Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.91486 * 2 1 4 4 C 1.54914 * 110.99945 * 236.10474 * 2 1 3 5 5 N 1.47434 * 104.82853 * 204.91475 * 4 2 1 6 6 C 1.34776 * 125.64482 * 204.16458 * 5 4 2 7 7 O 1.21279 * 119.99363 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.00110 * 359.95766 * 6 5 4 9 9 S 1.80997 * 109.46848 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99937 * 180.02562 * 9 8 6 11 11 H 1.07996 * 119.99732 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99998 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99971 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00034 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46877 * 60.00115 * 14 12 10 16 16 H 1.48498 * 109.47443 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47224 * 300.00339 * 14 12 10 18 18 C 1.47021 * 108.70187 * 24.12471 * 5 4 2 19 19 C 1.54326 * 107.27262 * 358.94357 * 18 5 4 20 20 H 1.09005 * 110.71494 * 96.34601 * 19 18 5 21 21 N 1.46901 * 110.71669 * 219.43840 * 19 18 5 22 22 C 1.46899 * 111.00145 * 273.54256 * 21 19 18 23 23 C 1.50693 * 109.47037 * 180.02562 * 22 21 19 24 24 O 1.21284 * 120.00241 * 0.02562 * 23 22 21 25 25 N 1.34781 * 120.00201 * 180.02562 * 23 22 21 26 26 C 1.47579 * 134.49446 * 180.02562 * 25 23 22 27 27 C 1.53950 * 86.11621 * 204.65755 * 26 25 23 28 28 C 1.47925 * 134.49765 * 0.02608 * 25 23 22 29 29 H 1.08998 * 109.47103 * 296.09043 * 1 2 3 30 30 H 1.08990 * 109.47179 * 56.09383 * 1 2 3 31 31 H 1.09006 * 109.47036 * 176.09806 * 1 2 3 32 32 H 1.08997 * 110.37001 * 86.07933 * 4 2 1 33 33 H 1.09001 * 110.46188 * 323.79639 * 4 2 1 34 34 H 1.08996 * 109.47398 * 299.99667 * 8 6 5 35 35 H 1.09001 * 109.47199 * 60.00336 * 8 6 5 36 36 H 0.96998 * 119.99464 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.88314 * 239.52046 * 18 5 4 38 38 H 1.09000 * 109.87883 * 118.35724 * 18 5 4 39 39 H 1.00903 * 110.99354 * 149.59579 * 21 19 18 40 40 H 1.09003 * 109.46636 * 60.00264 * 22 21 19 41 41 H 1.09002 * 109.47688 * 300.00626 * 22 21 19 42 42 H 1.09003 * 113.77049 * 90.35821 * 26 25 23 43 43 H 1.08999 * 113.87175 * 318.96854 * 26 25 23 44 44 H 1.09002 * 113.74276 * 90.74001 * 27 26 25 45 45 H 1.09006 * 113.73879 * 221.94144 * 27 26 25 46 46 H 1.09006 * 113.87423 * 41.08470 * 28 25 23 47 47 H 1.08997 * 113.77410 * 269.58641 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2005 5 7 3.4272 -1.2430 -0.7735 6 6 4.4480 -1.5602 -1.5943 7 8 5.5134 -1.9078 -1.1306 8 6 4.2656 -1.4831 -3.0883 9 16 5.8042 -1.9670 -3.9096 10 6 5.3203 -1.7900 -5.5946 11 1 4.3195 -1.4649 -5.8377 12 6 6.2256 -2.0674 -6.6095 13 7 7.4456 -2.4632 -6.3132 14 14 5.7124 -1.8804 -8.3958 15 1 5.3082 -0.4743 -8.6501 16 1 6.8532 -2.2343 -9.2783 17 1 4.5680 -2.7834 -8.6792 18 6 3.4675 -1.2741 0.6958 19 6 2.0862 -0.8080 1.2021 20 1 1.4480 -1.6634 1.4237 21 7 2.2292 0.0517 2.3847 22 6 2.2898 -0.7500 3.6141 23 6 2.4355 0.1642 4.8032 24 8 2.4837 1.3654 4.6424 25 7 2.5123 -0.3529 6.0455 26 6 2.6537 0.2209 7.3978 27 6 3.2617 -1.1362 7.7962 28 6 2.4888 -1.7236 6.6012 29 1 -0.3633 0.4519 0.9229 30 1 -0.3633 0.5732 -0.8528 31 1 -0.3633 -1.0253 -0.0699 32 1 2.1559 -0.1719 -2.0838 33 1 1.4524 -1.6703 -1.4045 34 1 3.4647 -2.1572 -3.3918 35 1 4.0081 -0.4623 -3.3707 36 1 8.0783 -2.6567 -7.0225 37 1 4.2427 -0.5998 1.0597 38 1 3.6651 -2.2894 1.0397 39 1 1.4831 0.7294 2.4313 40 1 3.1451 -1.4240 3.5665 41 1 1.3736 -1.3321 3.7139 42 1 1.7029 0.4364 7.8852 43 1 3.3580 1.0510 7.4533 44 1 4.3449 -1.1818 7.6839 45 1 2.9189 -1.5035 8.7636 46 1 3.0620 -2.4455 6.0193 47 1 1.4898 -2.0777 6.8553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214167482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = -52.907585 kcal Electronic energy + Delta-G solvation = -26738.933057 eV Core-core repulsion = 22855.170419 eV Total energy + Delta-G solvation = -3883.762638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.33845 -40.99205 -39.25984 -38.58023 -35.90382 -34.58971 -33.55544 -31.72146 -31.13126 -29.18526 -27.70800 -27.35003 -27.26008 -26.40281 -23.33805 -22.49838 -21.48025 -20.72889 -19.91140 -19.58977 -18.39351 -17.89208 -17.64408 -17.26870 -17.06882 -16.88367 -16.61383 -16.28030 -15.87874 -15.56577 -15.20078 -14.95548 -14.78976 -14.42732 -14.34905 -14.01364 -13.86353 -13.55841 -13.49751 -13.37399 -13.32936 -13.27902 -13.12824 -12.87236 -12.80211 -12.63337 -12.32719 -12.19530 -12.02589 -11.89238 -11.75875 -11.55834 -11.13002 -11.00030 -10.80284 -10.29561 -9.73980 -9.73332 -9.54336 -8.69045 -8.34591 -6.13863 1.22198 1.43868 1.44394 1.53742 1.54652 1.57705 1.74685 2.05124 2.27154 2.99315 3.01809 3.19217 3.35030 3.44721 3.51651 3.59343 3.84574 4.01174 4.13318 4.17324 4.19310 4.22816 4.27812 4.32049 4.40782 4.42073 4.50190 4.50799 4.61566 4.62665 4.66623 4.70668 4.78573 4.87662 4.91017 4.98570 4.99791 5.22219 5.27282 5.31629 5.39754 5.41076 5.87370 6.19357 6.23361 6.36744 6.67876 7.06011 7.08524 7.12163 8.74546 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.001872 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.139766 B =14953.775383 C =15782.021504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.097 3.903 5 N -0.616 5.616 6 C 0.545 3.455 7 O -0.568 6.568 8 C -0.118 4.118 9 S -0.152 6.152 10 C -0.547 4.547 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 1.000 3.000 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.260 1.260 18 C 0.113 3.887 19 C 0.097 3.903 20 H 0.092 0.908 21 N -0.680 5.680 22 C 0.052 3.948 23 C 0.524 3.476 24 O -0.582 6.582 25 N -0.658 5.658 26 C 0.094 3.906 27 C -0.140 4.140 28 C 0.100 3.900 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.358 0.642 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.657 0.834 27.483 35.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.025 4.025 5 N -0.350 5.350 6 C 0.333 3.667 7 O -0.447 6.447 8 C -0.269 4.269 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.185 1.185 18 C -0.010 4.010 19 C -0.013 4.013 20 H 0.110 0.890 21 N -0.315 5.315 22 C -0.080 4.080 23 C 0.315 3.685 24 O -0.462 6.462 25 N -0.395 5.395 26 C -0.028 4.028 27 C -0.178 4.178 28 C -0.021 4.021 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.179 0.821 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.132 0.868 46 H 0.112 0.888 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.179 1.014 27.737 33.737 hybrid contribution -1.498 0.411 -1.461 2.133 sum -20.676 1.425 26.276 33.466 Atomic orbital electron populations 1.21711 0.91030 1.03414 1.03213 1.22484 0.97830 0.99190 0.92097 0.89709 1.22733 0.81614 0.99483 0.98679 1.48339 1.12891 1.66981 1.06811 1.19831 0.82599 0.76259 0.88025 1.90683 1.27685 1.48561 1.77774 1.23292 1.03978 1.06108 0.93559 1.85613 1.15198 1.88562 1.03120 1.23162 1.01959 1.53193 0.91119 0.89805 1.26160 0.94298 0.93747 1.04981 1.70186 1.05762 1.43612 1.35218 0.84980 0.78093 0.79365 0.75402 1.18692 1.20368 1.18459 1.22011 0.99092 1.00753 0.79161 1.22503 0.93418 0.95648 0.89771 0.89026 1.59892 1.54149 1.17035 1.00377 1.21812 1.04309 0.94687 0.87147 1.20764 0.75187 0.88530 0.84062 1.90700 1.52052 1.17699 1.85700 1.50457 1.72231 1.12093 1.04720 1.23357 1.01248 0.98577 0.79647 1.23453 1.00888 0.93727 0.99718 1.23615 1.02176 0.83883 0.92466 0.91384 0.91056 0.90938 0.89786 0.88797 0.87206 0.87663 0.91968 0.92946 0.91836 0.82090 0.87644 0.89076 0.88283 0.91893 0.89409 0.86821 0.88791 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.31 71.98 0.67 -0.57 16 2 C -0.10 -1.47 3.07 -9.40 -0.03 -1.50 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.10 1.92 6.16 86.86 0.53 2.45 16 5 N -0.62 -18.26 3.33 -811.77 -2.70 -20.96 16 6 C 0.54 22.25 7.87 87.66 0.69 22.94 16 7 O -0.57 -28.68 16.19 -3.03 -0.05 -28.73 16 8 C -0.12 -4.98 5.16 71.24 0.37 -4.61 16 9 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 10 C -0.55 -31.71 9.50 67.95 0.65 -31.07 16 11 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 12 C 0.01 0.74 5.49 84.86 0.47 1.21 16 13 N -0.91 -56.77 13.22 21.65 0.29 -56.49 16 14 Si 1.00 43.94 29.55 68.60 2.03 45.96 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 18 C 0.11 2.91 6.55 86.73 0.57 3.48 16 19 C 0.10 1.57 2.71 46.10 0.12 1.70 16 20 H 0.09 1.05 7.80 -2.38 -0.02 1.03 16 21 N -0.68 -12.26 5.92 -489.46 -2.90 -15.16 16 22 C 0.05 0.75 5.77 85.55 0.49 1.24 16 23 C 0.52 10.53 8.09 87.65 0.71 11.24 16 24 O -0.58 -17.46 16.93 -3.04 -0.05 -17.51 16 25 N -0.66 -8.88 3.62 -836.78 -3.03 -11.91 16 26 C 0.09 0.93 8.83 86.49 0.76 1.69 16 27 C -0.14 -0.53 8.28 31.26 0.26 -0.27 16 28 C 0.10 0.42 8.64 86.43 0.75 1.17 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.52 8.08 -2.38 -0.02 0.50 16 32 H 0.08 1.66 7.47 -2.39 -0.02 1.64 16 33 H 0.09 1.49 7.99 -2.39 -0.02 1.47 16 34 H 0.11 4.12 8.14 -2.40 -0.02 4.11 16 35 H 0.11 4.06 7.85 -2.39 -0.02 4.04 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.05 1.65 8.03 -2.39 -0.02 1.63 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.36 6.22 8.20 -89.69 -0.74 5.49 16 40 H 0.11 1.46 8.13 -2.39 -0.02 1.44 16 41 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.11 -0.13 8.14 -2.38 -0.02 -0.15 16 46 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 47 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -89.07 403.38 -0.33 -89.41 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.23 Total: 16.17 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 7.01 Total: 9.11 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -8.34 Total: -104.52 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.10 Total: -46.24 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -89.07 -0.33 -89.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214167482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.499 kcal (2) G-P(sol) polarization free energy of solvation -89.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds