation = -28790.406430 eV Core-core repulsion = 24809.686864 eV Total energy + Delta-G solvation = -3980.719566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19386 -40.55391 -38.76087 -37.78125 -35.63367 -34.81273 -33.31940 -32.38722 -31.61504 -31.41001 -29.18511 -27.23352 -26.31485 -26.01441 -24.95875 -23.42115 -23.17991 -21.60937 -20.77511 -20.10979 -19.66821 -18.56275 -17.70008 -17.20456 -16.85386 -16.28198 -16.04722 -15.72693 -15.57638 -15.15250 -14.77617 -14.48207 -14.34758 -14.02735 -13.52612 -13.41875 -13.23849 -13.16505 -12.97883 -12.92224 -12.47697 -12.30682 -12.24015 -12.14262 -12.04092 -11.39751 -11.18264 -11.10587 -10.90509 -10.67604 -10.51026 -10.47106 -10.20727 -10.03535 -9.82264 -9.69512 -9.64817 -9.20864 -8.90577 -8.77933 -6.95942 -5.78035 -3.07809 -0.59835 -0.23870 1.22544 1.94285 2.65603 2.85201 3.04264 3.35938 3.42840 3.47836 3.49975 3.53307 3.54341 4.03526 4.08652 4.16947 4.33295 4.35341 4.51252 4.57773 4.66993 4.71155 4.81059 4.89281 5.09015 5.09457 5.24812 5.38142 5.41144 5.41678 5.54011 5.62216 5.69735 5.84107 5.89876 5.94256 6.03692 6.09335 6.13367 6.31553 6.32299 6.42899 6.63089 6.75748 6.92038 7.28680 7.43990 7.67824 7.89792 8.39981 9.51386 10.07426 10.41498 11.44503 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.002279 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.601016 B =12284.014770 C =13309.812677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.091 0.909 4 C 0.088 3.912 5 N -0.607 5.607 6 C 0.574 3.426 7 O -0.520 6.520 8 C -0.164 4.164 9 C 0.216 3.784 10 N -0.458 5.458 11 C 0.270 3.730 12 N -0.419 5.419 13 C 0.112 3.888 14 C 0.071 3.929 15 N -0.405 5.405 16 C 0.019 3.981 17 C -0.028 4.028 18 C 0.116 3.884 19 C -0.101 4.101 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.188 0.812 37 H 0.185 0.815 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.901 2.161 -27.207 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.110 0.890 4 C -0.035 4.035 5 N -0.340 5.340 6 C 0.361 3.639 7 O -0.397 6.397 8 C -0.172 4.172 9 C 0.038 3.962 10 N -0.167 5.167 11 C 0.030 3.970 12 N -0.134 5.134 13 C -0.068 4.068 14 C -0.105 4.105 15 N -0.120 5.120 16 C -0.108 4.108 17 C -0.054 4.054 18 C -0.005 4.005 19 C -0.120 4.120 20 H 0.106 0.894 21 C 0.038 3.962 22 N -0.377 5.377 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.205 0.795 37 H 0.202 0.798 38 H 0.201 0.799 39 H 0.205 0.795 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.735 1.270 -27.210 28.316 hybrid contribution -0.290 0.710 1.154 1.385 sum -8.025 1.980 -26.056 27.336 Atomic orbital electron populations 1.21765 0.93456 1.02375 1.02330 1.22290 0.96595 0.99687 0.93227 0.89029 1.22704 0.88083 0.94791 0.97919 1.48447 1.29507 1.43443 1.12595 1.17443 0.83162 0.79151 0.84105 1.90855 1.24739 1.51510 1.72554 1.21231 0.98774 1.00506 0.96655 1.23404 0.95117 0.90353 0.87279 1.67629 1.13645 1.25746 1.09664 1.20197 0.93018 0.92008 0.91734 1.68348 1.13704 1.24173 1.07137 1.24350 0.89797 0.91265 1.01368 1.24240 0.99499 0.95710 0.91094 1.68594 1.11609 1.22733 1.09051 1.20227 0.96482 0.97515 0.96538 1.23402 0.93142 0.97002 0.91873 1.22442 0.97886 1.02292 0.77869 1.22695 0.95185 0.99341 0.94823 0.89448 1.20575 0.96715 0.92883 0.86013 1.42354 1.76824 1.10453 1.08095 1.19189 1.35553 0.94362 0.88238 0.91159 1.24759 1.01903 0.95872 0.98342 1.69657 1.49946 1.06582 1.31743 0.86191 0.77436 0.78350 0.84199 1.21734 1.21752 1.20760 0.92357 0.91356 0.92468 0.90465 0.90355 0.79512 0.79840 0.79916 0.79460 0.89321 0.90426 0.96013 0.95684 0.78201 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.13 37.16 0.34 -0.90 16 2 C -0.10 -1.01 3.02 -88.79 -0.27 -1.28 16 3 H 0.09 0.89 8.04 -51.92 -0.42 0.48 16 4 C 0.09 0.83 4.47 -3.06 -0.01 0.82 16 5 N -0.61 -7.88 3.33 -173.25 -0.58 -8.46 16 6 C 0.57 8.07 7.81 -12.33 -0.10 7.97 16 7 O -0.52 -9.11 16.67 5.32 0.09 -9.02 16 8 C -0.16 -1.91 5.88 -104.83 -0.62 -2.53 16 9 C 0.22 2.53 10.73 -17.09 -0.18 2.35 16 10 N -0.46 -5.94 10.39 -12.27 -0.13 -6.07 16 11 C 0.27 3.29 7.60 -157.60 -1.20 2.09 16 12 N -0.42 -4.50 10.55 -12.39 -0.13 -4.63 16 13 C 0.11 0.66 11.21 -17.20 -0.19 0.47 16 14 C 0.07 0.39 11.22 -17.21 -0.19 0.20 16 15 N -0.41 -3.60 10.46 -10.77 -0.11 -3.71 16 16 C 0.02 0.20 6.59 -84.78 -0.56 -0.36 16 17 C -0.03 -0.28 8.66 -38.38 -0.33 -0.61 16 18 C 0.12 1.79 6.06 -2.53 -0.02 1.77 16 19 C -0.10 -1.44 2.55 -88.47 -0.23 -1.67 16 20 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 21 C 0.17 3.03 5.71 -4.04 -0.02 3.01 16 22 N -0.73 -17.76 5.45 -59.91 -0.33 -18.09 16 23 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 27 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.60 6.80 -51.93 -0.35 0.24 16 35 H 0.08 0.65 6.35 -51.93 -0.33 0.32 16 36 H 0.19 1.94 7.65 -52.49 -0.40 1.54 16 37 H 0.18 0.26 8.06 -52.49 -0.42 -0.16 16 38 H 0.18 0.19 8.06 -52.48 -0.42 -0.24 16 39 H 0.19 1.56 2.88 -54.59 -0.16 1.40 16 40 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 41 H 0.08 1.25 8.01 -51.93 -0.42 0.84 16 42 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.38 9.90 7.53 -40.82 -0.31 9.59 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -35.75 373.23 -9.41 -45.16 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.72 Total: 5.17 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -3.82 Total: 4.11 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -0.55 Total: -68.26 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.75 -9.41 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106261055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.099 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds