Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.91486 * 2 1 4 4 C 1.54914 * 110.99945 * 236.10474 * 2 1 3 5 5 N 1.47434 * 104.82853 * 204.91475 * 4 2 1 6 6 C 1.34776 * 125.64482 * 204.16458 * 5 4 2 7 7 O 1.21279 * 119.99363 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.00110 * 359.95766 * 6 5 4 9 9 S 1.80997 * 109.46848 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99937 * 180.02562 * 9 8 6 11 11 H 1.07996 * 119.99732 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99998 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99971 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00034 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46877 * 60.00115 * 14 12 10 16 16 H 1.48498 * 109.47443 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47224 * 300.00339 * 14 12 10 18 18 C 1.47021 * 108.70187 * 24.12471 * 5 4 2 19 19 C 1.54326 * 107.27262 * 358.94357 * 18 5 4 20 20 H 1.09005 * 110.71494 * 96.34601 * 19 18 5 21 21 N 1.46901 * 110.71669 * 219.43840 * 19 18 5 22 22 C 1.46899 * 111.00145 * 273.54256 * 21 19 18 23 23 C 1.50693 * 109.47037 * 180.02562 * 22 21 19 24 24 O 1.21284 * 120.00241 * 0.02562 * 23 22 21 25 25 N 1.34781 * 120.00201 * 180.02562 * 23 22 21 26 26 C 1.47579 * 134.49446 * 180.02562 * 25 23 22 27 27 C 1.53950 * 86.11621 * 204.65755 * 26 25 23 28 28 C 1.47925 * 134.49765 * 0.02608 * 25 23 22 29 29 H 1.08998 * 109.47103 * 296.09043 * 1 2 3 30 30 H 1.08990 * 109.47179 * 56.09383 * 1 2 3 31 31 H 1.09006 * 109.47036 * 176.09806 * 1 2 3 32 32 H 1.08997 * 110.37001 * 86.07933 * 4 2 1 33 33 H 1.09001 * 110.46188 * 323.79639 * 4 2 1 34 34 H 1.08996 * 109.47398 * 299.99667 * 8 6 5 35 35 H 1.09001 * 109.47199 * 60.00336 * 8 6 5 36 36 H 0.96998 * 119.99464 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.88314 * 239.52046 * 18 5 4 38 38 H 1.09000 * 109.87883 * 118.35724 * 18 5 4 39 39 H 1.00903 * 110.99354 * 149.59579 * 21 19 18 40 40 H 1.09003 * 109.46636 * 60.00264 * 22 21 19 41 41 H 1.09002 * 109.47688 * 300.00626 * 22 21 19 42 42 H 1.09003 * 113.77049 * 90.35821 * 26 25 23 43 43 H 1.08999 * 113.87175 * 318.96854 * 26 25 23 44 44 H 1.09002 * 113.74276 * 90.74001 * 27 26 25 45 45 H 1.09006 * 113.73879 * 221.94144 * 27 26 25 46 46 H 1.09006 * 113.87423 * 41.08470 * 28 25 23 47 47 H 1.08997 * 113.77410 * 269.58641 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2005 5 7 3.4272 -1.2430 -0.7735 6 6 4.4480 -1.5602 -1.5943 7 8 5.5134 -1.9078 -1.1306 8 6 4.2656 -1.4831 -3.0883 9 16 5.8042 -1.9670 -3.9096 10 6 5.3203 -1.7900 -5.5946 11 1 4.3195 -1.4649 -5.8377 12 6 6.2256 -2.0674 -6.6095 13 7 7.4456 -2.4632 -6.3132 14 14 5.7124 -1.8804 -8.3958 15 1 5.3082 -0.4743 -8.6501 16 1 6.8532 -2.2343 -9.2783 17 1 4.5680 -2.7834 -8.6792 18 6 3.4675 -1.2741 0.6958 19 6 2.0862 -0.8080 1.2021 20 1 1.4480 -1.6634 1.4237 21 7 2.2292 0.0517 2.3847 22 6 2.2898 -0.7500 3.6141 23 6 2.4355 0.1642 4.8032 24 8 2.4837 1.3654 4.6424 25 7 2.5123 -0.3529 6.0455 26 6 2.6537 0.2209 7.3978 27 6 3.2617 -1.1362 7.7962 28 6 2.4888 -1.7236 6.6012 29 1 -0.3633 0.4519 0.9229 30 1 -0.3633 0.5732 -0.8528 31 1 -0.3633 -1.0253 -0.0699 32 1 2.1559 -0.1719 -2.0838 33 1 1.4524 -1.6703 -1.4045 34 1 3.4647 -2.1572 -3.3918 35 1 4.0081 -0.4623 -3.3707 36 1 8.0783 -2.6567 -7.0225 37 1 4.2427 -0.5998 1.0597 38 1 3.6651 -2.2894 1.0397 39 1 1.4831 0.7294 2.4313 40 1 3.1451 -1.4240 3.5665 41 1 1.3736 -1.3321 3.7139 42 1 1.7029 0.4364 7.8852 43 1 3.3580 1.0510 7.4533 44 1 4.3449 -1.1818 7.6839 45 1 2.9189 -1.5035 8.7636 46 1 3.0620 -2.4455 6.0193 47 1 1.4898 -2.0777 6.8553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214167482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -24.188159 kcal Electronic energy + Delta-G solvation = -26737.687690 eV Core-core repulsion = 22855.170419 eV Total energy + Delta-G solvation = -3882.517270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60866 -39.97150 -38.29315 -37.61066 -34.94373 -32.63615 -32.40305 -30.79801 -30.05137 -28.15496 -26.84531 -26.48075 -25.77522 -25.37123 -22.60850 -21.82975 -20.68901 -19.46883 -19.23268 -17.78040 -17.50143 -16.97011 -16.69010 -16.38190 -16.31147 -15.42327 -15.13856 -14.79784 -14.75654 -14.51125 -14.16454 -13.80806 -13.73585 -13.44434 -13.25551 -13.23569 -13.01951 -12.87859 -12.62937 -12.49714 -12.32900 -12.18878 -12.00266 -11.69838 -11.53767 -11.39972 -11.32945 -11.02165 -11.01745 -10.82775 -10.74804 -10.08091 -9.80221 -9.37417 -9.17564 -9.03687 -8.86991 -8.45070 -8.20709 -6.47514 -6.19103 -3.89678 2.22031 2.31770 2.91390 3.11534 3.25090 3.26928 3.30615 3.57860 3.72957 3.86155 4.02609 4.14200 4.22698 4.35459 4.42533 4.55870 4.66168 4.80264 4.83274 4.86143 4.91942 4.97992 5.09795 5.11221 5.13851 5.15728 5.18565 5.20073 5.29151 5.33474 5.50483 5.56131 5.58259 5.63151 5.67399 5.78254 5.90083 5.93120 6.00203 6.16619 6.46050 6.57089 6.93183 7.23658 7.61403 7.71568 7.81106 8.37356 8.60915 9.25826 10.88285 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.001872 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.139766 B =14953.775383 C =15782.021504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.098 0.902 4 C 0.108 3.892 5 N -0.625 5.625 6 C 0.548 3.452 7 O -0.515 6.515 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.118 3.882 19 C 0.080 3.920 20 H 0.064 0.936 21 N -0.661 5.661 22 C 0.047 3.953 23 C 0.535 3.465 24 O -0.524 6.524 25 N -0.652 5.652 26 C 0.107 3.893 27 C -0.154 4.154 28 C 0.099 3.901 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.355 0.645 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.054 1.585 27.126 32.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.116 0.884 4 C -0.016 4.016 5 N -0.362 5.362 6 C 0.337 3.663 7 O -0.389 6.389 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.006 4.006 19 C -0.030 4.030 20 H 0.081 0.919 21 N -0.295 5.295 22 C -0.086 4.086 23 C 0.324 3.676 24 O -0.399 6.399 25 N -0.391 5.391 26 C -0.016 4.016 27 C -0.191 4.191 28 C -0.024 4.024 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.175 0.825 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.508 1.784 27.313 31.459 hybrid contribution -2.572 0.160 -1.557 3.011 sum -18.081 1.945 25.756 31.529 Atomic orbital electron populations 1.21744 0.93652 1.02338 1.02370 1.22540 0.95945 1.00481 0.93616 0.88375 1.22329 0.83676 0.98113 0.97505 1.48403 1.12490 1.69270 1.06079 1.20019 0.82220 0.76045 0.88021 1.90708 1.25363 1.45666 1.77158 1.23504 1.07765 1.05059 0.93353 1.85406 1.09118 1.87682 1.01154 1.22822 1.01323 1.53063 0.91154 0.90987 1.24991 0.94501 0.94559 0.99523 1.70012 1.04293 1.42480 1.33490 0.86225 0.78157 0.78745 0.82367 1.19941 1.20812 1.19957 1.21840 0.97091 1.01073 0.80592 1.22629 0.95890 0.94766 0.89759 0.91859 1.60037 1.53520 1.16304 0.99649 1.21794 1.02819 0.95272 0.88676 1.20317 0.75726 0.88958 0.82617 1.90737 1.49037 1.15438 1.84648 1.50190 1.74070 1.09871 1.04934 1.23112 1.00542 0.97725 0.80187 1.23518 1.01366 0.95751 0.98509 1.23311 1.00575 0.85584 0.92934 0.92402 0.91588 0.92222 0.90008 0.91239 0.89335 0.89281 0.92142 0.90201 0.92003 0.82456 0.87836 0.92238 0.89842 0.89977 0.88741 0.89523 0.89673 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.31 37.16 0.35 -0.57 16 2 C -0.11 -0.94 3.07 -88.47 -0.27 -1.21 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.11 1.20 6.16 -2.52 -0.02 1.18 16 5 N -0.62 -9.50 3.33 -170.51 -0.57 -10.07 16 6 C 0.55 11.06 7.87 -10.99 -0.09 10.97 16 7 O -0.51 -12.45 16.19 5.56 0.09 -12.36 16 8 C -0.15 -3.09 5.16 36.01 0.19 -2.90 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.54 -15.45 9.50 30.94 0.29 -15.15 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 14 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.12 1.54 6.55 -3.06 -0.02 1.52 16 19 C 0.08 0.74 2.71 -65.88 -0.18 0.56 16 20 H 0.06 0.49 7.80 -51.93 -0.40 0.09 16 21 N -0.66 -6.35 5.92 -106.06 -0.63 -6.97 16 22 C 0.05 0.37 5.77 -4.98 -0.03 0.34 16 23 C 0.53 5.45 8.09 -10.99 -0.09 5.36 16 24 O -0.52 -7.57 16.93 5.55 0.09 -7.48 16 25 N -0.65 -4.74 3.62 -178.42 -0.65 -5.38 16 26 C 0.11 0.57 8.83 -2.97 -0.03 0.54 16 27 C -0.15 -0.45 8.28 -25.79 -0.21 -0.66 16 28 C 0.10 0.34 8.64 -2.76 -0.02 0.32 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.08 0.91 7.47 -51.93 -0.39 0.52 16 33 H 0.07 0.69 7.99 -51.93 -0.41 0.27 16 34 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 35 H 0.09 1.75 7.85 -51.92 -0.41 1.34 16 36 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.35 3.30 8.20 -39.29 -0.32 2.97 16 40 H 0.10 0.79 8.13 -51.93 -0.42 0.36 16 41 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -38.38 403.38 -10.11 -48.49 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.81 Total: -1.59 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.22 Total: 2.32 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -1.11 Total: -48.13 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.18 Total: -19.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.38 -10.11 -48.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214167482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.301 kcal (2) G-P(sol) polarization free energy of solvation -38.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds