Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47087 * 2 1 4 4 S 1.81397 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.81401 * 102.99785 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47002 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 H 1.08999 * 115.51737 * 9.41113 * 9 8 6 11 11 C 1.52999 * 117.44270 * 223.99674 * 9 8 6 12 12 H 1.08998 * 119.52840 * 4.08636 * 11 9 8 13 13 C 1.57641 * 116.14178 * 161.44013 * 11 9 8 14 14 N 1.48555 * 104.59987 * 87.42810 * 13 11 9 15 15 C 1.46900 * 111.00204 * 200.32478 * 14 13 11 16 16 C 1.50710 * 109.46893 * 305.41854 * 15 14 13 17 17 O 1.21292 * 120.00122 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99563 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99718 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99951 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99951 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00046 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47169 * 60.00400 * 23 21 19 25 25 H 1.48500 * 109.47267 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47076 * 300.00575 * 23 21 19 27 27 C 1.48558 * 104.22322 * 319.88569 * 14 13 11 28 28 C 1.53002 * 117.44570 * 154.83493 * 9 8 6 29 29 H 1.08998 * 119.52522 * 355.91050 * 28 9 8 30 30 H 1.09004 * 109.47426 * 299.99978 * 1 2 3 31 31 H 1.09000 * 109.47550 * 60.00271 * 1 2 3 32 32 H 1.09004 * 109.47087 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47570 * 239.99729 * 2 1 3 34 34 H 1.09000 * 109.47250 * 119.99271 * 2 1 3 35 35 H 1.09004 * 109.46969 * 59.99743 * 3 2 1 36 36 H 1.09000 * 109.46704 * 300.00247 * 3 2 1 37 37 H 1.09002 * 109.47085 * 299.99903 * 5 4 3 38 38 H 1.09001 * 109.47417 * 60.00029 * 5 4 3 39 39 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 40 40 H 1.09004 * 110.94771 * 328.37487 * 13 11 9 41 41 H 1.09001 * 109.97124 * 205.99048 * 13 11 9 42 42 H 1.08991 * 109.47080 * 65.41841 * 15 14 13 43 43 H 1.08997 * 109.47337 * 185.42230 * 15 14 13 44 44 H 0.96994 * 120.00331 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99908 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.40656 * 280.70045 * 27 14 13 47 47 H 1.09004 * 110.41090 * 158.26383 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8539 1.4426 0.0008 5 6 4.2619 3.2101 -0.0001 6 6 5.7593 3.3800 0.0010 7 8 6.4803 2.4048 0.0028 8 7 6.2974 4.6157 0.0012 9 6 7.7530 4.7809 0.0017 10 1 8.3290 3.8696 -0.1588 11 6 8.3431 5.8311 0.9451 12 1 7.6859 6.3701 1.6274 13 6 9.8794 5.6892 1.2684 14 7 10.5615 6.4380 0.1818 15 6 11.9631 6.0177 0.0521 16 6 12.6538 6.1543 1.3846 17 8 12.0388 6.5612 2.3476 18 7 13.9546 5.8232 1.5064 19 6 14.5831 5.9479 2.7184 20 1 14.0357 6.3111 3.5757 21 6 15.9240 5.6061 2.8441 22 7 16.5899 5.1638 1.8011 23 14 16.7802 5.7754 4.4957 24 1 16.0963 4.9191 5.4979 25 1 18.1969 5.3499 4.3648 26 1 16.7281 7.1923 4.9374 27 6 9.7877 6.0952 -1.0392 28 6 8.3154 6.0815 -0.5755 29 1 7.6374 6.8070 -1.0252 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.8433 3.6792 -0.8906 38 1 3.8426 3.6803 0.8894 39 1 5.7207 5.3958 0.0001 40 1 10.1847 4.6428 1.2587 41 1 10.0993 6.1395 2.2364 42 1 12.0021 4.9780 -0.2724 43 1 12.4646 6.6469 -0.6832 44 1 14.4463 5.4974 0.7364 45 1 17.5261 4.9255 1.8888 46 1 10.0787 5.1125 -1.4101 47 1 9.9369 6.8525 -1.8089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113950603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = -31.706305 kcal Electronic energy + Delta-G solvation = -26019.898321 eV Core-core repulsion = 22137.055039 eV Total energy + Delta-G solvation = -3882.843282 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44938 -39.29476 -37.92773 -35.22461 -35.11422 -33.91324 -32.80302 -31.25131 -30.28024 -28.11373 -27.79060 -27.38729 -24.67337 -22.74220 -22.10154 -21.10124 -20.79588 -20.25328 -19.15151 -17.84202 -17.52850 -17.23278 -16.44423 -16.15139 -15.83291 -15.61147 -15.15318 -14.96556 -14.52942 -14.34362 -14.25302 -13.97164 -13.73533 -13.59960 -13.43412 -13.41696 -12.96788 -12.89100 -12.34353 -12.12734 -11.95210 -11.85661 -11.66601 -11.53776 -11.33917 -11.31131 -11.19515 -10.98699 -10.86844 -10.43392 -10.31455 -10.31057 -10.22156 -10.06291 -9.48579 -8.98672 -8.41257 -8.04050 -8.02773 -7.92851 -6.41720 -3.82718 0.99819 2.11431 2.18179 2.67604 3.20547 3.26541 3.30755 3.60622 3.88573 4.04397 4.19560 4.27270 4.32082 4.35195 4.48220 4.57770 4.66949 4.68782 4.75572 4.80471 4.89539 4.97855 5.07592 5.17549 5.18621 5.25399 5.25889 5.49659 5.53300 5.56256 5.68961 5.71668 5.73048 5.77427 5.92008 6.03012 6.10099 6.25314 6.28495 6.61908 7.05941 7.12389 7.23889 7.55166 7.81718 8.05301 8.60876 9.17393 9.53110 10.04509 10.75792 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.001597 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.678358 B =17532.580152 C =18295.208497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.107 4.107 4 S -0.181 6.181 5 C -0.128 4.128 6 C 0.533 3.467 7 O -0.511 6.511 8 N -0.696 5.696 9 C 0.100 3.900 10 H 0.134 0.866 11 C -0.161 4.161 12 H 0.121 0.879 13 C 0.067 3.933 14 N -0.487 5.487 15 C 0.034 3.966 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.560 5.560 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.060 3.940 28 C -0.169 4.169 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.402 0.598 40 H 0.042 0.958 41 H 0.121 0.879 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.393 0.607 45 H 0.272 0.728 46 H 0.046 0.954 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.322 -3.965 -8.614 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.255 4.255 4 S 0.045 5.955 5 C -0.280 4.280 6 C 0.317 3.683 7 O -0.386 6.386 8 N -0.346 5.346 9 C -0.006 4.006 10 H 0.152 0.848 11 C -0.181 4.181 12 H 0.139 0.861 13 C -0.061 4.061 14 N -0.211 5.211 15 C -0.098 4.098 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.196 5.196 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.068 4.068 28 C -0.189 4.189 29 H 0.134 0.866 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.237 0.763 40 H 0.060 0.940 41 H 0.139 0.861 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -28.255 -4.756 -7.884 29.717 hybrid contribution -0.325 0.707 0.028 0.779 sum -28.580 -4.049 -7.856 29.915 Atomic orbital electron populations 1.21764 0.94601 1.02249 1.02017 1.21230 0.96050 0.93796 1.03614 1.23594 0.95172 1.01874 1.04889 1.87676 1.04500 1.05266 1.98046 1.23465 0.97270 1.00045 1.07185 1.19626 0.88879 0.83318 0.76431 1.90788 1.61893 1.38286 1.47591 1.45165 1.06511 1.07759 1.75164 1.21899 0.80425 0.95237 1.03073 0.84798 1.24805 0.98238 1.02292 0.92790 0.86101 1.23444 0.87320 0.96587 0.98711 1.65376 1.00618 1.52696 1.02433 1.22103 0.89823 0.99485 0.98382 1.19681 0.83294 0.84859 0.89497 1.90445 1.64836 1.51198 1.40160 1.41834 1.08378 1.57202 1.12199 1.19658 0.93231 1.41385 0.88753 0.87910 1.25265 0.96589 0.96897 0.99073 1.69607 1.10632 1.44131 1.29806 0.85913 0.77873 0.78905 0.81498 1.19898 1.20965 1.19875 1.22692 0.89984 1.00027 0.94111 1.23773 0.97845 0.99328 0.97979 0.86586 0.92507 0.92531 0.92027 0.90876 0.90838 0.90075 0.90113 0.87124 0.87067 0.76331 0.93992 0.86077 0.93138 0.88927 0.77414 0.91783 0.93582 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.11 -0.59 5.94 -26.73 -0.16 -0.75 16 3 C -0.11 -0.61 5.94 37.16 0.22 -0.39 16 4 S -0.18 -1.71 20.87 -107.50 -2.24 -3.95 16 5 C -0.13 -0.91 6.42 36.01 0.23 -0.68 16 6 C 0.53 5.75 7.85 -10.98 -0.09 5.67 16 7 O -0.51 -8.00 15.43 5.56 0.09 -7.91 16 8 N -0.70 -6.25 5.56 -53.81 -0.30 -6.55 16 9 C 0.10 1.16 5.93 -67.93 -0.40 0.76 16 10 H 0.13 1.88 7.40 -51.93 -0.38 1.50 16 11 C -0.16 -2.06 7.32 -87.49 -0.64 -2.70 16 12 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.07 1.14 5.18 -0.37 0.00 1.13 16 14 N -0.49 -8.19 5.34 -229.20 -1.22 -9.41 16 15 C 0.03 0.61 5.55 -4.97 -0.03 0.58 16 16 C 0.44 10.40 7.50 -10.98 -0.08 10.32 16 17 O -0.58 -15.38 13.24 5.55 0.07 -15.31 16 18 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.06 0.77 6.30 -2.19 -0.01 0.76 16 28 C -0.17 -1.88 6.97 -89.31 -0.62 -2.50 16 29 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.11 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.11 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 40 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 41 H 0.12 2.45 6.04 -51.93 -0.31 2.14 16 42 H 0.05 0.84 7.88 -51.93 -0.41 0.44 16 43 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.05 0.58 7.82 -51.93 -0.41 0.18 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -33.75 400.81 -11.00 -44.75 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.62 Total: 10.35 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.46 Total: 4.00 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.86 Total: -54.08 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.16 Total: -23.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.24 Total: -3.95 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.75 -11.00 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113950603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.044 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds