Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87480 * 2 1 4 4 C 1.54325 * 109.88119 * 121.01527 * 2 1 3 5 5 H 1.09000 * 110.72188 * 215.73439 * 4 2 1 6 6 N 1.46893 * 110.72159 * 339.01655 * 4 2 1 7 7 C 1.46905 * 110.99944 * 204.99506 * 6 4 2 8 8 C 1.50699 * 109.47312 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99952 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00351 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00239 * 180.02562 * 10 8 7 12 12 C 1.53000 * 117.50282 * 223.74666 * 11 10 8 13 13 C 1.53007 * 117.50140 * 155.08653 * 11 10 8 14 14 C 1.55163 * 102.94109 * 97.37852 * 4 2 1 15 15 C 1.54910 * 101.58002 * 35.49973 * 14 4 2 16 16 N 1.47018 * 109.88094 * 238.98427 * 2 1 3 17 17 C 1.34778 * 125.64867 * 59.32438 * 16 2 1 18 18 O 1.21283 * 120.00001 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99986 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.47206 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00294 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00011 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00080 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99751 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00048 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46835 * 90.00804 * 25 23 21 27 27 H 1.48503 * 109.46987 * 210.00236 * 25 23 21 28 28 H 1.48497 * 109.47152 * 330.00624 * 25 23 21 29 29 H 1.09005 * 109.46795 * 299.30113 * 1 2 3 30 30 H 1.09000 * 109.47189 * 59.29385 * 1 2 3 31 31 H 1.08995 * 109.47480 * 179.29901 * 1 2 3 32 32 H 1.00901 * 111.00227 * 81.04528 * 6 4 2 33 33 H 1.08997 * 109.47349 * 300.00116 * 7 6 4 34 34 H 1.09004 * 109.46468 * 60.00110 * 7 6 4 35 35 H 0.96998 * 119.99656 * 0.02562 * 10 8 7 36 36 H 1.08997 * 115.55294 * 9.41705 * 11 10 8 37 37 H 1.09005 * 117.49411 * 0.02562 * 12 11 10 38 38 H 1.09000 * 117.50373 * 145.01585 * 12 11 10 39 39 H 1.08992 * 117.50119 * 214.98108 * 13 11 10 40 40 H 1.08996 * 117.49381 * 359.97438 * 13 11 10 41 41 H 1.08999 * 111.00579 * 153.57534 * 14 4 2 42 42 H 1.09000 * 111.00160 * 277.39203 * 14 4 2 43 43 H 1.09001 * 110.36566 * 81.83216 * 15 14 4 44 44 H 1.09004 * 110.36988 * 204.15295 * 15 14 4 45 45 H 1.08999 * 109.47418 * 300.00317 * 19 17 16 46 46 H 1.09004 * 109.47129 * 59.99941 * 19 17 16 47 47 H 0.97002 * 119.99554 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9642 -0.2794 1.6202 6 7 1.0252 -0.8028 2.2901 7 6 1.6329 -0.9488 3.6195 8 6 0.5485 -1.0008 4.6646 9 8 -0.6161 -0.9243 4.3345 10 7 0.8726 -1.1324 5.9662 11 6 -0.1816 -1.1835 6.9820 12 6 0.0263 -0.3651 8.2579 13 6 0.1408 -1.8910 8.2999 14 6 2.3556 -2.1674 0.6945 15 6 2.8617 -1.8473 -0.7342 16 7 2.0299 -0.7124 -1.1849 17 6 1.7716 -0.3836 -2.4662 18 8 1.0718 0.5746 -2.7171 19 6 2.3523 -1.2068 -3.5871 20 16 1.8281 -0.5171 -5.1763 21 6 2.6257 -1.6400 -6.2752 22 1 3.2202 -2.4509 -5.8810 23 6 2.4908 -1.4818 -7.6475 24 7 3.0863 -2.3209 -8.4684 25 14 1.4631 -0.0788 -8.3294 26 1 2.3241 1.1150 -8.5269 27 1 0.8732 -0.4843 -9.6305 28 1 0.3752 0.2482 -7.3730 29 1 -0.3633 0.5030 0.8962 30 1 -0.3633 0.5248 -0.8836 31 1 -0.3634 -1.0275 -0.0126 32 1 0.3662 -1.5454 2.1103 33 1 2.2154 -1.8694 3.6537 34 1 2.2858 -0.0982 3.8159 35 1 1.8040 -1.1931 6.2302 36 1 -1.1988 -1.2703 6.6001 37 1 0.9475 0.2117 8.3412 38 1 -0.8540 0.0863 8.7155 39 1 -0.6643 -2.4428 8.7849 40 1 1.1372 -2.3187 8.4107 41 1 3.1310 -2.6579 1.2829 42 1 1.4504 -2.7737 0.6622 43 1 3.9134 -1.5620 -0.7090 44 1 2.7164 -2.7061 -1.3895 45 1 3.4404 -1.1891 -3.5249 46 1 2.0003 -2.2350 -3.5029 47 1 2.9917 -2.2105 -9.4274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178147344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -59.549988 kcal Electronic energy + Delta-G solvation = -26680.946089 eV Core-core repulsion = 22796.895415 eV Total energy + Delta-G solvation = -3884.050674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39098 -40.72770 -39.01880 -37.99343 -35.79378 -34.68213 -33.86033 -32.67235 -31.84781 -30.10902 -27.88157 -27.57511 -25.89968 -24.00258 -23.26297 -22.82885 -21.64568 -21.59651 -20.27630 -19.55962 -18.42420 -17.97965 -17.67644 -17.17986 -17.11153 -16.73341 -16.48089 -16.11098 -15.80007 -15.53973 -15.43583 -14.94096 -14.77108 -14.51749 -14.39307 -14.16898 -13.76617 -13.62111 -13.58257 -13.45495 -13.32436 -13.10503 -13.02893 -12.86110 -12.65805 -12.48623 -12.44770 -12.29882 -11.88745 -11.83976 -11.68835 -11.45986 -11.17950 -10.94723 -10.81635 -10.54229 -9.73190 -9.70459 -9.33051 -9.01526 -8.52557 -6.23564 0.95627 1.30250 1.44685 1.52355 1.55363 1.61769 1.94552 2.13536 2.24453 2.67949 2.85753 3.00374 3.14908 3.45259 3.58118 3.76639 3.84465 3.88641 4.05179 4.07549 4.08820 4.17164 4.20545 4.36133 4.39109 4.42681 4.50186 4.53938 4.67349 4.71183 4.77898 4.80943 4.85567 5.01434 5.03977 5.08952 5.11221 5.21556 5.38777 5.48880 5.54546 5.69885 5.94939 6.09971 6.27697 6.40854 6.60101 6.92823 7.11296 7.30722 8.59745 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040679 B = 0.001722 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.158229 B =16259.166008 C =16640.336938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.139 3.861 3 H 0.065 0.935 4 C 0.100 3.900 5 H 0.124 0.876 6 N -0.676 5.676 7 C 0.048 3.952 8 C 0.510 3.490 9 O -0.576 6.576 10 N -0.692 5.692 11 C 0.054 3.946 12 C -0.188 4.188 13 C -0.173 4.173 14 C -0.150 4.150 15 C 0.090 3.910 16 N -0.613 5.613 17 C 0.546 3.454 18 O -0.561 6.561 19 C -0.101 4.101 20 S -0.177 6.177 21 C -0.528 4.528 22 H 0.063 0.937 23 C 0.049 3.951 24 N -0.915 5.915 25 Si 0.912 3.088 26 H -0.262 1.262 27 H -0.258 1.258 28 H -0.240 1.240 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.048 0.952 32 H 0.351 0.649 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 -1.308 38.065 38.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 H 0.083 0.917 4 C -0.010 4.010 5 H 0.141 0.859 6 N -0.308 5.308 7 C -0.084 4.084 8 C 0.298 3.702 9 O -0.454 6.454 10 N -0.343 5.343 11 C -0.053 4.053 12 C -0.227 4.227 13 C -0.211 4.211 14 C -0.189 4.189 15 C -0.032 4.032 16 N -0.349 5.349 17 C 0.334 3.666 18 O -0.439 6.439 19 C -0.252 4.252 20 S 0.049 5.951 21 C -0.676 4.676 22 H 0.081 0.919 23 C -0.157 4.157 24 N -0.553 5.553 25 Si 0.734 3.266 26 H -0.186 1.186 27 H -0.182 1.182 28 H -0.164 1.164 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.171 0.829 33 H 0.114 0.886 34 H 0.144 0.856 35 H 0.256 0.744 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.272 0.786 37.261 37.271 hybrid contribution 0.953 -1.673 -0.688 2.045 sum 1.225 -0.887 36.574 36.605 Atomic orbital electron populations 1.21795 0.95260 1.01344 1.01479 1.21580 0.94719 0.95882 0.84307 0.91702 1.22502 0.94448 0.94864 0.89232 0.85858 1.59995 1.16434 1.54094 1.00317 1.21916 0.94330 1.05285 0.86861 1.21174 0.90486 0.74711 0.83857 1.90731 1.22492 1.50425 1.81738 1.45240 1.10117 1.73886 1.05103 1.21553 0.93097 1.06795 0.83837 1.23494 1.04583 0.94605 1.00008 1.23457 1.04594 0.95030 0.98014 1.23521 1.03353 0.97342 0.94727 1.22675 0.95590 0.88367 0.96598 1.48580 1.50872 1.31682 1.03720 1.19636 0.80030 0.84135 0.82803 1.90680 1.39499 1.30168 1.83603 1.23202 1.04935 1.02800 0.94215 1.84760 1.68580 1.42852 0.98897 1.22435 1.35733 1.15588 0.93833 0.91881 1.25514 0.95755 0.98261 0.96174 1.70010 1.43382 1.37763 1.04138 0.85897 0.80936 0.79832 0.79893 1.18616 1.18184 1.16383 0.89873 0.95359 0.93332 0.82881 0.88588 0.85588 0.74444 0.87136 0.87435 0.87988 0.87480 0.86856 0.86062 0.90712 0.88884 0.90272 0.87100 0.87411 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.26 71.98 0.59 -3.20 16 2 C 0.14 3.16 3.47 45.34 0.16 3.32 16 3 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.10 1.21 3.15 46.11 0.15 1.36 16 5 H 0.12 0.90 7.83 -2.39 -0.02 0.88 16 6 N -0.68 -8.91 4.40 -489.44 -2.15 -11.06 16 7 C 0.05 0.32 6.03 85.56 0.52 0.84 16 8 C 0.51 6.92 7.87 87.66 0.69 7.61 16 9 O -0.58 -14.13 15.77 -3.06 -0.05 -14.18 16 10 N -0.69 -5.46 5.57 -442.54 -2.46 -7.92 16 11 C 0.05 0.55 6.43 45.00 0.29 0.84 16 12 C -0.19 -1.20 10.46 30.62 0.32 -0.88 16 13 C -0.17 -0.86 10.46 30.62 0.32 -0.54 16 14 C -0.15 -1.47 6.67 31.99 0.21 -1.26 16 15 C 0.09 1.48 6.71 86.79 0.58 2.06 16 16 N -0.61 -16.15 3.09 -787.23 -2.43 -18.59 16 17 C 0.55 20.36 7.65 87.66 0.67 21.03 16 18 O -0.56 -25.71 14.75 -3.04 -0.04 -25.76 16 19 C -0.10 -3.98 5.18 71.24 0.37 -3.61 16 20 S -0.18 -9.25 18.55 -56.49 -1.05 -10.30 16 21 C -0.53 -31.18 10.04 67.95 0.68 -30.50 16 22 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 23 C 0.05 2.88 5.50 84.86 0.47 3.35 16 24 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 25 Si 0.91 45.75 27.74 68.60 1.90 47.65 16 26 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.24 -12.14 6.74 99.48 0.67 -11.47 16 29 H 0.08 2.14 7.42 -2.38 -0.02 2.12 16 30 H 0.03 0.97 6.74 -2.39 -0.02 0.95 16 31 H 0.05 1.26 7.96 -2.39 -0.02 1.25 16 32 H 0.35 5.53 7.44 -89.69 -0.67 4.86 16 33 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.13 0.35 8.08 -2.39 -0.02 0.34 16 35 H 0.42 0.30 8.83 -92.71 -0.82 -0.51 16 36 H 0.11 1.75 7.40 -2.39 -0.02 1.73 16 37 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 0.87 7.77 -2.39 -0.02 0.86 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.36 7.50 -2.39 -0.02 1.35 16 45 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 46 H 0.11 3.97 7.86 -2.39 -0.02 3.95 16 47 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -84.31 397.10 -0.50 -84.82 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -0.53 Total: 10.62 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.02 Total: 0.39 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -6.75 Total: -93.23 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.09 Total: -39.94 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.05 Total: -10.30 kcal Total: -84.31 -0.50 -84.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.267 kcal (2) G-P(sol) polarization free energy of solvation -84.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds