Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.64312 * 2 1 4 4 C 1.54937 * 110.72505 * 236.65858 * 2 1 3 5 5 N 1.48538 * 103.22756 * 204.22665 * 4 2 1 6 6 C 1.46896 * 110.99827 * 159.72002 * 5 4 2 7 7 H 1.09001 * 110.43640 * 310.70012 * 6 5 4 8 8 C 1.54627 * 110.48293 * 188.16028 * 6 5 4 9 9 C 1.54482 * 101.76363 * 216.52452 * 8 6 5 10 10 N 1.46760 * 105.47473 * 25.41260 * 9 8 6 11 11 C 1.46501 * 124.34960 * 162.98418 * 10 9 8 12 12 C 1.34657 * 111.33736 * 342.87395 * 10 9 8 13 13 O 1.21276 * 125.07274 * 180.51568 * 12 10 9 14 14 C 1.48128 * 105.82240 * 39.26118 * 5 4 2 15 15 C 1.53995 * 106.94376 * 334.59195 * 14 5 4 16 16 H 1.09004 * 110.30737 * 120.26666 * 15 14 5 17 17 N 1.46497 * 110.30961 * 242.33323 * 15 14 5 18 18 C 1.34778 * 120.00309 * 272.21655 * 17 15 14 19 19 O 1.21276 * 119.99491 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99778 * 180.02562 * 18 17 15 21 21 S 1.81004 * 109.46742 * 179.97438 * 20 18 17 22 22 C 1.76203 * 99.99907 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99736 * 359.97438 * 22 21 20 24 24 C 1.38798 * 119.99832 * 180.27629 * 22 21 20 25 25 N 1.31634 * 120.00296 * 359.72198 * 24 22 21 26 26 Si 1.86801 * 119.99859 * 179.72079 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99855 * 26 24 22 28 28 H 1.48499 * 109.47039 * 210.00015 * 26 24 22 29 29 H 1.48501 * 109.47275 * 329.99815 * 26 24 22 30 30 H 1.08998 * 109.47629 * 296.84355 * 1 2 3 31 31 H 1.09004 * 109.47434 * 56.84790 * 1 2 3 32 32 H 1.09002 * 109.47296 * 176.84120 * 1 2 3 33 33 H 1.08999 * 110.66657 * 322.65959 * 4 2 1 34 34 H 1.09002 * 110.66890 * 85.78935 * 4 2 1 35 35 H 1.09000 * 110.97570 * 334.64098 * 8 6 5 36 36 H 1.08997 * 110.97450 * 98.36811 * 8 6 5 37 37 H 1.08995 * 110.24904 * 144.41695 * 9 8 6 38 38 H 1.09004 * 110.24512 * 266.32950 * 9 8 6 39 39 H 1.09000 * 109.47326 * 90.00236 * 11 10 9 40 40 H 1.09002 * 109.47353 * 210.00294 * 11 10 9 41 41 H 1.09000 * 109.47384 * 330.00024 * 11 10 9 42 42 H 1.08995 * 109.94578 * 215.28835 * 14 5 4 43 43 H 1.08999 * 109.99000 * 93.92359 * 14 5 4 44 44 H 0.97005 * 119.99622 * 92.20855 * 17 15 14 45 45 H 1.09000 * 109.47396 * 59.99696 * 20 18 17 46 46 H 1.09001 * 109.47080 * 299.99119 * 20 18 17 47 47 H 0.96995 * 120.00136 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0783 -0.7965 -1.2106 5 7 3.4318 -1.2104 -0.7602 6 6 3.9212 -2.3522 -1.5442 7 1 3.1641 -3.1351 -1.5896 8 6 5.2330 -2.9024 -0.9380 9 6 6.0225 -3.3008 -2.2047 10 7 5.4950 -2.4506 -3.2784 11 6 6.1701 -2.2212 -4.5582 12 6 4.3097 -1.9100 -2.9378 13 8 3.6504 -1.1757 -3.6427 14 6 3.2889 -1.5716 0.6692 15 6 2.0771 -0.7907 1.2105 16 1 1.3201 -1.4795 1.5858 17 7 2.4970 0.1288 2.2708 18 6 2.5508 -0.2957 3.5488 19 8 2.2511 -1.4389 3.8211 20 6 2.9823 0.6505 4.6395 21 16 2.9509 -0.2098 6.2317 22 6 3.4825 1.0921 7.2935 23 1 3.7120 2.0642 6.8827 24 6 3.6122 0.8665 8.6568 25 7 3.3329 -0.3185 9.1574 26 14 4.1832 2.2444 9.7813 27 1 3.0049 3.0040 10.2711 28 1 4.9162 1.6684 10.9372 29 1 5.0825 3.1563 9.0296 30 1 -0.3634 0.4640 0.9169 31 1 -0.3634 0.5620 -0.8604 32 1 -0.3634 -1.0261 -0.0566 33 1 1.4560 -1.6687 -1.4109 34 1 2.1444 -0.1591 -2.0924 35 1 5.7586 -2.1288 -0.3781 36 1 5.0381 -3.7714 -0.3098 37 1 7.0862 -3.1111 -2.0615 38 1 5.8555 -4.3524 -2.4381 39 1 5.8501 -2.9747 -5.2780 40 1 5.9135 -1.2298 -4.9318 41 1 7.2488 -2.2883 -4.4172 42 1 4.1880 -1.2878 1.2161 43 1 3.1142 -2.6431 0.7671 44 1 2.7365 1.0433 2.0530 45 1 2.3015 1.5011 4.6730 46 1 3.9938 1.0023 4.4362 47 1 3.4232 -0.4760 10.1102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206095743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = -57.310265 kcal Electronic energy + Delta-G solvation = -27472.678925 eV Core-core repulsion = 23588.725373 eV Total energy + Delta-G solvation = -3883.953553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.05446 -39.73170 -38.17192 -36.71748 -34.72533 -33.09197 -32.42693 -31.47854 -29.90963 -28.15581 -27.13698 -27.05572 -25.49634 -24.88325 -22.67475 -21.54791 -20.21459 -20.04308 -19.73690 -17.80648 -17.46400 -17.01508 -16.57105 -16.26242 -16.00010 -15.20018 -14.93600 -14.80143 -14.79189 -14.32518 -14.14553 -14.01461 -13.59467 -13.33061 -13.21672 -13.04859 -13.04166 -12.79900 -12.72400 -12.54285 -12.47412 -12.24656 -11.99447 -11.85732 -11.52866 -11.32690 -11.06284 -11.02769 -11.01435 -10.85775 -10.74193 -10.04627 -9.81196 -9.39071 -9.11656 -9.07003 -8.90634 -8.71293 -8.23728 -6.49871 -6.21800 -3.92137 2.20785 2.60726 3.03613 3.07864 3.22431 3.28095 3.32397 3.63195 3.72789 3.86069 4.11306 4.20568 4.32382 4.48413 4.58347 4.60713 4.80909 4.86908 4.88764 5.06268 5.06386 5.10301 5.13437 5.16097 5.18379 5.28863 5.30924 5.38999 5.48877 5.51866 5.60500 5.63362 5.66836 5.86559 5.87781 5.90780 5.93499 6.02855 6.11244 6.15618 6.52948 6.61373 6.68837 6.72022 7.59783 7.73082 7.85315 8.35360 8.61553 9.23712 10.85589 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002154 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.923772 B =12996.835630 C =13830.868957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.043 3.957 5 N -0.498 5.498 6 C 0.041 3.959 7 H 0.082 0.918 8 C -0.129 4.129 9 C 0.105 3.895 10 N -0.626 5.626 11 C 0.098 3.902 12 C 0.532 3.468 13 O -0.521 6.521 14 C 0.026 3.974 15 C 0.142 3.858 16 H 0.097 0.903 17 N -0.728 5.728 18 C 0.533 3.467 19 O -0.518 6.518 20 C -0.153 4.153 21 S -0.061 6.061 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.400 0.600 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -4.130 -26.635 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.084 4.084 5 N -0.223 5.223 6 C -0.071 4.071 7 H 0.099 0.901 8 C -0.167 4.167 9 C -0.018 4.018 10 N -0.361 5.361 11 C -0.044 4.044 12 C 0.319 3.681 13 O -0.396 6.396 14 C -0.102 4.102 15 C 0.036 3.964 16 H 0.115 0.885 17 N -0.382 5.382 18 C 0.319 3.681 19 O -0.393 6.393 20 C -0.304 4.304 21 S 0.166 5.834 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.234 0.766 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.752 -5.347 -26.539 27.212 hybrid contribution 0.440 1.827 0.392 1.920 sum 3.192 -3.520 -26.147 26.576 Atomic orbital electron populations 1.21770 0.93737 1.02226 1.02358 1.22376 0.96206 1.00102 0.93349 0.89206 1.23370 0.87784 0.99050 0.98246 1.64847 1.24563 1.30804 1.02114 1.22517 0.98153 0.93729 0.92709 0.90079 1.22775 0.94384 1.02622 0.96938 1.22103 0.99203 0.94523 0.85992 1.48134 1.21817 1.48885 1.17309 1.21537 0.97011 1.02256 0.83626 1.20601 0.80516 0.78993 0.88022 1.90684 1.55416 1.35774 1.57707 1.23445 0.99891 0.98939 0.87969 1.21782 0.95491 0.91978 0.87150 0.88497 1.46084 1.70705 1.15022 1.06385 1.20336 0.76464 0.88602 0.82673 1.90693 1.46978 1.19307 1.82292 1.23534 1.04058 1.02209 1.00616 1.85370 1.88457 1.17222 0.92347 1.22870 1.52360 0.98676 0.94397 0.90932 1.24993 0.94985 0.96408 0.97227 1.70017 1.45663 1.21134 1.13510 0.86171 0.78779 0.80959 0.79610 1.20276 1.20767 1.19694 0.91885 0.92124 0.92439 0.93352 0.88500 0.88548 0.88835 0.89972 0.90943 0.92688 0.90661 0.90948 0.89197 0.92636 0.76579 0.89239 0.89208 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.16 37.16 0.34 -0.92 16 2 C -0.10 -0.97 3.37 -88.76 -0.30 -1.27 16 3 H 0.09 0.84 7.74 -51.93 -0.40 0.44 16 4 C 0.04 0.44 5.32 -1.90 -0.01 0.43 16 5 N -0.50 -5.20 5.10 -222.32 -1.13 -6.33 16 6 C 0.04 0.38 2.39 -67.73 -0.16 0.22 16 7 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 8 C -0.13 -0.88 5.79 -25.10 -0.15 -1.02 16 9 C 0.11 0.58 7.35 -3.12 -0.02 0.56 16 10 N -0.63 -5.10 3.34 -180.22 -0.60 -5.70 16 11 C 0.10 0.60 10.96 59.85 0.66 1.25 16 12 C 0.53 5.80 7.63 -10.75 -0.08 5.72 16 13 O -0.52 -7.39 15.93 5.56 0.09 -7.30 16 14 C 0.03 0.29 5.48 -2.63 -0.01 0.28 16 15 C 0.14 1.67 2.89 -66.58 -0.19 1.48 16 16 H 0.10 1.31 7.31 -51.93 -0.38 0.93 16 17 N -0.73 -9.53 5.02 -52.49 -0.26 -9.80 16 18 C 0.53 9.61 7.85 -10.99 -0.09 9.52 16 19 O -0.52 -11.32 15.54 5.56 0.09 -11.23 16 20 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 21 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 22 C -0.53 -15.14 9.50 30.94 0.29 -14.85 16 23 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 26 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.05 0.47 7.74 -51.93 -0.40 0.07 16 34 H 0.10 1.11 7.11 -51.93 -0.37 0.74 16 35 H 0.10 0.74 7.93 -51.93 -0.41 0.33 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.55 7.94 -51.93 -0.41 0.14 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 1.09 7.90 -51.93 -0.41 0.68 16 43 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 44 H 0.40 4.28 8.36 -40.82 -0.34 3.94 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -35.90 394.04 -9.69 -45.60 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.71 Total: 1.08 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 0.40 Total: 0.56 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -1.26 Total: -47.12 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.17 Total: -18.53 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.90 -9.69 -45.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206095743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.714 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds