Wall clock time and date at job start Sat Apr 11 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99658 * 2 1 4 4 N 1.46500 * 109.47556 * 124.99969 * 3 2 1 5 5 C 1.34769 * 120.00395 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00279 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00220 * 179.97438 * 5 4 3 8 8 N 1.46897 * 109.47373 * 180.02562 * 7 5 4 9 9 C 1.46894 * 111.00360 * 180.02562 * 8 7 5 10 10 H 1.09003 * 110.80226 * 31.70877 * 9 8 7 11 11 C 1.54599 * 110.83390 * 268.56348 * 9 8 7 12 12 N 1.48119 * 103.42293 * 204.44229 * 11 9 8 13 13 C 1.34778 * 127.03481 * 219.28135 * 12 11 9 14 14 O 1.21278 * 119.99748 * 359.71296 * 13 12 11 15 15 C 1.50697 * 120.00209 * 179.71109 * 13 12 11 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31634 * 119.99756 * 0.27728 * 19 17 16 21 21 Si 1.86803 * 120.00005 * 180.27923 * 19 17 16 22 22 H 1.48496 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99999 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00046 * 21 19 17 25 25 C 1.47484 * 105.93175 * 39.02382 * 12 11 9 26 26 C 1.54005 * 107.08434 * 334.78035 * 25 12 11 27 27 H 1.08999 * 110.33029 * 120.30321 * 26 25 12 28 28 C 1.53008 * 110.32397 * 242.41381 * 26 25 12 29 29 H 1.08009 * 119.99533 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.00743 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.00374 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.47413 * 5.00077 * 3 2 1 33 33 H 1.08996 * 109.47307 * 245.00226 * 3 2 1 34 34 H 0.97002 * 119.99709 * 359.97438 * 4 3 2 35 35 H 1.09000 * 109.47142 * 60.00184 * 7 5 4 36 36 H 1.08998 * 109.47134 * 300.00091 * 7 5 4 37 37 H 1.00908 * 111.00264 * 303.95347 * 8 7 5 38 38 H 1.08994 * 110.61901 * 85.92782 * 11 9 8 39 39 H 1.09002 * 110.54574 * 322.92289 * 11 9 8 40 40 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 41 41 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 42 42 H 0.97000 * 119.99219 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.91480 * 94.13534 * 25 12 11 44 44 H 1.09002 * 109.91013 * 215.22436 * 25 12 11 45 45 H 1.09000 * 109.47017 * 58.54140 * 28 26 25 46 46 H 1.08996 * 109.46967 * 178.54384 * 28 26 25 47 47 H 1.09000 * 109.47155 * 298.54834 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3321 1.1314 5 6 3.7788 2.4088 1.3328 6 8 3.7150 3.3557 0.5777 7 6 4.7354 2.4367 2.4970 8 7 5.4699 3.7088 2.4969 9 6 6.4143 3.7716 3.6203 10 1 6.7929 2.7788 3.8636 11 6 5.7536 4.4197 4.8586 12 7 6.9050 4.9515 5.6238 13 6 7.0653 4.9399 6.9620 14 8 6.2066 4.4601 7.6714 15 6 8.3116 5.5229 7.5767 16 16 8.2304 5.3575 9.3772 17 6 9.7666 6.0970 9.8219 18 1 10.4236 6.4801 9.0551 19 6 10.1296 6.1930 11.1582 20 7 9.3286 5.7265 12.0929 21 14 11.7547 6.9840 11.6302 22 1 12.4661 7.4236 10.4031 23 1 11.4988 8.1584 12.5022 24 1 12.5914 5.9983 12.3605 25 6 7.8430 5.4906 4.6215 26 6 7.5783 4.7388 3.3037 27 1 7.2885 5.4388 2.5200 28 6 8.8216 3.9538 2.8807 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 3.0446 0.5749 1.7356 35 1 5.4401 1.6099 2.4082 36 1 4.1772 2.3399 3.4282 37 1 5.9440 3.8527 1.6179 38 1 5.2162 3.6724 5.4422 39 1 5.0861 5.2271 4.5575 40 1 8.3885 6.5774 7.3114 41 1 9.1852 4.9894 7.2021 42 1 9.5825 5.7933 13.0267 43 1 7.6653 6.5571 4.4825 44 1 8.8699 5.3248 4.9471 45 1 9.0924 3.2503 3.6680 46 1 8.6109 3.4072 1.9616 47 1 9.6474 4.6448 2.7114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214167448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:54 Heat of formation + Delta-G solvation = -72.204340 kcal Electronic energy + Delta-G solvation = -26345.309155 eV Core-core repulsion = 22460.709747 eV Total energy + Delta-G solvation = -3884.599408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25203 -40.66447 -39.06363 -36.85783 -35.81795 -34.58714 -33.80442 -33.39508 -31.59292 -29.68954 -27.94608 -27.59549 -27.26330 -25.82631 -23.22585 -21.75030 -21.35821 -20.87793 -20.62848 -19.62433 -18.20721 -17.88472 -17.65063 -17.18472 -16.95777 -16.88607 -16.62284 -16.09356 -15.70945 -15.64302 -15.54289 -15.01718 -14.65154 -14.55084 -14.39308 -14.23336 -14.09186 -13.93075 -13.67934 -13.49594 -13.26438 -13.17741 -12.96633 -12.91505 -12.79594 -12.58918 -12.08588 -12.05926 -11.95570 -11.71978 -11.61627 -11.15830 -11.08284 -10.96774 -10.50408 -10.28417 -10.05818 -9.81402 -9.46201 -8.68110 -8.34872 -6.13468 1.15736 1.23102 1.41845 1.44523 1.54714 1.57020 1.62378 2.01118 2.26751 2.29637 2.99488 3.18235 3.20802 3.43168 3.58263 3.79270 3.87393 3.90886 3.93291 4.15119 4.23043 4.27754 4.28290 4.40789 4.43215 4.45376 4.52603 4.56266 4.65312 4.74450 4.76412 4.87215 4.88231 4.99145 5.00576 5.10290 5.27288 5.35469 5.37370 5.42056 5.63915 5.76872 5.88955 6.20018 6.28347 6.42016 6.56539 7.06440 7.09223 7.24492 8.74720 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.001731 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.936706 B =16168.300603 C =16983.832974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.181 4.181 3 C 0.146 3.854 4 N -0.719 5.719 5 C 0.512 3.488 6 O -0.571 6.571 7 C 0.041 3.959 8 N -0.669 5.669 9 C 0.091 3.909 10 H 0.071 0.929 11 C 0.112 3.888 12 N -0.619 5.619 13 C 0.551 3.449 14 O -0.567 6.567 15 C -0.119 4.119 16 S -0.150 6.150 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.098 3.902 26 C -0.097 4.097 27 H 0.109 0.891 28 C -0.143 4.143 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.416 0.584 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.359 0.641 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 -11.060 -29.237 32.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.199 4.199 3 C 0.023 3.977 4 N -0.372 5.372 5 C 0.299 3.701 6 O -0.449 6.449 7 C -0.091 4.091 8 N -0.304 5.304 9 C -0.020 4.020 10 H 0.088 0.912 11 C -0.011 4.011 12 N -0.354 5.354 13 C 0.339 3.661 14 O -0.446 6.446 15 C -0.271 4.271 16 S 0.077 5.923 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.025 4.025 26 C -0.116 4.116 27 H 0.127 0.873 28 C -0.200 4.200 29 H 0.136 0.864 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.180 0.820 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.191 -10.773 -28.163 31.829 hybrid contribution 2.070 0.073 -0.082 2.073 sum -8.121 -10.700 -28.246 31.277 Atomic orbital electron populations 1.24178 0.95864 1.03140 0.96945 1.22964 0.96290 0.97554 1.03073 1.20379 0.91576 0.96349 0.89382 1.45917 1.40325 1.19991 1.31000 1.20923 0.81269 0.81836 0.86108 1.90711 1.69215 1.36486 1.48535 1.21940 0.96773 0.92866 0.97480 1.59959 1.30535 1.33370 1.06491 1.22459 0.90883 0.98472 0.90140 0.91159 1.22439 0.88650 0.98673 0.91339 1.48643 1.22586 1.60264 1.03919 1.19732 0.87235 0.78226 0.80883 1.90683 1.45173 1.47608 1.61133 1.23294 0.98764 1.04683 1.00310 1.85582 1.28848 1.79897 0.97926 1.23228 1.05046 1.45270 0.95789 0.89895 1.26132 1.02173 0.95620 0.95134 1.70194 1.38532 1.44869 1.01172 0.84894 0.76571 0.77773 0.78638 1.17970 1.19966 1.19851 1.22479 0.93984 0.98842 0.87150 1.22244 0.95336 0.97425 0.96577 0.87319 1.21878 0.96372 1.00187 1.01569 0.86357 0.88454 0.85111 0.92452 0.91411 0.74704 0.89274 0.87197 0.82007 0.91673 0.90343 0.87703 0.87398 0.91972 0.90101 0.89688 0.93077 0.91090 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 14.32 67.78 0.97 -0.08 16 2 C -0.18 -1.23 9.63 25.64 0.25 -0.98 16 3 C 0.15 1.66 6.11 85.63 0.52 2.18 16 4 N -0.72 -7.61 5.55 -466.79 -2.59 -10.20 16 5 C 0.51 8.22 7.87 87.66 0.69 8.91 16 6 O -0.57 -14.24 16.20 -3.05 -0.05 -14.29 16 7 C 0.04 0.50 6.03 85.56 0.52 1.01 16 8 N -0.67 -10.22 5.98 -489.95 -2.93 -13.15 16 9 C 0.09 1.48 2.93 46.01 0.13 1.62 16 10 H 0.07 1.10 7.55 -2.39 -0.02 1.08 16 11 C 0.11 2.71 6.75 86.61 0.58 3.30 16 12 N -0.62 -17.65 3.29 -810.07 -2.67 -20.31 16 13 C 0.55 21.74 7.91 87.66 0.69 22.43 16 14 O -0.57 -27.60 16.07 -3.02 -0.05 -27.65 16 15 C -0.12 -4.92 5.23 71.23 0.37 -4.55 16 16 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 17 C -0.55 -31.32 9.50 67.96 0.65 -30.68 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 21 Si 1.00 43.59 29.55 68.60 2.03 45.61 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 C 0.10 1.92 6.42 86.53 0.56 2.48 16 26 C -0.10 -1.35 3.08 -9.90 -0.03 -1.38 16 27 H 0.11 1.31 7.94 -2.39 -0.02 1.30 16 28 C -0.14 -1.59 8.90 71.98 0.64 -0.95 16 29 H 0.12 0.43 8.06 -2.91 -0.02 0.40 16 30 H 0.10 0.68 7.84 -2.91 -0.02 0.66 16 31 H 0.13 0.50 8.06 -2.91 -0.02 0.47 16 32 H 0.06 0.82 7.79 -2.38 -0.02 0.80 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.42 2.04 8.46 -92.71 -0.78 1.25 16 35 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.36 5.14 8.03 -89.69 -0.72 4.42 16 38 H 0.06 1.78 7.85 -2.39 -0.02 1.76 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 41 H 0.11 4.00 7.91 -2.39 -0.02 3.98 16 42 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.08 1.60 7.08 -2.39 -0.02 1.58 16 45 H 0.05 0.69 8.13 -2.39 -0.02 0.67 16 46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -82.89 407.84 -0.66 -83.55 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.53 Total: 17.31 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 7.01 Total: 4.58 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -7.90 Total: -99.51 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.10 Total: -41.94 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -82.89 -0.66 -83.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214167448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.346 kcal (2) G-P(sol) polarization free energy of solvation -82.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds