Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.91627 * 2 1 4 4 C 1.54906 * 111.00082 * 236.09925 * 2 1 3 5 5 N 1.47427 * 104.83315 * 204.91594 * 4 2 1 6 6 C 1.34771 * 125.64946 * 204.09269 * 5 4 2 7 7 O 1.21280 * 119.99971 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99980 * 0.04217 * 6 5 4 9 9 S 1.81005 * 109.47234 * 179.97438 * 8 6 5 10 10 C 1.76195 * 100.00363 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99337 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00468 * 179.97438 * 10 9 8 13 13 N 1.31625 * 120.00374 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99760 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.46913 * 89.99763 * 14 12 10 16 16 H 1.48496 * 109.47387 * 209.99920 * 14 12 10 17 17 H 1.48499 * 109.47088 * 330.00319 * 14 12 10 18 18 C 1.47025 * 108.70297 * 24.12980 * 5 4 2 19 19 C 1.54333 * 107.26907 * 358.93997 * 18 5 4 20 20 H 1.09003 * 110.71582 * 96.34617 * 19 18 5 21 21 N 1.46894 * 110.71764 * 219.44440 * 19 18 5 22 22 C 1.46897 * 111.00044 * 273.54565 * 21 19 18 23 23 H 1.08999 * 109.40195 * 324.82842 * 22 21 19 24 24 C 1.53070 * 109.40121 * 205.00150 * 22 21 19 25 25 C 1.53347 * 108.42283 * 191.05569 * 24 22 21 26 26 C 1.52915 * 108.67477 * 67.53571 * 25 24 22 27 27 N 1.45755 * 110.48805 * 309.24197 * 26 25 24 28 28 C 1.33362 * 124.10233 * 19.07670 * 27 26 25 29 29 O 1.21282 * 118.24236 * 177.75624 * 28 27 26 30 30 H 1.09001 * 109.46665 * 296.09683 * 1 2 3 31 31 H 1.08995 * 109.47005 * 56.09265 * 1 2 3 32 32 H 1.08994 * 109.47085 * 176.09723 * 1 2 3 33 33 H 1.09000 * 110.36705 * 86.07710 * 4 2 1 34 34 H 1.09005 * 110.46453 * 323.80159 * 4 2 1 35 35 H 1.09003 * 109.47177 * 299.99631 * 8 6 5 36 36 H 1.08997 * 109.47600 * 60.00049 * 8 6 5 37 37 H 0.97002 * 120.00043 * 180.02562 * 13 12 10 38 38 H 1.08992 * 109.88284 * 239.52743 * 18 5 4 39 39 H 1.09001 * 110.01104 * 118.42553 * 18 5 4 40 40 H 1.00897 * 111.00339 * 37.50175 * 21 19 18 41 41 H 1.09004 * 109.67084 * 71.32542 * 24 22 21 42 42 H 1.08997 * 109.67244 * 310.78961 * 24 22 21 43 43 H 1.09004 * 109.59985 * 187.28501 * 25 24 22 44 44 H 1.09001 * 109.60890 * 307.77519 * 25 24 22 45 45 H 1.08997 * 109.30705 * 69.55232 * 26 25 24 46 46 H 1.09006 * 109.29993 * 188.93492 * 26 25 24 47 47 H 0.96997 * 117.95339 * 199.07850 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5616 -1.5942 7 8 5.5127 -1.9100 -1.1304 8 6 4.2652 -1.4845 -3.0881 9 16 5.8037 -1.9690 -3.9095 10 6 5.3195 -1.7933 -5.5945 11 1 4.3186 -1.4683 -5.8375 12 6 6.2245 -2.0714 -6.6094 13 7 5.8629 -1.9396 -7.8681 14 14 7.9559 -2.6328 -6.1888 15 1 7.9864 -4.1145 -6.0939 16 1 8.8929 -2.1854 -7.2503 17 1 8.3645 -2.0450 -4.8878 18 6 3.4675 -1.2742 0.6959 19 6 2.0862 -0.8080 1.2022 20 1 1.4479 -1.6633 1.4238 21 7 2.2292 0.0518 2.3847 22 6 2.2898 -0.7498 3.6141 23 1 1.6410 -1.6197 3.5116 24 6 1.8192 0.0987 4.7981 25 6 2.1493 -0.6519 6.0938 26 6 3.6689 -0.7038 6.2561 27 7 4.2958 -1.1965 5.0359 28 6 3.7026 -1.2052 3.8415 29 8 4.3384 -1.6019 2.8879 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3633 -1.0252 -0.0699 33 1 2.1559 -0.1720 -2.0837 34 1 1.4524 -1.6704 -1.4044 35 1 3.4634 -2.1576 -3.3915 36 1 4.0090 -0.4635 -3.3707 37 1 6.4954 -2.1344 -8.5773 38 1 4.2426 -0.5999 1.0598 39 1 3.6662 -2.2885 1.0422 40 1 3.0384 0.6488 2.3020 41 1 0.7430 0.2582 4.7304 42 1 2.3344 1.0592 4.7889 43 1 1.7087 -0.1282 6.9422 44 1 1.7524 -1.6657 6.0406 45 1 4.0424 0.2967 6.4742 46 1 3.9205 -1.3673 7.0836 47 1 5.2010 -1.5396 5.0964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214169856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = -64.358796 kcal Electronic energy + Delta-G solvation = -27925.457928 eV Core-core repulsion = 24041.198728 eV Total energy + Delta-G solvation = -3884.259200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08237 -39.71545 -37.70598 -36.91898 -35.30719 -32.82232 -32.38225 -31.91249 -30.31019 -29.02183 -26.72373 -26.31139 -25.53471 -24.31826 -23.20593 -22.22563 -20.80904 -19.56850 -19.31206 -17.76811 -17.57787 -17.05739 -16.59813 -16.20113 -15.82956 -15.44669 -15.10976 -14.93297 -14.80326 -14.57738 -14.12326 -13.98434 -13.77166 -13.66966 -13.49861 -13.19699 -12.76559 -12.75937 -12.41025 -12.33046 -12.20093 -11.98674 -11.71888 -11.69638 -11.62994 -11.39626 -11.20313 -11.08443 -10.95613 -10.74616 -10.51201 -10.10108 -9.80041 -9.49244 -9.37198 -8.94742 -8.88180 -8.41583 -8.33129 -6.84728 -6.23574 -3.94310 2.20800 2.78788 2.87228 3.13544 3.29918 3.38223 3.56340 3.59025 3.73443 4.06191 4.17011 4.24466 4.35345 4.38169 4.39291 4.49744 4.70350 4.80418 4.84989 4.88920 5.01849 5.12326 5.15278 5.15559 5.22005 5.25642 5.34852 5.36814 5.47775 5.48257 5.59360 5.66657 5.74132 5.81926 5.91154 5.96934 6.08310 6.11005 6.20555 6.37051 6.53283 6.58443 6.77751 6.93886 7.78283 7.86018 7.99681 8.47014 8.63957 9.22976 10.85632 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.002421 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.236972 B =11561.070350 C =12782.805649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.088 0.912 4 C 0.100 3.900 5 N -0.627 5.627 6 C 0.544 3.456 7 O -0.517 6.517 8 C -0.116 4.116 9 S -0.144 6.144 10 C -0.519 4.519 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.881 5.881 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.235 1.235 18 C 0.104 3.896 19 C 0.079 3.921 20 H 0.093 0.907 21 N -0.647 5.647 22 C 0.075 3.925 23 H 0.110 0.890 24 C -0.110 4.110 25 C -0.138 4.138 26 C 0.108 3.892 27 N -0.719 5.719 28 C 0.478 3.522 29 O -0.534 6.534 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.270 0.730 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.349 0.651 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.451 5.808 31.596 35.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.106 0.894 4 C -0.023 4.023 5 N -0.365 5.365 6 C 0.331 3.669 7 O -0.391 6.391 8 C -0.267 4.267 9 S 0.082 5.918 10 C -0.666 4.666 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.518 5.518 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 C -0.020 4.020 19 C -0.031 4.031 20 H 0.111 0.889 21 N -0.277 5.277 22 C -0.039 4.039 23 H 0.128 0.872 24 C -0.148 4.148 25 C -0.176 4.176 26 C -0.017 4.017 27 N -0.372 5.372 28 C 0.263 3.737 29 O -0.410 6.410 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.169 0.831 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -13.329 5.271 31.573 34.675 hybrid contribution 0.766 -0.379 -0.574 1.029 sum -12.563 4.892 30.999 33.804 Atomic orbital electron populations 1.21640 0.93396 1.01940 1.02309 1.22336 0.96414 0.99561 0.92864 0.89352 1.22443 0.83765 0.98312 0.97829 1.48561 1.12255 1.68771 1.06912 1.19946 0.82563 0.76448 0.87900 1.90709 1.25508 1.45746 1.77162 1.23255 1.04851 1.05413 0.93166 1.84798 1.14035 1.89130 1.03804 1.22322 1.03066 1.52782 0.88468 0.89410 1.24706 0.98776 0.93812 0.94042 1.69941 1.36071 1.47099 0.98714 0.86735 0.84142 0.80452 0.80537 1.19236 1.19987 1.15909 1.22800 0.96836 1.03232 0.79089 1.22835 0.95708 0.94940 0.89655 0.88914 1.60931 1.46576 1.19931 1.00216 1.21722 0.92016 0.97837 0.92308 0.87220 1.21642 1.02931 0.98709 0.91530 1.21904 0.94718 1.02044 0.98951 1.21407 0.93817 0.99878 0.86561 1.45619 1.19054 1.64443 1.08124 1.21476 0.91062 0.78400 0.82780 1.90934 1.64957 1.46533 1.38592 0.91637 0.92328 0.92648 0.90200 0.91279 0.88722 0.88690 0.92008 0.91086 0.90654 0.83130 0.89749 0.90779 0.89366 0.90836 0.91588 0.90569 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.31 37.16 0.35 -0.62 16 2 C -0.09 -0.85 3.33 -88.47 -0.29 -1.15 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.10 1.19 6.16 -2.53 -0.02 1.18 16 5 N -0.63 -10.15 3.33 -170.52 -0.57 -10.71 16 6 C 0.54 11.34 7.87 -10.99 -0.09 11.26 16 7 O -0.52 -12.92 16.19 5.56 0.09 -12.83 16 8 C -0.12 -2.49 5.16 36.01 0.19 -2.31 16 9 S -0.14 -3.89 18.55 -107.50 -1.99 -5.88 16 10 C -0.52 -15.49 10.04 30.94 0.31 -15.18 16 11 H 0.09 2.72 8.03 -52.48 -0.42 2.30 16 12 C 0.10 2.87 5.50 -17.43 -0.10 2.77 16 13 N -0.88 -27.21 13.97 55.49 0.78 -26.44 16 14 Si 0.86 22.57 27.74 -169.99 -4.72 17.85 16 15 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.24 -6.23 6.74 56.52 0.38 -5.85 16 18 C 0.10 1.52 4.45 -3.06 -0.01 1.51 16 19 C 0.08 0.78 2.68 -65.88 -0.18 0.60 16 20 H 0.09 0.85 7.43 -51.93 -0.39 0.47 16 21 N -0.65 -5.18 6.11 -99.27 -0.61 -5.79 16 22 C 0.07 0.51 2.74 -69.09 -0.19 0.32 16 23 H 0.11 0.71 7.48 -51.93 -0.39 0.32 16 24 C -0.11 -0.45 5.64 -26.52 -0.15 -0.60 16 25 C -0.14 -0.36 6.02 -26.60 -0.16 -0.52 16 26 C 0.11 0.35 7.17 -4.49 -0.03 0.32 16 27 N -0.72 -4.73 5.45 -61.39 -0.33 -5.06 16 28 C 0.48 4.43 7.18 -11.87 -0.09 4.35 16 29 O -0.53 -7.48 12.25 5.56 0.07 -7.41 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.08 0.94 7.48 -51.93 -0.39 0.55 16 34 H 0.07 0.76 7.99 -51.93 -0.41 0.34 16 35 H 0.09 1.90 8.14 -51.92 -0.42 1.48 16 36 H 0.09 1.90 7.85 -51.92 -0.41 1.49 16 37 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.07 1.18 6.37 -51.93 -0.33 0.85 16 39 H 0.08 1.29 6.91 -51.93 -0.36 0.93 16 40 H 0.35 3.15 7.89 -39.29 -0.31 2.84 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 43 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.07 0.21 8.12 -51.93 -0.42 -0.21 16 45 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 47 H 0.40 2.66 8.80 -40.82 -0.36 2.31 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -37.62 381.76 -9.55 -47.17 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.57 Total: 1.42 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.46 Total: 1.92 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.73 Total: -48.00 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.16 Total: -20.24 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.72 Total: 17.85 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -1.99 Total: -5.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.62 -9.55 -47.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214169856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.187 kcal (2) G-P(sol) polarization free energy of solvation -37.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds