Wall clock time and date at job start Sat Apr 11 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.87001 * 2 1 4 4 C 1.54318 * 110.01194 * 121.09608 * 2 1 3 5 5 H 1.09000 * 110.72268 * 215.65742 * 4 2 1 6 6 N 1.46892 * 110.72320 * 338.93381 * 4 2 1 7 7 C 1.46898 * 111.00562 * 198.65865 * 6 4 2 8 8 H 1.09004 * 110.43077 * 323.91747 * 7 6 4 9 9 C 1.54624 * 110.49090 * 201.22932 * 7 6 4 10 10 C 1.54476 * 101.76455 * 266.11639 * 9 7 6 11 11 N 1.46759 * 105.47563 * 334.58548 * 10 9 7 12 12 C 1.46498 * 124.34879 * 196.99538 * 11 10 9 13 13 C 1.34415 * 111.30154 * 17.01221 * 11 10 9 14 14 O 1.21285 * 124.94645 * 179.55796 * 13 11 10 15 15 C 1.55163 * 102.94219 * 97.29783 * 4 2 1 16 16 C 1.54697 * 101.67244 * 35.33499 * 15 4 2 17 17 N 1.47017 * 109.88451 * 238.98519 * 2 1 3 18 18 C 1.34781 * 125.64824 * 59.32764 * 17 2 1 19 19 O 1.21282 * 119.99997 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00217 * 180.02562 * 18 17 2 21 21 S 1.80992 * 109.47187 * 179.97438 * 20 18 17 22 22 C 1.76206 * 99.99971 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99629 * 0.02562 * 22 21 20 24 24 C 1.38796 * 120.00011 * 179.72613 * 22 21 20 25 25 N 1.31629 * 120.00124 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00189 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47134 * 89.99715 * 26 24 22 28 28 H 1.48501 * 109.47381 * 209.99875 * 26 24 22 29 29 H 1.48503 * 109.47002 * 330.00188 * 26 24 22 30 30 H 1.08996 * 109.46751 * 187.12688 * 1 2 3 31 31 H 1.09005 * 109.46906 * 307.12270 * 1 2 3 32 32 H 1.08993 * 109.47354 * 67.12397 * 1 2 3 33 33 H 1.00896 * 111.00433 * 322.61422 * 6 4 2 34 34 H 1.08995 * 110.97035 * 24.24081 * 9 7 6 35 35 H 1.09000 * 110.97165 * 148.00143 * 9 7 6 36 36 H 1.09000 * 110.24689 * 215.58223 * 10 9 7 37 37 H 1.09002 * 110.31905 * 93.62625 * 10 9 7 38 38 H 1.09001 * 109.47154 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47540 * 299.99501 * 12 11 10 40 40 H 1.09002 * 109.47720 * 59.99881 * 12 11 10 41 41 H 1.08993 * 111.00465 * 153.57444 * 15 4 2 42 42 H 1.09000 * 111.00143 * 277.39052 * 15 4 2 43 43 H 1.08997 * 110.38717 * 204.36280 * 16 15 4 44 44 H 1.09002 * 110.23557 * 82.11829 * 16 15 4 45 45 H 1.09006 * 109.47094 * 59.99601 * 20 18 17 46 46 H 1.08998 * 109.47215 * 300.00289 * 20 18 17 47 47 H 0.97004 * 120.00096 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7489 1.2416 5 1 2.9684 -0.2808 1.6162 6 7 1.0314 -0.8049 2.2906 7 6 1.6305 -1.1019 3.5986 8 1 2.4619 -1.7980 3.4870 9 6 0.5668 -1.6749 4.5636 10 6 0.0929 -0.4030 5.3011 11 7 1.2170 0.5372 5.2223 12 6 1.3650 1.7216 6.0717 13 6 2.0932 0.1721 4.2706 14 8 3.1068 0.7764 3.9908 15 6 2.3575 -2.1680 0.6903 16 6 2.8554 -1.8497 -0.7394 17 7 2.0301 -0.7124 -1.1849 18 6 1.7718 -0.3835 -2.4662 19 8 1.0713 0.5742 -2.7171 20 6 2.3526 -1.2066 -3.5871 21 16 1.8272 -0.5177 -5.1762 22 6 2.6264 -1.6395 -6.2752 23 1 3.2214 -2.4500 -5.8809 24 6 2.4861 -1.4853 -7.6474 25 7 3.0827 -2.3236 -8.4683 26 14 1.4507 -0.0879 -8.3292 27 1 2.3063 1.1086 -8.5325 28 1 0.8579 -0.4988 -9.6273 29 1 0.3648 0.2372 -7.3699 30 1 -0.3633 -1.0197 0.1275 31 1 -0.3633 0.6203 0.8195 32 1 -0.3634 0.3995 -0.9468 33 1 0.5000 0.0522 2.3226 34 1 -0.2532 -2.1344 4.0119 35 1 1.0135 -2.3854 5.2591 36 1 -0.1343 -0.6331 6.3420 37 1 -0.7844 0.0158 4.8079 38 1 2.2845 2.2447 5.8087 39 1 0.5135 2.3852 5.9214 40 1 1.4076 1.4162 7.1171 41 1 3.1345 -2.6589 1.2762 42 1 1.4522 -2.7743 0.6598 43 1 2.7039 -2.7079 -1.3941 44 1 3.9084 -1.5690 -0.7181 45 1 2.0006 -2.2348 -3.5030 46 1 3.4406 -1.1889 -3.5248 47 1 2.9850 -2.2155 -9.4274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178156478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:52 Heat of formation + Delta-G solvation = -50.593187 kcal Electronic energy + Delta-G solvation = -27725.481906 eV Core-core repulsion = 23841.819628 eV Total energy + Delta-G solvation = -3883.662278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.19348 -40.06237 -37.74569 -36.90002 -35.15987 -32.55826 -32.41589 -31.31502 -30.39929 -28.49779 -27.42383 -26.53030 -25.59573 -25.24400 -23.06147 -22.09994 -20.58200 -19.99004 -19.08343 -17.72157 -17.32766 -17.15217 -16.67613 -16.38948 -16.08395 -15.46103 -15.08278 -14.96264 -14.65993 -14.55701 -14.17653 -14.05336 -13.81146 -13.48483 -13.23395 -13.18016 -13.02725 -12.79188 -12.66604 -12.58183 -12.47491 -12.12322 -11.87121 -11.83259 -11.63867 -11.49548 -11.27605 -11.23703 -10.99009 -10.82145 -10.60893 -10.57085 -9.83581 -9.40704 -9.26267 -8.98201 -8.88758 -8.54398 -8.46987 -6.89401 -6.26872 -3.98329 2.01905 2.48970 2.69339 2.99100 3.18306 3.35116 3.52405 3.55603 3.66229 3.82304 3.98360 4.14790 4.35232 4.37822 4.43785 4.55620 4.73820 4.76663 4.84885 4.90496 4.91791 5.00290 5.10151 5.12198 5.16829 5.22448 5.23735 5.35651 5.37072 5.40980 5.47578 5.55761 5.59969 5.68236 5.80286 5.92548 5.96461 6.03086 6.05196 6.29081 6.44532 6.52931 6.54766 6.73478 7.63457 7.65321 7.96208 8.43758 8.48996 9.19375 10.82301 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.002103 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.589024 B =13310.119944 C =13579.266551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 H 0.071 0.929 4 C 0.070 3.930 5 H 0.073 0.927 6 N -0.644 5.644 7 C 0.057 3.943 8 H 0.115 0.885 9 C -0.124 4.124 10 C 0.098 3.902 11 N -0.622 5.622 12 C 0.091 3.909 13 C 0.483 3.517 14 O -0.526 6.526 15 C -0.119 4.119 16 C 0.098 3.902 17 N -0.617 5.617 18 C 0.549 3.451 19 O -0.516 6.516 20 C -0.117 4.117 21 S -0.142 6.142 22 C -0.520 4.520 23 H 0.088 0.912 24 C 0.095 3.905 25 N -0.880 5.880 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.348 0.652 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 0.297 33.098 33.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.089 0.911 4 C -0.040 4.040 5 H 0.091 0.909 6 N -0.277 5.277 7 C -0.057 4.057 8 H 0.133 0.867 9 C -0.162 4.162 10 C -0.024 4.024 11 N -0.358 5.358 12 C -0.051 4.051 13 C 0.268 3.732 14 O -0.401 6.401 15 C -0.157 4.157 16 C -0.025 4.025 17 N -0.355 5.355 18 C 0.337 3.663 19 O -0.391 6.391 20 C -0.268 4.268 21 S 0.084 5.916 22 C -0.668 4.668 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.517 5.517 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.159 1.159 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.330 1.443 32.212 32.860 hybrid contribution 0.974 0.252 0.147 1.017 sum -5.356 1.695 32.359 32.843 Atomic orbital electron populations 1.22014 0.94096 1.02680 1.02645 1.21460 0.95448 0.95577 0.84011 0.91093 1.22706 0.93874 0.96923 0.90522 0.90870 1.60940 1.23747 1.41621 1.01437 1.22441 0.98586 0.94772 0.89878 0.86741 1.22686 0.99801 0.96364 0.97388 1.22183 0.89122 0.89291 1.01845 1.48232 1.24238 1.26680 1.36646 1.21590 1.03132 0.86579 0.93832 1.22070 0.82961 0.88060 0.80124 1.90751 1.24926 1.59326 1.65115 1.22798 1.02308 0.96054 0.94581 1.22294 0.95102 0.89671 0.95458 1.48441 1.51783 1.30699 1.04558 1.19954 0.80136 0.84713 0.81447 1.90684 1.37408 1.28334 1.82671 1.23258 1.04072 1.02433 0.97014 1.84776 1.68156 1.43027 0.95651 1.22310 1.35867 1.15757 0.92819 0.89390 1.24711 0.94784 0.96022 0.95817 1.69940 1.42055 1.36232 1.03483 0.86734 0.82439 0.82538 0.80140 1.19233 1.19963 1.15909 0.91427 0.92586 0.90725 0.83111 0.87553 0.89468 0.90201 0.90733 0.89966 0.91930 0.91952 0.90145 0.89301 0.89874 0.91243 0.88542 0.88624 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.30 37.16 0.31 -1.54 16 2 C 0.14 1.71 3.40 -66.96 -0.23 1.49 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.07 0.65 2.95 -65.88 -0.19 0.46 16 5 H 0.07 0.79 7.41 -51.93 -0.38 0.41 16 6 N -0.64 -4.71 5.30 -97.84 -0.52 -5.23 16 7 C 0.06 0.36 3.10 -67.73 -0.21 0.15 16 8 H 0.11 0.73 7.79 -51.93 -0.40 0.33 16 9 C -0.12 -0.43 6.89 -25.10 -0.17 -0.61 16 10 C 0.10 0.35 7.35 -3.13 -0.02 0.33 16 11 N -0.62 -4.07 3.33 -180.29 -0.60 -4.67 16 12 C 0.09 0.48 11.14 59.85 0.67 1.15 16 13 C 0.48 4.42 7.26 -10.86 -0.08 4.34 16 14 O -0.53 -7.12 16.88 5.55 0.09 -7.03 16 15 C -0.12 -0.99 6.55 -24.69 -0.16 -1.15 16 16 C 0.10 1.06 6.68 -2.65 -0.02 1.04 16 17 N -0.62 -8.83 3.08 -163.16 -0.50 -9.33 16 18 C 0.55 10.31 7.64 -10.98 -0.08 10.23 16 19 O -0.52 -11.44 14.66 5.56 0.08 -11.36 16 20 C -0.12 -2.35 5.17 36.00 0.19 -2.17 16 21 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 22 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 23 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 24 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 25 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 26 Si 0.86 22.02 27.74 -169.99 -4.72 17.30 16 27 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.24 -6.04 6.74 56.52 0.38 -5.65 16 30 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.06 0.53 6.72 -51.93 -0.35 0.18 16 32 H 0.07 1.14 6.52 -51.93 -0.34 0.80 16 33 H 0.35 2.63 6.47 -39.29 -0.25 2.38 16 34 H 0.11 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.58 7.53 -51.93 -0.39 0.19 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 1.80 7.84 -51.91 -0.41 1.40 16 46 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -36.44 388.09 -8.89 -45.32 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.56 Total: -0.85 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 0.21 Total: 1.61 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.85 Total: -45.18 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.44 -8.89 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178156478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.270 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds