Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46908 * 2 1 4 4 S 1.81397 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.81396 * 102.99966 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46989 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72353 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 110.85718 * 322.67178 * 9 8 6 11 11 C 1.54632 * 110.96962 * 86.45510 * 9 8 6 12 12 C 1.51278 * 104.19463 * 142.91861 * 11 9 8 13 13 O 1.21282 * 124.93916 * 163.71371 * 12 11 9 14 14 N 1.34412 * 110.11694 * 343.74777 * 12 11 9 15 15 C 1.46503 * 124.34978 * 179.57404 * 14 12 11 16 16 C 1.53948 * 113.74317 * 36.64839 * 15 14 12 17 17 N 1.47586 * 86.11585 * 222.04956 * 16 15 14 18 18 C 1.36940 * 134.48731 * 204.63792 * 17 16 15 19 19 H 1.08000 * 119.99688 * 180.02562 * 18 17 16 20 20 C 1.38805 * 120.00168 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00276 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47392 * 59.99522 * 22 20 18 24 24 H 1.48501 * 109.47516 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46907 * 299.99479 * 22 20 18 26 26 C 1.47576 * 91.01377 * 24.64202 * 17 16 15 27 27 C 1.46764 * 111.30359 * 359.59513 * 14 12 11 28 28 H 1.09002 * 109.46876 * 60.00353 * 1 2 3 29 29 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47508 * 299.99956 * 1 2 3 31 31 H 1.08993 * 109.47054 * 239.99763 * 2 1 3 32 32 H 1.09002 * 109.46876 * 119.99647 * 2 1 3 33 33 H 1.09007 * 109.47059 * 59.99610 * 3 2 1 34 34 H 1.08994 * 109.47214 * 299.99815 * 3 2 1 35 35 H 1.09004 * 109.47150 * 60.00218 * 5 4 3 36 36 H 1.08994 * 109.47490 * 299.99945 * 5 4 3 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09002 * 110.48765 * 261.60135 * 11 9 8 39 39 H 1.08999 * 110.48131 * 24.23880 * 11 9 8 40 40 H 1.09004 * 112.94818 * 168.38828 * 15 14 12 41 41 H 1.09001 * 113.76553 * 336.35113 * 16 15 14 42 42 H 1.09002 * 113.76390 * 107.74774 * 16 15 14 43 43 H 0.97002 * 120.00030 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.76745 * 221.05577 * 26 17 16 45 45 H 1.09003 * 113.77329 * 89.66475 * 26 17 16 46 46 H 1.08997 * 110.24337 * 258.01476 * 27 14 12 47 47 H 1.08996 * 110.24586 * 136.01735 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2101 -0.0001 6 6 5.7594 3.3799 0.0010 7 8 6.4804 2.4047 0.0019 8 7 6.2974 4.6156 -0.0050 9 6 7.7530 4.7808 -0.0099 10 1 8.2318 4.0220 0.6090 11 6 8.3086 4.7493 -1.4526 12 6 9.4261 5.7689 -1.4421 13 8 10.2954 5.8554 -2.2834 14 7 9.3159 6.5645 -0.3644 15 6 10.2411 7.6541 -0.0431 16 6 10.7575 8.4134 -1.2788 17 7 12.0766 8.3898 -0.6173 18 6 13.2018 9.1668 -0.6925 19 1 14.0626 8.9307 -0.0844 20 6 13.2360 10.2576 -1.5502 21 7 12.1872 10.5450 -2.2916 22 14 14.7711 11.3169 -1.6532 23 1 15.9200 10.4827 -2.0878 24 1 14.5533 12.4102 -2.6343 25 1 15.0601 11.9007 -0.3186 26 6 11.6961 7.1928 0.1574 27 6 8.1499 6.2013 0.4495 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.8427 3.6802 0.8895 36 1 3.8435 3.6792 -0.8905 37 1 5.7208 5.3957 -0.0059 38 1 8.6977 3.7592 -1.6901 39 1 7.5359 5.0375 -2.1653 40 1 9.8733 8.3037 0.7512 41 1 10.7175 7.8321 -2.2000 42 1 10.3379 9.4136 -1.3868 43 1 12.2113 11.3071 -2.8912 44 1 12.0259 7.2185 1.1959 45 1 11.9318 6.2530 -0.3419 46 1 7.3318 6.8985 0.2688 47 1 8.4149 6.1955 1.5067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108514028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = -5.480991 kcal Electronic energy + Delta-G solvation = -26686.062477 eV Core-core repulsion = 22804.356411 eV Total energy + Delta-G solvation = -3881.706067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78497 -39.62648 -37.27901 -36.43439 -35.18112 -34.22353 -32.27096 -31.17041 -29.63446 -27.79889 -27.56588 -26.92232 -24.72570 -23.45084 -22.50032 -21.90693 -21.05280 -20.37912 -18.35434 -17.69386 -17.20484 -16.76980 -16.38897 -16.28084 -16.12451 -15.67869 -15.47237 -14.71853 -14.61219 -14.36241 -14.04240 -13.97323 -13.85940 -13.74144 -13.53095 -13.45095 -13.20250 -12.83695 -12.42959 -12.11677 -11.96773 -11.85134 -11.68365 -11.59882 -11.39784 -11.35494 -11.18330 -10.83047 -10.71599 -10.41257 -10.34172 -10.16910 -10.00754 -9.74427 -9.48750 -9.19049 -8.64939 -8.20312 -8.05356 -6.80852 -5.71666 -3.03641 0.97884 2.09056 2.16732 2.63774 2.91249 3.27615 3.43286 3.47639 3.48964 4.09706 4.26087 4.31805 4.33637 4.42856 4.51140 4.52126 4.67560 4.74016 4.77800 4.85843 4.88296 5.06442 5.17104 5.23399 5.32911 5.34327 5.48279 5.53831 5.54658 5.61341 5.64595 5.69483 5.70146 5.84562 6.04275 6.29389 6.51801 6.57693 6.86484 6.98342 7.29338 7.47551 7.58929 7.64405 7.75022 8.02077 8.53986 9.09228 9.75290 10.64392 11.45514 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.049256 B = 0.001630 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.325151 B =17177.305645 C =17216.190588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.106 4.106 4 S -0.183 6.183 5 C -0.130 4.130 6 C 0.533 3.467 7 O -0.511 6.511 8 N -0.717 5.717 9 C 0.137 3.863 10 H 0.112 0.888 11 C -0.167 4.167 12 C 0.515 3.485 13 O -0.506 6.506 14 N -0.606 5.606 15 C 0.098 3.902 16 C 0.151 3.849 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.111 3.889 27 C 0.100 3.900 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.404 0.596 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.254 0.746 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.041 -16.016 8.025 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.255 4.255 4 S 0.043 5.957 5 C -0.281 4.281 6 C 0.317 3.683 7 O -0.385 6.385 8 N -0.370 5.370 9 C 0.031 3.969 10 H 0.130 0.870 11 C -0.209 4.209 12 C 0.301 3.699 13 O -0.380 6.380 14 N -0.342 5.342 15 C -0.005 4.005 16 C 0.026 3.974 17 N -0.330 5.330 18 C -0.349 4.349 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.016 4.016 27 C -0.025 4.025 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.239 0.761 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.069 -17.177 7.470 31.293 hybrid contribution -0.401 2.169 -0.123 2.209 sum -25.470 -15.008 7.347 30.462 Atomic orbital electron populations 1.21765 0.94602 1.02248 1.02047 1.21230 0.96062 0.93812 1.03573 1.23591 0.95113 1.01854 1.04935 1.87641 1.04598 1.05382 1.98057 1.23478 0.97356 0.99963 1.07287 1.19644 0.88911 0.83386 0.76391 1.90795 1.61898 1.38307 1.47486 1.45818 1.07119 1.07980 1.76107 1.21828 0.80149 0.98037 0.96888 0.87015 1.22833 0.98871 1.01311 0.97847 1.20592 0.85802 0.82147 0.81334 1.90791 1.36755 1.70817 1.39625 1.48501 1.27209 1.33719 1.24724 1.24106 0.87199 0.87226 1.01934 1.22791 0.83973 0.97929 0.92743 1.45647 1.13497 1.27118 1.46779 1.18946 0.91232 1.04611 1.20118 0.90231 1.24790 0.97934 0.98974 0.98679 1.69818 1.28699 1.29587 1.28564 0.86179 0.82306 0.79835 0.77303 1.21155 1.21555 1.21090 1.22935 0.90967 0.92060 0.95675 1.22180 0.89639 0.93882 0.96804 0.92495 0.92045 0.92511 0.90868 0.90895 0.90084 0.90055 0.87057 0.87023 0.76055 0.87720 0.87830 0.87639 0.92328 0.91189 0.93621 0.93900 0.94304 0.90883 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.16 0.37 -0.15 16 2 C -0.11 -0.52 5.94 -26.73 -0.16 -0.68 16 3 C -0.11 -0.53 5.94 37.16 0.22 -0.31 16 4 S -0.18 -1.53 20.87 -107.50 -2.24 -3.77 16 5 C -0.13 -0.75 6.42 36.01 0.23 -0.51 16 6 C 0.53 4.66 7.85 -10.98 -0.09 4.58 16 7 O -0.51 -6.82 15.61 5.55 0.09 -6.74 16 8 N -0.72 -4.77 5.18 -52.22 -0.27 -5.04 16 9 C 0.14 1.26 3.43 -66.30 -0.23 1.03 16 10 H 0.11 1.15 7.73 -51.93 -0.40 0.74 16 11 C -0.17 -2.00 6.59 -26.74 -0.18 -2.18 16 12 C 0.52 8.73 7.44 -10.87 -0.08 8.65 16 13 O -0.51 -11.36 14.64 5.56 0.08 -11.28 16 14 N -0.61 -9.18 3.15 -166.63 -0.53 -9.70 16 15 C 0.10 1.85 4.82 -70.14 -0.34 1.51 16 16 C 0.15 3.78 6.88 -2.97 -0.02 3.76 16 17 N -0.60 -16.34 3.70 -178.07 -0.66 -17.00 16 18 C -0.22 -6.47 10.70 -15.06 -0.16 -6.63 16 19 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -28.18 11.38 55.49 0.63 -27.55 16 22 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.11 2.42 8.45 -2.98 -0.03 2.40 16 27 C 0.10 0.94 7.07 -3.12 -0.02 0.92 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.38 8.14 -51.92 -0.42 -0.05 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.40 1.41 8.37 -40.82 -0.34 1.06 16 38 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 40 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 41 H 0.06 1.62 5.58 -51.93 -0.29 1.33 16 42 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.91 7.41 -51.93 -0.38 0.52 16 46 H 0.07 0.53 7.77 -51.93 -0.40 0.13 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -38.12 396.43 -10.17 -48.30 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.65 Total: -2.98 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -0.57 Total: 12.08 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.82 Total: -59.29 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.24 Total: -3.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.12 -10.17 -48.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108514028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.816 kcal (2) G-P(sol) polarization free energy of solvation -38.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds