Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47087 * 2 1 4 4 S 1.81397 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.81401 * 102.99785 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47002 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 H 1.08999 * 115.51737 * 9.41113 * 9 8 6 11 11 C 1.52999 * 117.44270 * 223.99674 * 9 8 6 12 12 H 1.08998 * 119.52840 * 4.08636 * 11 9 8 13 13 C 1.57641 * 116.14178 * 161.44013 * 11 9 8 14 14 N 1.48555 * 104.59987 * 87.42810 * 13 11 9 15 15 C 1.46900 * 111.00204 * 200.32478 * 14 13 11 16 16 C 1.50710 * 109.46893 * 305.41854 * 15 14 13 17 17 O 1.21292 * 120.00122 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99563 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99718 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99951 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99951 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00046 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47169 * 60.00400 * 23 21 19 25 25 H 1.48500 * 109.47267 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47076 * 300.00575 * 23 21 19 27 27 C 1.48558 * 104.22322 * 319.88569 * 14 13 11 28 28 C 1.53002 * 117.44570 * 154.83493 * 9 8 6 29 29 H 1.08998 * 119.52522 * 355.91050 * 28 9 8 30 30 H 1.09004 * 109.47426 * 299.99978 * 1 2 3 31 31 H 1.09000 * 109.47550 * 60.00271 * 1 2 3 32 32 H 1.09004 * 109.47087 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47570 * 239.99729 * 2 1 3 34 34 H 1.09000 * 109.47250 * 119.99271 * 2 1 3 35 35 H 1.09004 * 109.46969 * 59.99743 * 3 2 1 36 36 H 1.09000 * 109.46704 * 300.00247 * 3 2 1 37 37 H 1.09002 * 109.47085 * 299.99903 * 5 4 3 38 38 H 1.09001 * 109.47417 * 60.00029 * 5 4 3 39 39 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 40 40 H 1.09004 * 110.94771 * 328.37487 * 13 11 9 41 41 H 1.09001 * 109.97124 * 205.99048 * 13 11 9 42 42 H 1.08991 * 109.47080 * 65.41841 * 15 14 13 43 43 H 1.08997 * 109.47337 * 185.42230 * 15 14 13 44 44 H 0.96994 * 120.00331 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99908 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.40656 * 280.70045 * 27 14 13 47 47 H 1.09004 * 110.41090 * 158.26383 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8539 1.4426 0.0008 5 6 4.2619 3.2101 -0.0001 6 6 5.7593 3.3800 0.0010 7 8 6.4803 2.4048 0.0028 8 7 6.2974 4.6157 0.0012 9 6 7.7530 4.7809 0.0017 10 1 8.3290 3.8696 -0.1588 11 6 8.3431 5.8311 0.9451 12 1 7.6859 6.3701 1.6274 13 6 9.8794 5.6892 1.2684 14 7 10.5615 6.4380 0.1818 15 6 11.9631 6.0177 0.0521 16 6 12.6538 6.1543 1.3846 17 8 12.0388 6.5612 2.3476 18 7 13.9546 5.8232 1.5064 19 6 14.5831 5.9479 2.7184 20 1 14.0357 6.3111 3.5757 21 6 15.9240 5.6061 2.8441 22 7 16.5899 5.1638 1.8011 23 14 16.7802 5.7754 4.4957 24 1 16.0963 4.9191 5.4979 25 1 18.1969 5.3499 4.3648 26 1 16.7281 7.1923 4.9374 27 6 9.7877 6.0952 -1.0392 28 6 8.3154 6.0815 -0.5755 29 1 7.6374 6.8070 -1.0252 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.8433 3.6792 -0.8906 38 1 3.8426 3.6803 0.8894 39 1 5.7207 5.3958 0.0001 40 1 10.1847 4.6428 1.2587 41 1 10.0993 6.1395 2.2364 42 1 12.0021 4.9780 -0.2724 43 1 12.4646 6.6469 -0.6832 44 1 14.4463 5.4974 0.7364 45 1 17.5261 4.9255 1.8888 46 1 10.0787 5.1125 -1.4101 47 1 9.9369 6.8525 -1.8089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113950603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = -56.857548 kcal Electronic energy + Delta-G solvation = -26020.988961 eV Core-core repulsion = 22137.055039 eV Total energy + Delta-G solvation = -3883.933921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49366 -40.50533 -39.55920 -36.45027 -35.78588 -35.55243 -33.90606 -33.27408 -31.00850 -29.27870 -28.92464 -28.12589 -26.52501 -23.89343 -22.66684 -22.08672 -21.74945 -21.31672 -20.95586 -19.85703 -18.34373 -18.11732 -17.65641 -17.15783 -16.75356 -16.64110 -16.35839 -16.29468 -16.13971 -15.63557 -15.27915 -14.95820 -14.87062 -14.72607 -14.36490 -14.25514 -14.04419 -13.80409 -13.52312 -13.32550 -13.24646 -13.16155 -12.94369 -12.54644 -12.45107 -12.37880 -12.36085 -12.12213 -12.08795 -11.97366 -11.72284 -11.49006 -11.24639 -11.08767 -10.87106 -10.23610 -10.03344 -9.86403 -9.42483 -8.71551 -8.47932 -5.96917 0.42383 1.37083 1.38625 1.40639 1.51696 1.59416 1.87581 2.01531 2.27517 2.62780 2.85389 3.18726 3.28904 3.50183 3.64924 3.67978 3.78108 3.90225 3.96540 4.04612 4.07086 4.21113 4.23925 4.26937 4.39530 4.41268 4.49671 4.50964 4.56760 4.62558 4.68369 4.77596 4.84471 4.96286 5.10303 5.16244 5.19670 5.21077 5.37363 5.38395 5.39540 5.77962 5.85614 6.05493 6.35626 6.58300 7.08208 7.10717 7.52948 8.08527 8.69241 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.001597 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.678358 B =17532.580152 C =18295.208497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.084 4.084 4 S -0.271 6.271 5 C -0.106 4.106 6 C 0.527 3.473 7 O -0.568 6.568 8 N -0.677 5.677 9 C 0.105 3.895 10 H 0.105 0.895 11 C -0.168 4.168 12 H 0.138 0.862 13 C 0.065 3.935 14 N -0.500 5.500 15 C 0.045 3.955 16 C 0.437 3.563 17 O -0.614 6.614 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.055 3.945 28 C -0.142 4.142 29 H 0.153 0.847 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.424 0.576 40 H 0.021 0.979 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.116 0.884 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.048 0.952 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.682 -2.590 -9.863 33.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.232 4.232 4 S -0.045 6.045 5 C -0.257 4.257 6 C 0.314 3.686 7 O -0.446 6.446 8 N -0.329 5.329 9 C -0.003 4.003 10 H 0.123 0.877 11 C -0.188 4.188 12 H 0.155 0.845 13 C -0.063 4.063 14 N -0.225 5.225 15 C -0.087 4.087 16 C 0.225 3.775 17 O -0.500 6.500 18 N -0.208 5.208 19 C -0.465 4.465 20 H 0.098 0.902 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.072 4.072 28 C -0.162 4.162 29 H 0.170 0.830 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.262 0.738 40 H 0.039 0.961 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -30.649 -3.347 -9.162 32.164 hybrid contribution 0.354 0.265 0.402 0.598 sum -30.295 -3.082 -8.760 31.686 Atomic orbital electron populations 1.21733 0.93099 1.02659 1.02680 1.21251 0.97160 0.93757 1.02692 1.23581 0.91182 1.02109 1.06309 1.88046 1.09173 1.08920 1.98323 1.23404 0.94252 0.97889 1.10131 1.20316 0.90364 0.82822 0.75088 1.90777 1.63518 1.40183 1.50165 1.44968 1.05462 1.08288 1.74139 1.21564 0.81822 0.94279 1.02606 0.87689 1.24614 0.95626 1.04036 0.94536 0.84463 1.23200 0.90879 0.94809 0.97416 1.65377 1.00120 1.52829 1.04145 1.21997 0.90598 1.00980 0.95099 1.20695 0.82667 0.82900 0.91259 1.90439 1.65430 1.52083 1.42093 1.41906 1.09169 1.58056 1.11678 1.19644 0.94166 1.43346 0.89322 0.90198 1.26046 0.96589 0.95961 1.02562 1.69671 1.11050 1.44045 1.31291 0.84985 0.77218 0.78854 0.77253 1.19834 1.19432 1.19557 1.22849 0.90507 1.00989 0.92838 1.23872 0.97296 0.99058 0.95926 0.82951 0.91898 0.91737 0.91840 0.91768 0.91967 0.88688 0.88429 0.83743 0.84199 0.73790 0.96113 0.90065 0.91709 0.86566 0.77028 0.91267 0.93363 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.91 71.98 0.71 -0.15 16 2 C -0.11 -1.09 5.94 30.60 0.18 -0.91 16 3 C -0.08 -0.78 5.94 71.98 0.43 -0.36 16 4 S -0.27 -4.96 20.87 -56.49 -1.18 -6.14 16 5 C -0.11 -1.22 6.42 71.24 0.46 -0.76 16 6 C 0.53 10.66 7.85 87.66 0.69 11.35 16 7 O -0.57 -18.17 15.43 -3.02 -0.05 -18.21 16 8 N -0.68 -10.45 5.56 -442.54 -2.46 -12.91 16 9 C 0.10 2.30 5.93 44.99 0.27 2.56 16 10 H 0.11 3.02 7.40 -2.39 -0.02 3.00 16 11 C -0.17 -4.11 7.32 -8.77 -0.06 -4.18 16 12 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 13 C 0.06 2.28 5.18 87.63 0.45 2.74 16 14 N -0.50 -16.53 5.34 -879.06 -4.69 -21.23 16 15 C 0.04 1.61 5.55 85.56 0.47 2.08 16 16 C 0.44 21.30 7.50 87.66 0.66 21.96 16 17 O -0.61 -34.02 13.24 -3.07 -0.04 -34.06 16 18 N -0.57 -29.96 5.29 -306.98 -1.62 -31.58 16 19 C -0.34 -19.34 9.68 84.04 0.81 -18.53 16 20 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 22 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 23 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C 0.06 1.29 6.30 86.45 0.54 1.84 16 28 C -0.14 -2.71 6.97 -9.94 -0.07 -2.78 16 29 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.42 2.95 8.83 -92.70 -0.82 2.14 16 40 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 41 H 0.08 3.50 6.04 -2.39 -0.01 3.49 16 42 H 0.07 2.15 7.88 -2.39 -0.02 2.14 16 43 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 45 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 46 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 47 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -78.57 400.81 -2.28 -80.86 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.56 Total: 33.10 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.01 Total: 14.69 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -8.49 Total: -115.81 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.09 Total: -52.28 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -1.18 Total: -6.14 kcal Total: -78.57 -2.28 -80.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113950603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.998 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds