Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46908 * 2 1 4 4 S 1.81397 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.81396 * 102.99966 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46989 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72353 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 110.85718 * 322.67178 * 9 8 6 11 11 C 1.54632 * 110.96962 * 86.45510 * 9 8 6 12 12 C 1.51278 * 104.19463 * 142.91861 * 11 9 8 13 13 O 1.21282 * 124.93916 * 163.71371 * 12 11 9 14 14 N 1.34412 * 110.11694 * 343.74777 * 12 11 9 15 15 C 1.46503 * 124.34978 * 179.57404 * 14 12 11 16 16 C 1.53948 * 113.74317 * 36.64839 * 15 14 12 17 17 N 1.47586 * 86.11585 * 222.04956 * 16 15 14 18 18 C 1.36940 * 134.48731 * 204.63792 * 17 16 15 19 19 H 1.08000 * 119.99688 * 180.02562 * 18 17 16 20 20 C 1.38805 * 120.00168 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00276 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47392 * 59.99522 * 22 20 18 24 24 H 1.48501 * 109.47516 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46907 * 299.99479 * 22 20 18 26 26 C 1.47576 * 91.01377 * 24.64202 * 17 16 15 27 27 C 1.46764 * 111.30359 * 359.59513 * 14 12 11 28 28 H 1.09002 * 109.46876 * 60.00353 * 1 2 3 29 29 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47508 * 299.99956 * 1 2 3 31 31 H 1.08993 * 109.47054 * 239.99763 * 2 1 3 32 32 H 1.09002 * 109.46876 * 119.99647 * 2 1 3 33 33 H 1.09007 * 109.47059 * 59.99610 * 3 2 1 34 34 H 1.08994 * 109.47214 * 299.99815 * 3 2 1 35 35 H 1.09004 * 109.47150 * 60.00218 * 5 4 3 36 36 H 1.08994 * 109.47490 * 299.99945 * 5 4 3 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09002 * 110.48765 * 261.60135 * 11 9 8 39 39 H 1.08999 * 110.48131 * 24.23880 * 11 9 8 40 40 H 1.09004 * 112.94818 * 168.38828 * 15 14 12 41 41 H 1.09001 * 113.76553 * 336.35113 * 16 15 14 42 42 H 1.09002 * 113.76390 * 107.74774 * 16 15 14 43 43 H 0.97002 * 120.00030 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.76745 * 221.05577 * 26 17 16 45 45 H 1.09003 * 113.77329 * 89.66475 * 26 17 16 46 46 H 1.08997 * 110.24337 * 258.01476 * 27 14 12 47 47 H 1.08996 * 110.24586 * 136.01735 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2101 -0.0001 6 6 5.7594 3.3799 0.0010 7 8 6.4804 2.4047 0.0019 8 7 6.2974 4.6156 -0.0050 9 6 7.7530 4.7808 -0.0099 10 1 8.2318 4.0220 0.6090 11 6 8.3086 4.7493 -1.4526 12 6 9.4261 5.7689 -1.4421 13 8 10.2954 5.8554 -2.2834 14 7 9.3159 6.5645 -0.3644 15 6 10.2411 7.6541 -0.0431 16 6 10.7575 8.4134 -1.2788 17 7 12.0766 8.3898 -0.6173 18 6 13.2018 9.1668 -0.6925 19 1 14.0626 8.9307 -0.0844 20 6 13.2360 10.2576 -1.5502 21 7 12.1872 10.5450 -2.2916 22 14 14.7711 11.3169 -1.6532 23 1 15.9200 10.4827 -2.0878 24 1 14.5533 12.4102 -2.6343 25 1 15.0601 11.9007 -0.3186 26 6 11.6961 7.1928 0.1574 27 6 8.1499 6.2013 0.4495 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.8427 3.6802 0.8895 36 1 3.8435 3.6792 -0.8905 37 1 5.7208 5.3957 -0.0059 38 1 8.6977 3.7592 -1.6901 39 1 7.5359 5.0375 -2.1653 40 1 9.8733 8.3037 0.7512 41 1 10.7175 7.8321 -2.2000 42 1 10.3379 9.4136 -1.3868 43 1 12.2113 11.3071 -2.8912 44 1 12.0259 7.2185 1.1959 45 1 11.9318 6.2530 -0.3419 46 1 7.3318 6.8985 0.2688 47 1 8.4149 6.1955 1.5067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108514028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = -33.284929 kcal Electronic energy + Delta-G solvation = -26687.268146 eV Core-core repulsion = 22804.356411 eV Total energy + Delta-G solvation = -3882.911736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92286 -40.57653 -38.95842 -37.65962 -35.53416 -35.27955 -34.19140 -32.22258 -30.55120 -29.16315 -28.27497 -27.98229 -26.61583 -25.24738 -23.20018 -22.48211 -22.13883 -21.67097 -19.79985 -18.80993 -18.35185 -17.97358 -17.67643 -17.17834 -16.91277 -16.67724 -16.42245 -16.10610 -15.85771 -15.59039 -15.19719 -14.89519 -14.83160 -14.62506 -14.48346 -14.31063 -14.09800 -13.82354 -13.62068 -13.41744 -13.28857 -13.21395 -12.80822 -12.76663 -12.60102 -12.34053 -12.27848 -12.05226 -12.02197 -11.93992 -11.69226 -11.51640 -11.18833 -11.04193 -10.81177 -10.66961 -10.16138 -9.58844 -8.94478 -8.64376 -7.92968 -5.27703 0.50560 1.42880 1.47886 1.50727 1.53935 1.59024 1.65685 1.84522 2.17538 2.48493 3.24972 3.30345 3.46545 3.47056 3.69379 3.77553 3.92032 3.96185 4.00209 4.01478 4.15874 4.24373 4.33736 4.42654 4.51876 4.56251 4.59927 4.64400 4.72666 4.75238 4.81664 4.86798 4.87736 4.91275 5.18970 5.20274 5.22235 5.22535 5.36181 5.40912 5.47342 5.84160 5.89323 6.23507 6.45025 6.88119 7.17155 7.21057 7.56935 8.52443 9.24035 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.049256 B = 0.001630 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.325151 B =17177.305645 C =17216.190588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.085 4.085 4 S -0.269 6.269 5 C -0.110 4.110 6 C 0.530 3.470 7 O -0.562 6.562 8 N -0.696 5.696 9 C 0.152 3.848 10 H 0.104 0.896 11 C -0.154 4.154 12 C 0.503 3.497 13 O -0.573 6.573 14 N -0.605 5.605 15 C 0.137 3.863 16 C 0.146 3.854 17 N -0.634 5.634 18 C -0.241 4.241 19 H 0.085 0.915 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.985 3.015 23 H -0.282 1.282 24 H -0.292 1.292 25 H -0.268 1.268 26 C 0.110 3.890 27 C 0.101 3.899 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.425 0.575 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.024 0.976 42 H 0.043 0.957 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.109 0.891 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.604 -15.350 10.260 34.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.233 4.233 4 S -0.043 6.043 5 C -0.261 4.261 6 C 0.316 3.684 7 O -0.440 6.440 8 N -0.351 5.351 9 C 0.045 3.955 10 H 0.122 0.878 11 C -0.196 4.196 12 C 0.292 3.708 13 O -0.452 6.452 14 N -0.338 5.338 15 C 0.034 3.966 16 C 0.020 3.980 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.103 0.897 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.812 3.188 23 H -0.208 1.208 24 H -0.218 1.218 25 H -0.193 1.193 26 C -0.016 4.016 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.264 0.736 38 H 0.113 0.887 39 H 0.139 0.861 40 H 0.158 0.842 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.037 0.963 46 H 0.127 0.873 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -27.712 -16.516 9.771 33.708 hybrid contribution 0.348 1.869 -0.833 2.076 sum -27.364 -14.647 8.938 32.299 Atomic orbital electron populations 1.21737 0.93312 1.02588 1.02622 1.21244 0.97017 0.93872 1.02687 1.23562 0.91593 1.01963 1.06200 1.87993 1.08759 1.09224 1.98317 1.23438 0.94973 0.97572 1.10077 1.20177 0.90063 0.82996 0.75144 1.90792 1.63305 1.40085 1.49796 1.45572 1.06072 1.08389 1.75082 1.21537 0.81597 0.97914 0.94404 0.87759 1.22750 0.97377 0.98935 1.00520 1.21466 0.85913 0.82774 0.80673 1.90757 1.39674 1.72671 1.42133 1.48449 1.28103 1.32162 1.25094 1.23407 0.86959 0.87368 0.98906 1.22597 0.84398 0.96847 0.94153 1.46083 1.13663 1.28581 1.47748 1.19409 0.92385 1.05024 1.20094 0.89728 1.25715 1.01168 1.00525 0.98561 1.70032 1.30768 1.30027 1.29354 0.85074 0.78293 0.77716 0.77748 1.20841 1.21796 1.19319 1.23030 0.93073 0.89574 0.95960 1.22536 0.88179 0.94272 0.97150 0.91973 0.91917 0.91806 0.91943 0.91748 0.88562 0.88825 0.83862 0.84350 0.73585 0.88689 0.86147 0.84175 0.95805 0.93838 0.94205 0.91230 0.96259 0.87312 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.91 71.98 0.71 -0.04 16 2 C -0.11 -0.94 5.94 30.60 0.18 -0.76 16 3 C -0.09 -0.66 5.94 71.98 0.43 -0.24 16 4 S -0.27 -4.19 20.87 -56.49 -1.18 -5.37 16 5 C -0.11 -0.89 6.42 71.24 0.46 -0.43 16 6 C 0.53 7.86 7.85 87.66 0.69 8.55 16 7 O -0.56 -14.53 15.61 -3.04 -0.05 -14.58 16 8 N -0.70 -6.53 5.18 -437.53 -2.27 -8.79 16 9 C 0.15 2.35 3.43 46.05 0.16 2.51 16 10 H 0.10 1.90 7.73 -2.39 -0.02 1.88 16 11 C -0.15 -3.53 6.59 30.59 0.20 -3.32 16 12 C 0.50 17.15 7.44 87.90 0.65 17.80 16 13 O -0.57 -27.23 14.64 -3.04 -0.04 -27.27 16 14 N -0.60 -17.24 3.15 -799.71 -2.52 -19.76 16 15 C 0.14 5.02 4.82 46.75 0.23 5.25 16 16 C 0.15 7.54 6.88 86.48 0.60 8.14 16 17 N -0.63 -35.00 3.70 -717.30 -2.65 -37.65 16 18 C -0.24 -14.31 10.70 84.03 0.90 -13.41 16 19 H 0.08 4.77 7.83 -2.91 -0.02 4.74 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.95 -60.27 11.38 21.65 0.25 -60.02 16 22 Si 0.98 47.38 29.55 68.60 2.03 49.41 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 C 0.11 4.78 8.45 86.48 0.73 5.51 16 27 C 0.10 1.46 7.07 86.83 0.61 2.07 16 28 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.42 0.66 8.37 -92.71 -0.78 -0.11 16 38 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.12 2.35 8.08 -2.39 -0.02 2.33 16 40 H 0.14 4.24 8.14 -2.38 -0.02 4.22 16 41 H 0.02 1.41 5.58 -2.39 -0.01 1.40 16 42 H 0.04 2.43 7.15 -2.39 -0.02 2.41 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.02 0.93 7.41 -2.39 -0.02 0.91 16 46 H 0.11 0.93 7.77 -2.39 -0.02 0.91 16 47 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -90.95 396.43 0.77 -90.18 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.19 Total: 5.73 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 7.01 Total: 28.12 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -7.20 Total: -126.22 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.09 Total: -41.85 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -1.18 Total: -5.37 kcal Total: -90.95 0.77 -90.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108514028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.896 kcal (2) G-P(sol) polarization free energy of solvation -90.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds