Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.35149 * 2 1 4 4 C 1.54296 * 110.47370 * 237.77735 * 2 1 3 5 5 N 1.47904 * 107.08346 * 242.52693 * 4 2 1 6 6 C 1.46894 * 110.99981 * 214.00823 * 5 4 2 7 7 C 1.50704 * 109.47076 * 187.27699 * 6 5 4 8 8 O 1.21284 * 119.99809 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00134 * 180.02562 * 7 6 5 10 10 C 1.47065 * 136.05750 * 359.62198 * 9 7 6 11 11 C 1.53237 * 88.08627 * 207.20861 * 10 9 7 12 12 C 1.47071 * 136.05849 * 179.97438 * 9 7 6 13 13 C 1.48532 * 105.82061 * 334.52849 * 5 4 2 14 14 C 1.54594 * 110.31088 * 122.14005 * 2 1 3 15 15 H 1.09006 * 110.72240 * 22.34085 * 14 2 1 16 16 N 1.46499 * 110.72756 * 259.23165 * 14 2 1 17 17 C 1.34778 * 120.00278 * 157.44746 * 16 14 2 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99753 * 25 23 21 27 27 H 1.48497 * 109.46782 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00030 * 25 23 21 29 29 H 1.09008 * 109.46976 * 297.85595 * 1 2 3 30 30 H 1.08993 * 109.47651 * 57.85772 * 1 2 3 31 31 H 1.09002 * 109.47087 * 177.86003 * 1 2 3 32 32 H 1.09001 * 110.02354 * 123.10405 * 4 2 1 33 33 H 1.08990 * 109.94934 * 1.91516 * 4 2 1 34 34 H 1.08997 * 109.47693 * 307.27276 * 6 5 4 35 35 H 1.08997 * 109.47426 * 67.28156 * 6 5 4 36 36 H 1.09001 * 113.46775 * 321.93939 * 10 9 7 37 37 H 1.08996 * 113.47000 * 92.38059 * 10 9 7 38 38 H 1.09002 * 114.32984 * 220.47060 * 11 10 9 39 39 H 1.09004 * 114.20024 * 87.72336 * 11 10 9 40 40 H 1.08992 * 113.46647 * 267.61985 * 12 9 7 41 41 H 1.08997 * 113.46644 * 38.00077 * 12 9 7 42 42 H 1.09001 * 110.66278 * 280.76390 * 13 5 4 43 43 H 1.09000 * 110.80406 * 157.70693 * 13 5 4 44 44 H 0.97000 * 119.99972 * 337.45102 * 16 14 2 45 45 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 46 46 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 47 47 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0219 0.0000 4 6 2.0697 -0.7708 -1.2229 5 7 2.8326 -1.9273 -0.7054 6 6 3.9775 -2.2336 -1.5733 7 6 4.6230 -3.5173 -1.1190 8 8 4.1733 -4.1182 -0.1663 9 7 5.7001 -3.9977 -1.7714 10 6 6.5084 -3.5848 -2.9285 11 6 6.8519 -5.0616 -3.1505 12 6 6.5805 -5.1688 -1.6432 13 6 3.2848 -1.5382 0.6549 14 6 2.0666 -0.7713 1.2276 15 1 1.3161 -1.4660 1.6049 16 7 2.4866 0.1571 2.2802 17 6 2.5505 -0.2597 3.5603 18 8 2.2608 -1.4035 3.8408 19 6 2.9821 0.6954 4.6431 20 16 2.9669 -0.1563 6.2401 21 6 3.4973 1.1547 7.2911 22 1 3.7170 2.1263 6.8737 23 6 3.6266 0.9407 8.6564 24 7 3.3582 -0.2433 9.1653 25 14 4.1814 2.3327 9.7717 26 1 3.2180 3.4586 9.6747 27 1 4.2395 1.8497 11.1747 28 1 5.5283 2.7963 9.3521 29 1 -0.3633 0.4802 0.9087 30 1 -0.3634 0.5467 -0.8701 31 1 -0.3633 -1.0270 -0.0384 32 1 2.7242 -0.1271 -1.8106 33 1 1.2405 -1.1185 -1.8388 34 1 3.6345 -2.3437 -2.6020 35 1 4.7033 -1.4223 -1.5172 36 1 5.9195 -3.1515 -3.7369 37 1 7.3705 -2.9742 -2.6601 38 1 7.8891 -5.2440 -3.4317 39 1 6.1359 -5.5982 -3.7730 40 1 7.4619 -4.9840 -1.0293 41 1 6.0530 -6.0795 -1.3598 42 1 4.1574 -0.8874 0.5986 43 1 3.5023 -2.4200 1.2575 44 1 2.7187 1.0718 2.0559 45 1 2.2960 1.5417 4.6757 46 1 3.9900 1.0527 4.4319 47 1 3.4489 -0.3929 10.1193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = -50.485318 kcal Electronic energy + Delta-G solvation = -27098.832602 eV Core-core repulsion = 23215.175001 eV Total energy + Delta-G solvation = -3883.657601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52116 -40.96614 -39.72331 -38.57104 -35.64909 -34.59743 -33.81423 -31.55212 -31.22304 -29.32393 -28.11022 -27.64961 -26.86106 -25.63208 -23.30539 -22.38421 -21.78768 -21.27228 -19.92036 -19.78092 -18.27889 -17.94258 -17.73344 -17.24770 -16.89360 -16.79303 -16.51474 -16.25481 -15.99458 -15.78739 -15.14415 -14.78680 -14.70954 -14.65140 -14.45483 -14.10180 -14.01753 -13.65462 -13.48784 -13.45007 -13.24633 -13.18352 -12.94540 -12.87333 -12.64268 -12.56933 -12.35512 -12.24492 -11.95367 -11.78464 -11.69120 -11.66758 -11.13961 -10.98982 -10.80771 -10.29112 -10.16636 -9.75243 -9.46123 -8.69510 -8.35342 -6.14626 1.24292 1.43278 1.44950 1.54806 1.56579 1.56768 1.77557 2.17102 2.26610 2.98399 2.99609 3.29459 3.37701 3.45080 3.51814 3.65153 3.91114 3.96478 4.06235 4.12015 4.19333 4.25755 4.27659 4.29237 4.34619 4.46733 4.49658 4.53531 4.58821 4.60887 4.66799 4.80367 4.86025 4.90068 4.99757 5.00059 5.07619 5.09049 5.30588 5.34507 5.39940 5.41281 5.75094 5.91335 6.18429 6.47630 6.72448 7.05070 7.15873 7.22953 8.73806 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002247 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.638895 B =12456.616424 C =13946.626815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.110 0.890 4 C 0.046 3.954 5 N -0.521 5.521 6 C 0.044 3.956 7 C 0.524 3.476 8 O -0.581 6.581 9 N -0.664 5.664 10 C 0.100 3.900 11 C -0.134 4.134 12 C 0.084 3.916 13 C 0.037 3.963 14 C 0.145 3.855 15 H 0.066 0.934 16 N -0.703 5.703 17 C 0.532 3.468 18 O -0.565 6.565 19 C -0.126 4.126 20 S -0.158 6.158 21 C -0.545 4.545 22 H 0.085 0.915 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.002 2.998 26 H -0.260 1.260 27 H -0.279 1.279 28 H -0.261 1.261 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.418 0.582 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 2.551 -35.314 35.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.129 0.871 4 C -0.081 4.081 5 N -0.246 5.246 6 C -0.087 4.087 7 C 0.314 3.686 8 O -0.460 6.460 9 N -0.401 5.401 10 C -0.021 4.021 11 C -0.171 4.171 12 C -0.039 4.039 13 C -0.092 4.092 14 C 0.039 3.961 15 H 0.085 0.915 16 N -0.357 5.357 17 C 0.318 3.682 18 O -0.443 6.443 19 C -0.277 4.277 20 S 0.069 5.931 21 C -0.693 4.693 22 H 0.103 0.897 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.823 3.177 26 H -0.185 1.185 27 H -0.205 1.205 28 H -0.186 1.186 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.153 0.847 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.256 0.744 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.604 -0.140 -34.103 34.413 hybrid contribution 1.173 2.234 1.113 2.758 sum 5.777 2.093 -32.990 33.557 Atomic orbital electron populations 1.21810 0.93111 1.02071 1.02738 1.22308 0.97523 0.99975 0.91627 0.87145 1.23123 0.98622 0.89994 0.96319 1.64347 1.21003 1.37968 1.01296 1.22133 0.93286 0.93730 0.99534 1.20872 0.79402 0.86977 0.81306 1.90753 1.64336 1.61307 1.29586 1.49993 1.27663 1.28376 1.34077 1.23251 0.94286 0.98122 0.86476 1.23285 1.04784 0.95750 0.93306 1.23209 0.92662 0.88762 0.99267 1.23396 0.96770 0.98171 0.90845 1.21870 0.95379 0.91326 0.87496 0.91526 1.45693 1.69323 1.15637 1.05038 1.20203 0.76311 0.87671 0.84023 1.90723 1.49303 1.21411 1.82881 1.23349 1.05938 1.01796 0.96617 1.85714 1.88974 1.20383 0.98017 1.23170 1.52667 0.98544 0.94937 0.89693 1.26201 0.94729 0.99483 0.99015 1.70201 1.46895 1.24046 1.13773 0.84960 0.79226 0.77281 0.76244 1.18459 1.20454 1.18560 0.93237 0.89521 0.93319 0.90100 0.88396 0.84662 0.89486 0.88090 0.87941 0.86392 0.88512 0.89256 0.92604 0.92739 0.93652 0.74365 0.86799 0.87124 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.90 71.98 0.64 -1.53 16 2 C -0.10 -1.50 3.33 -9.81 -0.03 -1.53 16 3 H 0.11 1.16 7.73 -2.39 -0.02 1.14 16 4 C 0.05 0.63 6.35 86.55 0.55 1.18 16 5 N -0.52 -11.65 4.95 -886.98 -4.39 -16.05 16 6 C 0.04 0.73 5.01 85.56 0.43 1.16 16 7 C 0.52 13.30 7.88 87.66 0.69 13.99 16 8 O -0.58 -22.34 15.62 -3.04 -0.05 -22.39 16 9 N -0.66 -11.62 3.69 -858.91 -3.17 -14.79 16 10 C 0.10 0.58 8.40 83.09 0.70 1.28 16 11 C -0.13 -0.67 8.48 30.85 0.26 -0.41 16 12 C 0.08 1.20 8.61 83.19 0.72 1.92 16 13 C 0.04 1.07 5.54 86.65 0.48 1.55 16 14 C 0.15 3.91 2.92 46.19 0.13 4.05 16 15 H 0.07 2.35 7.34 -2.38 -0.02 2.33 16 16 N -0.70 -19.29 5.19 -436.85 -2.27 -21.56 16 17 C 0.53 21.24 7.85 87.66 0.69 21.93 16 18 O -0.57 -29.03 15.55 -3.02 -0.05 -29.08 16 19 C -0.13 -5.19 6.16 71.23 0.44 -4.75 16 20 S -0.16 -9.16 20.57 -56.49 -1.16 -10.32 16 21 C -0.55 -31.86 9.50 67.96 0.65 -31.22 16 22 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 23 C 0.01 0.60 5.49 84.86 0.47 1.06 16 24 N -0.91 -57.67 13.22 21.65 0.29 -57.38 16 25 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 29 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.60 7.77 -2.39 -0.02 0.58 16 33 H 0.10 1.14 7.70 -2.39 -0.02 1.13 16 34 H 0.14 1.33 8.11 -2.39 -0.02 1.31 16 35 H 0.09 1.05 7.90 -2.39 -0.02 1.03 16 36 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.10 0.48 8.14 -2.39 -0.02 0.47 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.05 1.38 7.85 -2.39 -0.02 1.36 16 43 H 0.04 1.84 6.92 -2.39 -0.02 1.82 16 44 H 0.42 7.81 8.36 -92.71 -0.78 7.04 16 45 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 46 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 47 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -95.24 399.47 -1.78 -97.02 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.19 Total: 19.50 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.81 Total: 8.68 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -9.55 Total: -109.77 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.09 Total: -51.47 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.16 Total: -10.32 kcal Total: -95.24 -1.78 -97.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.530 kcal (2) G-P(sol) polarization free energy of solvation -95.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds