Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87480 * 2 1 4 4 C 1.54325 * 109.88119 * 121.01527 * 2 1 3 5 5 H 1.09000 * 110.72188 * 215.73439 * 4 2 1 6 6 N 1.46893 * 110.72159 * 339.01655 * 4 2 1 7 7 C 1.46905 * 110.99944 * 204.99506 * 6 4 2 8 8 C 1.50699 * 109.47312 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99952 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00351 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00239 * 180.02562 * 10 8 7 12 12 C 1.53000 * 117.50282 * 223.74666 * 11 10 8 13 13 C 1.53007 * 117.50140 * 155.08653 * 11 10 8 14 14 C 1.55163 * 102.94109 * 97.37852 * 4 2 1 15 15 C 1.54910 * 101.58002 * 35.49973 * 14 4 2 16 16 N 1.47018 * 109.88094 * 238.98427 * 2 1 3 17 17 C 1.34778 * 125.64867 * 59.32438 * 16 2 1 18 18 O 1.21283 * 120.00001 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99986 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.47206 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00294 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00011 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00080 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99751 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00048 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46835 * 90.00804 * 25 23 21 27 27 H 1.48503 * 109.46987 * 210.00236 * 25 23 21 28 28 H 1.48497 * 109.47152 * 330.00624 * 25 23 21 29 29 H 1.09005 * 109.46795 * 299.30113 * 1 2 3 30 30 H 1.09000 * 109.47189 * 59.29385 * 1 2 3 31 31 H 1.08995 * 109.47480 * 179.29901 * 1 2 3 32 32 H 1.00901 * 111.00227 * 81.04528 * 6 4 2 33 33 H 1.08997 * 109.47349 * 300.00116 * 7 6 4 34 34 H 1.09004 * 109.46468 * 60.00110 * 7 6 4 35 35 H 0.96998 * 119.99656 * 0.02562 * 10 8 7 36 36 H 1.08997 * 115.55294 * 9.41705 * 11 10 8 37 37 H 1.09005 * 117.49411 * 0.02562 * 12 11 10 38 38 H 1.09000 * 117.50373 * 145.01585 * 12 11 10 39 39 H 1.08992 * 117.50119 * 214.98108 * 13 11 10 40 40 H 1.08996 * 117.49381 * 359.97438 * 13 11 10 41 41 H 1.08999 * 111.00579 * 153.57534 * 14 4 2 42 42 H 1.09000 * 111.00160 * 277.39203 * 14 4 2 43 43 H 1.09001 * 110.36566 * 81.83216 * 15 14 4 44 44 H 1.09004 * 110.36988 * 204.15295 * 15 14 4 45 45 H 1.08999 * 109.47418 * 300.00317 * 19 17 16 46 46 H 1.09004 * 109.47129 * 59.99941 * 19 17 16 47 47 H 0.97002 * 119.99554 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9642 -0.2794 1.6202 6 7 1.0252 -0.8028 2.2901 7 6 1.6329 -0.9488 3.6195 8 6 0.5485 -1.0008 4.6646 9 8 -0.6161 -0.9243 4.3345 10 7 0.8726 -1.1324 5.9662 11 6 -0.1816 -1.1835 6.9820 12 6 0.0263 -0.3651 8.2579 13 6 0.1408 -1.8910 8.2999 14 6 2.3556 -2.1674 0.6945 15 6 2.8617 -1.8473 -0.7342 16 7 2.0299 -0.7124 -1.1849 17 6 1.7716 -0.3836 -2.4662 18 8 1.0718 0.5746 -2.7171 19 6 2.3523 -1.2068 -3.5871 20 16 1.8281 -0.5171 -5.1763 21 6 2.6257 -1.6400 -6.2752 22 1 3.2202 -2.4509 -5.8810 23 6 2.4908 -1.4818 -7.6475 24 7 3.0863 -2.3209 -8.4684 25 14 1.4631 -0.0788 -8.3294 26 1 2.3241 1.1150 -8.5269 27 1 0.8732 -0.4843 -9.6305 28 1 0.3752 0.2482 -7.3730 29 1 -0.3633 0.5030 0.8962 30 1 -0.3633 0.5248 -0.8836 31 1 -0.3634 -1.0275 -0.0126 32 1 0.3662 -1.5454 2.1103 33 1 2.2154 -1.8694 3.6537 34 1 2.2858 -0.0982 3.8159 35 1 1.8040 -1.1931 6.2302 36 1 -1.1988 -1.2703 6.6001 37 1 0.9475 0.2117 8.3412 38 1 -0.8540 0.0863 8.7155 39 1 -0.6643 -2.4428 8.7849 40 1 1.1372 -2.3187 8.4107 41 1 3.1310 -2.6579 1.2829 42 1 1.4504 -2.7737 0.6622 43 1 3.9134 -1.5620 -0.7090 44 1 2.7164 -2.7061 -1.3895 45 1 3.4404 -1.1891 -3.5249 46 1 2.0003 -2.2350 -3.5029 47 1 2.9917 -2.2105 -9.4274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -32.168343 kcal Electronic energy + Delta-G solvation = -26679.758732 eV Core-core repulsion = 22796.895415 eV Total energy + Delta-G solvation = -3882.863317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.50190 -39.99244 -37.98641 -37.42682 -34.96535 -33.35814 -32.42563 -31.59838 -30.94154 -28.80683 -26.88060 -25.59848 -25.10107 -23.05540 -22.98156 -22.42037 -21.11115 -20.75531 -18.95533 -17.95835 -17.55588 -17.20961 -16.65080 -16.30045 -16.13344 -15.43193 -15.23078 -14.98613 -14.88501 -14.64324 -14.13253 -13.98679 -13.67826 -13.40863 -13.27435 -13.18615 -12.87362 -12.79532 -12.61454 -12.45521 -12.26461 -12.17422 -11.90929 -11.83627 -11.47751 -11.24943 -11.10428 -11.01817 -10.99037 -10.90322 -10.57830 -10.26953 -9.83573 -9.38488 -9.30667 -8.98748 -8.81232 -8.53805 -8.47064 -6.89807 -6.27640 -3.99040 2.12660 2.40904 2.72056 3.01091 3.20202 3.33828 3.34946 3.52875 3.60389 3.75758 4.16420 4.19649 4.26377 4.29593 4.35211 4.35986 4.41103 4.63842 4.69754 4.79413 4.85492 4.95640 5.03678 5.08679 5.11653 5.21434 5.22888 5.35111 5.36215 5.47848 5.47944 5.52883 5.53891 5.69842 5.81995 5.94560 5.97495 6.03434 6.13586 6.42032 6.50158 6.60333 6.86781 6.99517 7.64481 7.75548 7.95412 8.42507 8.51333 9.18789 10.81558 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040679 B = 0.001722 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.158229 B =16259.166008 C =16640.336938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.076 0.924 4 C 0.083 3.917 5 H 0.095 0.905 6 N -0.658 5.658 7 C 0.041 3.959 8 C 0.516 3.484 9 O -0.519 6.519 10 N -0.707 5.707 11 C 0.080 3.920 12 C -0.194 4.194 13 C -0.190 4.190 14 C -0.164 4.164 15 C 0.103 3.897 16 N -0.623 5.623 17 C 0.549 3.451 18 O -0.513 6.513 19 C -0.118 4.118 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.087 0.913 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.357 0.643 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -0.839 35.149 35.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.094 0.906 4 C -0.028 4.028 5 H 0.113 0.887 6 N -0.291 5.291 7 C -0.091 4.091 8 C 0.302 3.698 9 O -0.392 6.392 10 N -0.359 5.359 11 C -0.026 4.026 12 C -0.232 4.232 13 C -0.228 4.228 14 C -0.204 4.204 15 C -0.021 4.021 16 N -0.361 5.361 17 C 0.337 3.663 18 O -0.388 6.388 19 C -0.268 4.268 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.179 0.821 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.235 0.765 36 H 0.156 0.844 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.586 1.295 34.263 34.324 hybrid contribution 1.479 -1.755 0.001 2.296 sum -0.106 -0.461 34.264 34.268 Atomic orbital electron populations 1.21947 0.93911 1.01960 1.03261 1.21360 0.95769 0.95575 0.82986 0.90623 1.22631 0.94053 0.94923 0.91199 0.88653 1.60121 1.16060 1.53825 0.99058 1.21830 0.95174 1.02759 0.89335 1.20645 0.90698 0.75674 0.82808 1.90747 1.20149 1.47510 1.80827 1.45373 1.09319 1.75270 1.05900 1.21597 0.93806 1.04148 0.83013 1.23443 1.04139 0.93978 1.01659 1.23394 1.03676 0.95325 1.00439 1.23526 1.02454 0.97826 0.96574 1.22262 0.95012 0.89971 0.94848 1.48634 1.51686 1.30890 1.04901 1.19918 0.80198 0.84754 0.81439 1.90696 1.37243 1.28231 1.82588 1.23261 1.03985 1.02416 0.97162 1.84798 1.68312 1.42786 0.95611 1.22313 1.36004 1.15693 0.92854 0.89450 1.24703 0.94708 0.96043 0.95794 1.69940 1.42098 1.36212 1.03491 0.86738 0.82437 0.82553 0.80158 1.19205 1.19944 1.15886 0.90306 0.91485 0.93394 0.82142 0.91948 0.87748 0.76454 0.84429 0.88452 0.87917 0.87818 0.88455 0.89919 0.90194 0.91079 0.90139 0.88712 0.88694 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.26 37.16 0.31 -1.72 16 2 C 0.15 1.77 3.47 -66.95 -0.23 1.54 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.08 0.65 3.15 -65.88 -0.21 0.44 16 5 H 0.10 0.61 7.83 -51.93 -0.41 0.20 16 6 N -0.66 -5.18 4.40 -106.05 -0.47 -5.64 16 7 C 0.04 0.22 6.03 -4.97 -0.03 0.19 16 8 C 0.52 3.92 7.87 -10.99 -0.09 3.83 16 9 O -0.52 -6.30 15.77 5.55 0.09 -6.21 16 10 N -0.71 -3.51 5.57 -53.81 -0.30 -3.81 16 11 C 0.08 0.44 6.43 -67.93 -0.44 0.01 16 12 C -0.19 -0.77 10.46 -26.69 -0.28 -1.05 16 13 C -0.19 -0.67 10.46 -26.69 -0.28 -0.95 16 14 C -0.16 -1.16 6.67 -24.58 -0.16 -1.32 16 15 C 0.10 1.01 6.71 -2.35 -0.02 1.00 16 16 N -0.62 -8.63 3.09 -162.76 -0.50 -9.13 16 17 C 0.55 10.25 7.65 -10.98 -0.08 10.16 16 18 O -0.51 -11.46 14.75 5.55 0.08 -11.38 16 19 C -0.12 -2.35 5.18 36.01 0.19 -2.16 16 20 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 21 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 22 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 23 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 24 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 25 Si 0.86 22.02 27.74 -169.99 -4.71 17.30 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 28 H -0.23 -6.05 6.74 56.52 0.38 -5.67 16 29 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 30 H 0.07 1.10 6.74 -51.93 -0.35 0.75 16 31 H 0.05 0.62 7.96 -51.93 -0.41 0.20 16 32 H 0.36 3.12 7.44 -39.29 -0.29 2.83 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.40 0.81 8.83 -40.82 -0.36 0.45 16 36 H 0.14 1.01 7.40 -51.93 -0.38 0.63 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.60 7.77 -51.93 -0.40 0.20 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.81 7.50 -51.93 -0.39 0.42 16 45 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 46 H 0.09 1.78 7.86 -51.91 -0.41 1.37 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -36.68 397.10 -9.75 -46.43 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.59 Total: 0.15 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.11 Total: -2.13 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.49 Total: -44.50 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.17 Total: -17.59 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.68 -9.75 -46.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.263 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds