Wall clock time and date at job start Sat Apr 11 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 120.00098 * 2 1 4 4 N 1.46489 * 109.47419 * 124.99777 * 3 2 1 5 5 C 1.34775 * 120.00337 * 179.97438 * 4 3 2 6 6 O 1.21288 * 119.99867 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00682 * 180.02562 * 5 4 3 8 8 N 1.46892 * 109.47477 * 180.02562 * 7 5 4 9 9 C 1.46907 * 111.00032 * 179.97438 * 8 7 5 10 10 H 1.08991 * 110.77866 * 323.21503 * 9 8 7 11 11 C 1.55157 * 110.71791 * 86.45276 * 9 8 7 12 12 C 1.54907 * 101.58251 * 153.86572 * 11 9 8 13 13 N 1.47427 * 104.82907 * 322.99134 * 12 11 9 14 14 C 1.34778 * 125.64500 * 204.08777 * 13 12 11 15 15 O 1.21282 * 120.00178 * 180.02562 * 14 13 12 16 16 C 1.50703 * 120.00172 * 0.02746 * 14 13 12 17 17 S 1.81000 * 109.47042 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99871 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99752 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99976 * 0.28020 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71945 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72142 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72250 * 22 20 18 26 26 C 1.47020 * 108.70573 * 24.35642 * 13 12 11 27 27 H 1.08991 * 109.88365 * 118.13107 * 26 13 12 28 28 C 1.53003 * 109.87976 * 239.29932 * 26 13 12 29 29 H 1.07998 * 120.00433 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99771 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00433 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46548 * 4.99419 * 3 2 1 33 33 H 1.09002 * 109.46884 * 245.00163 * 3 2 1 34 34 H 0.97001 * 120.00230 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46892 * 59.99729 * 7 5 4 36 36 H 1.09002 * 109.47016 * 300.00810 * 7 5 4 37 37 H 1.00895 * 111.00417 * 56.04768 * 8 7 5 38 38 H 1.09002 * 111.00591 * 35.79278 * 11 9 8 39 39 H 1.09000 * 111.00360 * 271.94099 * 11 9 8 40 40 H 1.08995 * 110.37016 * 204.15408 * 12 11 9 41 41 H 1.09004 * 110.36889 * 81.82092 * 12 11 9 42 42 H 1.09005 * 109.47194 * 59.99652 * 16 14 13 43 43 H 1.09000 * 109.46904 * 299.99694 * 16 14 13 44 44 H 0.97005 * 119.99723 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.47472 * 58.53868 * 28 26 13 46 46 H 1.09000 * 109.46953 * 178.55051 * 28 26 13 47 47 H 1.09007 * 109.47031 * 298.54243 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1313 5 6 3.7789 2.4087 1.3328 6 8 3.7151 3.3556 0.5776 7 6 4.7362 2.4362 2.4963 8 7 5.4706 3.7083 2.4963 9 6 6.4150 3.7711 3.6198 10 1 5.9951 3.2937 4.5051 11 6 7.7696 3.1195 3.2352 12 6 8.7497 3.8585 4.1802 13 7 8.2425 5.2413 4.2433 14 6 8.9729 6.3327 4.5462 15 8 8.4487 7.4262 4.5690 16 6 10.4412 6.1945 4.8567 17 16 11.1371 7.8254 5.2202 18 6 12.8117 7.3793 5.5384 19 1 13.1166 6.3453 5.4745 20 6 13.7394 8.3572 5.8700 21 7 14.9903 8.0239 6.1082 22 14 13.2106 10.1449 5.9868 23 1 13.3755 10.7973 4.6629 24 1 11.7856 10.2138 6.3985 25 1 14.0506 10.8450 6.9916 26 6 6.8067 5.2318 3.9273 27 1 6.2369 5.5986 4.7809 28 6 6.5377 6.1087 2.7027 29 1 -0.5401 0.9352 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6212 1.4026 -0.9314 34 1 3.0450 0.5746 1.7351 35 1 5.4409 1.6094 2.4066 36 1 4.1788 2.3388 3.4279 37 1 4.8358 4.4924 2.5139 38 1 8.0136 3.3128 2.1906 39 1 7.7607 2.0491 3.4410 40 1 9.7586 3.8429 3.7680 41 1 8.7366 3.4042 5.1710 42 1 10.9553 5.7638 3.9974 43 1 10.5699 5.5432 5.7212 44 1 15.6385 8.7072 6.3404 45 1 7.1163 5.7384 1.8564 46 1 5.4758 6.0764 2.4589 47 1 6.8293 7.1362 2.9204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178148574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:39 Heat of formation + Delta-G solvation = -36.611919 kcal Electronic energy + Delta-G solvation = -26553.720130 eV Core-core repulsion = 22670.664125 eV Total energy + Delta-G solvation = -3883.056005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.45136 -39.90552 -37.80710 -36.34569 -34.97412 -33.32991 -32.41996 -31.69642 -30.98530 -28.94837 -27.61833 -25.86547 -25.59494 -24.70718 -23.05555 -21.20451 -20.48340 -20.34421 -19.09802 -17.82975 -17.58792 -16.89357 -16.68699 -16.41139 -16.12160 -15.90944 -15.29463 -14.97792 -14.78992 -14.55287 -14.41481 -14.00559 -13.76973 -13.62898 -13.32754 -13.29655 -13.05467 -12.78947 -12.58088 -12.45350 -12.40195 -11.93168 -11.78002 -11.69138 -11.61432 -11.24316 -11.11467 -10.98614 -10.80434 -10.58606 -10.52817 -10.07019 -9.83439 -9.53460 -9.40931 -8.98305 -8.87847 -8.55185 -8.47080 -6.89535 -6.27159 -3.98583 1.44350 2.23518 2.63029 2.79189 2.99312 3.21031 3.35317 3.52706 3.61287 3.81961 4.12403 4.15380 4.33859 4.35390 4.43056 4.45967 4.71729 4.73421 4.80655 4.86524 4.96994 5.03928 5.12064 5.16354 5.18523 5.21693 5.23860 5.39046 5.43301 5.50914 5.58500 5.71459 5.79903 5.81579 5.89207 5.95138 6.04178 6.06345 6.09340 6.35998 6.49471 6.55499 6.89525 7.03863 7.62956 7.79902 7.95911 8.43272 8.49145 9.19208 10.82047 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.041667 B = 0.001682 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.830353 B =16638.065486 C =17027.295203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.732 5.732 5 C 0.511 3.489 6 O -0.521 6.521 7 C 0.040 3.960 8 N -0.659 5.659 9 C 0.077 3.923 10 H 0.062 0.938 11 C -0.121 4.121 12 C 0.098 3.902 13 N -0.619 5.619 14 C 0.549 3.451 15 O -0.515 6.515 16 C -0.117 4.117 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.235 1.235 25 H -0.274 1.274 26 C 0.139 3.861 27 H 0.072 0.928 28 C -0.155 4.155 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.401 0.599 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.356 0.644 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.270 0.730 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.361 -21.148 -8.353 35.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.386 5.386 5 C 0.297 3.703 6 O -0.396 6.396 7 C -0.092 4.092 8 N -0.295 5.295 9 C -0.033 4.033 10 H 0.080 0.920 11 C -0.159 4.159 12 C -0.025 4.025 13 N -0.356 5.356 14 C 0.337 3.663 15 O -0.390 6.390 16 C -0.268 4.268 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.159 1.159 25 H -0.200 1.200 26 C 0.035 3.965 27 H 0.090 0.910 28 C -0.214 4.214 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.179 0.821 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.482 -18.869 -9.254 34.596 hybrid contribution 0.124 -1.042 1.078 1.504 sum -27.357 -19.910 -8.176 34.809 Atomic orbital electron populations 1.24008 0.95811 1.02533 0.97890 1.23004 0.96247 0.98095 1.02306 1.20396 0.91787 0.95546 0.89901 1.45971 1.41343 1.20233 1.31079 1.20645 0.80673 0.82349 0.86669 1.90753 1.67114 1.35149 1.46544 1.21845 0.96015 0.95806 0.95549 1.60400 1.21506 1.03299 1.44292 1.22584 0.93579 0.95513 0.91655 0.92032 1.22857 0.93028 0.99067 1.00993 1.22335 0.98860 0.81768 0.99559 1.48463 1.09036 1.07087 1.71022 1.19955 0.87983 0.82652 0.75703 1.90690 1.72384 1.25237 1.50649 1.23260 0.93513 1.05038 1.04981 1.84788 1.09514 1.06295 1.90961 1.22314 0.91508 0.98406 1.54595 0.89415 1.24703 0.93995 0.99249 0.93294 1.69943 1.02121 1.34488 1.45184 0.86739 0.81405 0.84521 0.79220 1.19202 1.15916 1.19952 1.21481 0.82547 0.94345 0.98168 0.90960 1.22011 1.01385 1.00841 0.97122 0.88122 0.87801 0.86623 0.91068 0.90537 0.76484 0.87814 0.92131 0.82083 0.89256 0.90251 0.89938 0.91293 0.88596 0.88616 0.91967 0.91610 0.91972 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 14.32 29.02 0.42 -0.09 16 2 C -0.18 -0.61 9.63 -36.02 -0.35 -0.96 16 3 C 0.15 0.79 6.11 -5.20 -0.03 0.76 16 4 N -0.73 -3.69 5.55 -61.47 -0.34 -4.03 16 5 C 0.51 4.03 7.87 -10.99 -0.09 3.95 16 6 O -0.52 -6.51 16.20 5.55 0.09 -6.42 16 7 C 0.04 0.23 6.03 -4.98 -0.03 0.20 16 8 N -0.66 -5.50 5.22 -106.05 -0.55 -6.05 16 9 C 0.08 0.64 3.10 -65.87 -0.20 0.43 16 10 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 11 C -0.12 -0.97 6.72 -24.58 -0.17 -1.14 16 12 C 0.10 1.01 6.69 -2.53 -0.02 0.99 16 13 N -0.62 -8.64 3.08 -163.01 -0.50 -9.14 16 14 C 0.55 10.23 7.65 -10.98 -0.08 10.15 16 15 O -0.52 -11.40 14.75 5.56 0.08 -11.32 16 16 C -0.12 -2.34 5.16 36.01 0.19 -2.16 16 17 S -0.14 -3.66 18.54 -107.50 -1.99 -5.65 16 18 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 22 Si 0.86 22.00 27.74 -169.99 -4.72 17.29 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.24 -6.04 6.73 56.52 0.38 -5.66 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.14 1.64 3.42 -66.95 -0.23 1.41 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 C -0.16 -2.00 8.38 37.16 0.31 -1.69 16 29 H 0.10 0.30 7.84 -52.49 -0.41 -0.11 16 30 H 0.10 0.21 8.06 -52.49 -0.42 -0.22 16 31 H 0.12 0.27 8.06 -52.49 -0.42 -0.15 16 32 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.40 0.88 8.46 -40.82 -0.35 0.54 16 35 H 0.10 0.44 8.13 -51.93 -0.42 0.02 16 36 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 37 H 0.36 3.26 6.14 -39.29 -0.24 3.02 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.80 7.85 -51.91 -0.41 1.39 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.06 0.68 6.27 -51.93 -0.33 0.36 16 47 H 0.07 1.14 6.74 -51.92 -0.35 0.79 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -36.66 398.77 -8.73 -45.39 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.51 Total: 0.08 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.07 Total: -0.22 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.62 Total: -45.15 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.74 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.66 -8.73 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178148574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.775 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds