Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 110.77905 * 2 1 4 4 C 1.54324 * 110.71941 * 236.76643 * 2 1 3 5 5 N 1.47026 * 107.26882 * 219.44221 * 4 2 1 6 6 C 1.34784 * 125.64663 * 178.98084 * 5 4 2 7 7 O 1.21548 * 119.99724 * 175.02760 * 6 5 4 8 8 C 1.47842 * 119.99825 * 355.02006 * 6 5 4 9 9 C 1.40605 * 120.27705 * 187.82303 * 8 6 5 10 10 N 1.30814 * 121.52332 * 179.97438 * 9 8 6 11 11 C 1.33759 * 121.79242 * 0.02562 * 10 9 8 12 12 N 1.33895 * 120.61888 * 180.02562 * 11 10 9 13 13 C 1.31330 * 119.84967 * 179.97438 * 12 11 10 14 14 C 1.39759 * 120.77389 * 359.97438 * 13 12 11 15 15 N 1.31310 * 120.55659 * 0.04509 * 14 13 12 16 16 C 1.33662 * 119.70192 * 359.95291 * 15 14 13 17 17 C 1.38898 * 120.28433 * 7.54999 * 8 6 5 18 18 C 1.47420 * 108.70547 * 358.93733 * 5 4 2 19 19 C 1.54914 * 104.82929 * 24.13098 * 18 5 4 20 20 H 1.08997 * 111.00379 * 81.06278 * 19 18 5 21 21 C 1.53001 * 111.00386 * 204.87640 * 19 18 5 22 22 N 1.46495 * 109.46898 * 293.54550 * 21 19 18 23 23 C 1.36938 * 119.99744 * 179.97438 * 22 21 19 24 24 H 1.07999 * 120.00386 * 0.02562 * 23 22 21 25 25 C 1.38814 * 120.00029 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99985 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00270 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47056 * 90.00049 * 27 25 23 29 29 H 1.48502 * 109.47354 * 210.00323 * 27 25 23 30 30 H 1.48499 * 109.46855 * 330.00168 * 27 25 23 31 31 H 1.09001 * 109.46714 * 181.78011 * 1 2 3 32 32 H 1.08991 * 109.47163 * 301.78198 * 1 2 3 33 33 H 1.09001 * 109.46937 * 61.78305 * 1 2 3 34 34 H 1.09003 * 109.88286 * 100.02713 * 4 2 1 35 35 H 1.08993 * 109.88343 * 338.86006 * 4 2 1 36 36 H 1.08002 * 119.23579 * 0.02811 * 9 8 6 37 37 H 1.08001 * 119.61216 * 180.02562 * 13 12 11 38 38 H 1.08004 * 119.72010 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.99611 * 0.02562 * 17 8 6 40 40 H 1.08996 * 110.36677 * 142.96522 * 18 5 4 41 41 H 1.08997 * 110.36817 * 265.18293 * 18 5 4 42 42 H 1.09003 * 109.47085 * 53.54659 * 21 19 18 43 43 H 1.09002 * 109.46945 * 173.54599 * 21 19 18 44 44 H 0.97002 * 120.00410 * 359.97438 * 22 21 19 45 45 H 0.96998 * 120.00055 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0192 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 3.2446 -1.5506 -0.7391 6 6 3.9924 -2.3834 -1.4900 7 8 4.9924 -2.8913 -1.0215 8 6 3.5964 -2.6791 -2.8833 9 6 4.2734 -3.6685 -3.6180 10 7 3.9430 -3.9503 -4.8519 11 6 2.9470 -3.3135 -5.4778 12 7 2.6283 -3.6213 -6.7413 13 6 1.6473 -2.9867 -7.3411 14 6 0.9276 -1.9905 -6.6757 15 7 1.2208 -1.6698 -5.4366 16 6 2.2153 -2.3025 -4.8063 17 6 2.5487 -1.9859 -3.4759 18 6 3.4634 -1.2498 0.6874 19 6 2.0790 -0.7955 1.2137 20 1 1.4453 -1.6536 1.4373 21 6 2.2278 0.1071 2.4401 22 7 2.7771 -0.6695 3.5542 23 6 2.9994 -0.0680 4.7642 24 1 2.7694 0.9788 4.8972 25 6 3.5194 -0.8040 5.8200 26 7 3.7992 -2.0799 5.6581 27 14 3.8220 0.0163 7.4708 28 1 2.6047 -0.1024 8.3130 29 1 4.9620 -0.6481 8.1521 30 1 4.1398 1.4514 7.2595 31 1 -0.3633 -1.0272 0.0319 32 1 -0.3633 0.5412 0.8735 33 1 -0.3633 0.4859 -0.9056 34 1 2.3741 -0.1022 -1.9978 35 1 1.3130 -1.4756 -1.5777 36 1 5.0844 -4.2089 -3.1524 37 1 1.3933 -3.2384 -8.3602 38 1 0.1238 -1.4798 -7.1852 39 1 2.0088 -1.2238 -2.9335 40 1 3.7961 -2.1426 1.2167 41 1 4.1947 -0.4491 0.7984 42 1 2.9011 0.9315 2.2050 43 1 1.2518 0.5036 2.7199 44 1 2.9833 -1.6098 3.4349 45 1 4.1622 -2.5943 6.3960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106261055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 63.518198 kcal Electronic energy + Delta-G solvation = -28791.552101 eV Core-core repulsion = 24809.686864 eV Total energy + Delta-G solvation = -3981.865238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.91214 -41.54618 -39.65773 -38.81734 -36.66404 -36.15721 -34.55528 -33.24642 -33.07595 -32.29637 -30.63794 -28.07972 -27.39173 -26.95440 -26.01227 -24.88122 -24.12751 -22.80037 -21.68006 -21.26675 -20.50638 -19.37301 -19.05897 -18.47381 -17.83385 -17.37848 -16.89315 -16.68040 -16.47591 -16.32938 -15.86694 -15.61572 -15.41128 -15.24658 -14.98863 -14.62652 -14.35562 -14.32343 -13.87000 -13.82760 -13.53341 -13.32745 -13.16202 -13.02874 -12.95277 -12.85135 -12.74867 -12.44763 -12.11577 -11.99603 -11.94030 -11.81178 -11.59601 -11.33919 -11.26001 -10.92903 -10.62525 -10.36806 -9.90301 -9.86690 -8.98885 -7.94084 -5.23036 -1.28980 -0.93915 0.51672 1.16272 1.47527 1.49352 1.57712 1.60946 1.93563 2.37221 2.56388 2.70493 2.81157 2.85323 3.19837 3.31635 3.39088 3.40519 3.56908 3.60502 3.76282 3.78842 3.96402 4.11498 4.13839 4.20769 4.28697 4.33961 4.40486 4.49791 4.52537 4.57362 4.75650 4.79551 4.82824 4.86313 5.02065 5.06335 5.17295 5.24479 5.26314 5.37260 5.50203 5.53273 5.79494 6.22759 6.27695 6.30847 6.72520 6.80865 7.34008 8.10585 8.31500 9.29499 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.002279 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.601016 B =12284.014770 C =13309.812677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 H 0.104 0.896 4 C 0.083 3.917 5 N -0.605 5.605 6 C 0.573 3.427 7 O -0.569 6.569 8 C -0.176 4.176 9 C 0.207 3.793 10 N -0.484 5.484 11 C 0.247 3.753 12 N -0.462 5.462 13 C 0.133 3.867 14 C 0.093 3.907 15 N -0.422 5.422 16 C 0.005 3.995 17 C -0.009 4.009 18 C 0.121 3.879 19 C -0.092 4.092 20 H 0.079 0.921 21 C 0.165 3.835 22 N -0.748 5.748 23 C -0.241 4.241 24 H 0.080 0.920 25 C -0.080 4.080 26 N -0.972 5.972 27 Si 0.973 3.027 28 H -0.286 1.286 29 H -0.300 1.300 30 H -0.267 1.267 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.185 0.815 37 H 0.234 0.766 38 H 0.238 0.762 39 H 0.209 0.791 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.036 0.964 44 H 0.372 0.628 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.082 4.675 -30.414 33.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.122 0.878 4 C -0.038 4.038 5 N -0.336 5.336 6 C 0.363 3.637 7 O -0.449 6.449 8 C -0.183 4.183 9 C 0.030 3.970 10 N -0.194 5.194 11 C 0.008 3.992 12 N -0.178 5.178 13 C -0.047 4.047 14 C -0.085 4.085 15 N -0.136 5.136 16 C -0.119 4.119 17 C -0.036 4.036 18 C -0.002 4.002 19 C -0.111 4.111 20 H 0.097 0.903 21 C 0.039 3.961 22 N -0.390 5.390 23 C -0.373 4.373 24 H 0.098 0.902 25 C -0.272 4.272 26 N -0.623 5.623 27 Si 0.802 3.198 28 H -0.213 1.213 29 H -0.226 1.226 30 H -0.192 1.192 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.202 0.798 37 H 0.250 0.750 38 H 0.254 0.746 39 H 0.225 0.775 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.203 0.797 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.944 3.843 -30.417 32.553 hybrid contribution 0.522 -0.011 1.833 1.906 sum -10.422 3.832 -28.584 30.665 Atomic orbital electron populations 1.21768 0.91686 1.02633 1.03548 1.22283 0.97904 0.99542 0.90725 0.87797 1.23016 0.87126 0.95297 0.98323 1.48442 1.30329 1.43463 1.11412 1.17817 0.82501 0.78478 0.84946 1.90819 1.26938 1.53374 1.73757 1.20858 1.00386 1.01906 0.95180 1.23341 0.95463 0.90840 0.87350 1.67576 1.14910 1.26857 1.10020 1.20447 0.93301 0.92738 0.92671 1.68397 1.16194 1.26269 1.06927 1.25334 0.87192 0.89356 1.02827 1.25216 0.99190 0.94293 0.89778 1.68690 1.11219 1.23051 1.10646 1.20223 0.97261 0.97676 0.96723 1.23542 0.91902 0.96271 0.91857 1.22171 0.98422 1.00156 0.79440 1.22513 0.94530 0.99072 0.95026 0.90280 1.20749 0.96522 0.93087 0.85762 1.42619 1.77071 1.10366 1.08986 1.19646 1.33637 0.94738 0.89237 0.90223 1.25601 1.02960 0.96533 1.02074 1.69830 1.51873 1.08137 1.32412 0.85140 0.76843 0.77906 0.79881 1.21317 1.22644 1.19209 0.92508 0.92033 0.89485 0.87476 0.88393 0.79805 0.74994 0.74633 0.77548 0.93161 0.91553 0.95532 0.94647 0.79654 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.13 71.98 0.66 -1.29 16 2 C -0.09 -1.53 3.02 -9.61 -0.03 -1.56 16 3 H 0.10 1.68 8.04 -2.38 -0.02 1.66 16 4 C 0.08 1.38 4.47 86.73 0.39 1.76 16 5 N -0.61 -15.92 3.33 -820.31 -2.73 -18.65 16 6 C 0.57 17.02 7.81 86.78 0.68 17.70 16 7 O -0.57 -21.77 16.67 -3.87 -0.06 -21.83 16 8 C -0.18 -4.23 5.88 -20.00 -0.12 -4.34 16 9 C 0.21 5.23 10.73 85.42 0.92 6.15 16 10 N -0.48 -13.11 10.39 -192.75 -2.00 -15.12 16 11 C 0.25 5.87 7.60 134.96 1.03 6.89 16 12 N -0.46 -9.08 10.55 -193.10 -2.04 -11.12 16 13 C 0.13 1.00 11.21 85.14 0.95 1.95 16 14 C 0.09 0.52 11.22 85.14 0.96 1.48 16 15 N -0.42 -5.84 10.46 -187.98 -1.97 -7.81 16 16 C 0.01 0.11 6.59 40.34 0.27 0.37 16 17 C -0.01 -0.18 8.66 23.05 0.20 0.02 16 18 C 0.12 3.91 6.06 86.86 0.53 4.43 16 19 C -0.09 -2.62 2.55 -9.40 -0.02 -2.64 16 20 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 21 C 0.17 6.00 5.71 86.38 0.49 6.49 16 22 N -0.75 -37.17 5.45 -343.45 -1.87 -39.04 16 23 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 24 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 25 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 26 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 27 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 28 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 29 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 30 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 31 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 1.23 6.80 -2.39 -0.02 1.22 16 35 H 0.10 1.31 6.35 -2.39 -0.02 1.30 16 36 H 0.19 4.45 7.65 -2.91 -0.02 4.42 16 37 H 0.23 -0.76 8.06 -2.91 -0.02 -0.78 16 38 H 0.24 -1.29 8.06 -2.91 -0.02 -1.31 16 39 H 0.21 2.81 2.88 -4.89 -0.01 2.80 16 40 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 41 H 0.07 2.27 8.01 -2.39 -0.02 2.25 16 42 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 43 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.37 20.12 7.53 -92.71 -0.70 19.43 16 45 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -83.97 373.23 0.17 -83.79 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.34 Total: 20.81 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 8.20 Total: 20.84 kcal Atomic # 7 Polarization: -141.73 SS G_CDS: -10.32 Total: -152.05 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -83.97 0.17 -83.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106261055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.309 kcal (2) G-P(sol) polarization free energy of solvation -83.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds