Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.29519 * 2 1 4 4 C 1.54007 * 110.32356 * 237.86952 * 2 1 3 5 5 N 1.47485 * 107.08259 * 242.41583 * 4 2 1 6 6 C 1.34776 * 127.03701 * 154.51869 * 5 4 2 7 7 O 1.21280 * 120.00458 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99564 * 0.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.48118 * 105.93394 * 334.77735 * 5 4 2 19 19 C 1.54594 * 103.42214 * 39.02626 * 18 5 4 20 20 H 1.08997 * 110.57699 * 81.16665 * 19 18 5 21 21 N 1.46902 * 110.99174 * 204.37655 * 19 18 5 22 22 C 1.46900 * 110.99588 * 268.65105 * 21 19 18 23 23 C 1.50702 * 109.47115 * 179.97438 * 22 21 19 24 24 O 1.21287 * 119.99564 * 359.97438 * 23 22 21 25 25 N 1.34776 * 120.00285 * 180.02562 * 23 22 21 26 26 C 1.46495 * 119.99968 * 180.02562 * 25 23 22 27 27 C 1.52999 * 117.49540 * 223.74663 * 26 25 23 28 28 C 1.53004 * 117.49834 * 155.08647 * 26 25 23 29 29 H 1.09003 * 109.47504 * 180.67794 * 1 2 3 30 30 H 1.08999 * 109.47151 * 300.67713 * 1 2 3 31 31 H 1.08997 * 109.47251 * 60.67712 * 1 2 3 32 32 H 1.08999 * 109.91552 * 123.05587 * 4 2 1 33 33 H 1.09005 * 110.07698 * 1.86075 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.09001 * 110.66327 * 157.50926 * 18 5 4 38 38 H 1.08997 * 110.66078 * 280.62480 * 18 5 4 39 39 H 1.00897 * 110.99523 * 32.60228 * 21 19 18 40 40 H 1.09002 * 109.46974 * 299.99681 * 22 21 19 41 41 H 1.09002 * 109.47588 * 59.99798 * 22 21 19 42 42 H 0.97000 * 119.99709 * 359.97438 * 25 23 22 43 43 H 1.09005 * 115.55267 * 9.40952 * 26 25 23 44 44 H 1.08998 * 117.50204 * 359.97438 * 27 26 25 45 45 H 1.09000 * 117.50088 * 145.01907 * 27 26 25 46 46 H 1.09000 * 117.49685 * 214.97310 * 28 26 25 47 47 H 1.09001 * 117.49963 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7681 -1.2230 5 7 2.8275 -1.9217 -0.7105 6 6 3.0611 -3.0873 -1.3456 7 8 3.7089 -3.9558 -0.8005 8 6 2.5175 -3.3113 -2.7332 9 16 2.9962 -4.9590 -3.3099 10 6 2.2502 -4.9530 -4.9062 11 1 1.7010 -4.0860 -5.2424 12 6 2.3685 -6.0626 -5.7316 13 7 3.0383 -7.1191 -5.3221 14 14 1.5783 -6.0561 -7.4242 15 1 0.8887 -4.7593 -7.6436 16 1 0.5917 -7.1623 -7.5143 17 1 2.6259 -6.2416 -8.4603 18 6 3.2788 -1.5399 0.6476 19 6 2.0671 -0.7737 1.2262 20 1 1.3174 -1.4701 1.6019 21 7 2.4879 0.1550 2.2837 22 6 2.4316 -0.4889 3.6029 23 6 2.8698 0.4919 4.6598 24 8 3.1973 1.6165 4.3450 25 7 2.8989 0.1191 5.9546 26 6 3.3243 1.0727 6.9821 27 6 4.2774 0.5649 8.0659 28 6 2.8127 0.8511 8.4069 29 1 -0.3634 -1.0276 0.0122 30 1 -0.3633 0.5243 0.8838 31 1 -0.3633 0.5033 -0.8960 32 1 2.7180 -0.1226 -1.8103 33 1 1.2353 -1.1156 -1.8388 34 1 2.9228 -2.5578 -3.4084 35 1 1.4303 -3.2352 -2.7141 36 1 3.4490 -7.1225 -4.4433 37 1 3.4934 -2.4260 1.2450 38 1 4.1523 -0.8901 0.5941 39 1 3.4102 0.5199 2.0985 40 1 1.4104 -0.8110 3.8066 41 1 3.0945 -1.3542 3.6135 42 1 2.6373 -0.7805 6.2063 43 1 3.4473 2.1023 6.6459 44 1 4.5875 -0.4787 8.0147 45 1 5.0270 1.2605 8.4431 46 1 2.5995 1.7349 9.0082 47 1 2.1593 -0.0040 8.5798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214170111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = -71.284834 kcal Electronic energy + Delta-G solvation = -26510.732760 eV Core-core repulsion = 22626.173225 eV Total energy + Delta-G solvation = -3884.559535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36322 -40.77818 -39.18056 -38.05210 -35.87945 -34.76221 -33.92941 -33.46712 -31.67072 -29.58610 -27.37022 -27.22202 -26.69775 -23.74429 -23.28914 -22.76041 -21.74196 -21.30852 -20.89995 -20.13166 -18.43419 -18.05355 -17.79968 -17.38525 -17.11380 -16.72337 -16.23055 -15.87873 -15.78568 -15.65516 -15.41342 -14.87778 -14.79664 -14.58823 -14.46726 -14.21438 -14.14813 -13.81581 -13.77183 -13.67093 -13.40788 -13.03308 -12.98236 -12.76493 -12.50643 -12.35093 -12.08718 -12.01747 -11.92997 -11.72011 -11.58027 -11.48408 -11.12616 -11.10069 -10.92172 -10.34635 -9.96991 -9.77104 -9.44282 -8.93947 -8.89644 -6.29620 1.10489 1.41524 1.51032 1.53567 1.61818 1.77870 1.85653 2.02376 2.32133 2.97023 3.01252 3.01457 3.11731 3.41673 3.53388 3.69292 3.79526 3.82974 3.86084 4.03322 4.05648 4.08656 4.16943 4.21195 4.30079 4.31576 4.40698 4.49255 4.65538 4.69877 4.75405 4.76034 4.81381 4.85823 5.01142 5.01758 5.12530 5.18993 5.28388 5.40853 5.49695 5.63881 5.84343 6.13740 6.18616 6.28531 6.51094 6.96079 7.04960 7.21442 8.49610 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.001758 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.838398 B =15919.849272 C =16639.226148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.104 0.896 4 C 0.094 3.906 5 N -0.614 5.614 6 C 0.550 3.450 7 O -0.567 6.567 8 C -0.100 4.100 9 S -0.194 6.194 10 C -0.613 4.613 11 H 0.075 0.925 12 C -0.018 4.018 13 N -0.913 5.913 14 Si 1.142 2.858 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.275 1.275 18 C 0.074 3.926 19 C 0.094 3.906 20 H 0.099 0.901 21 N -0.659 5.659 22 C 0.040 3.960 23 C 0.516 3.484 24 O -0.569 6.569 25 N -0.694 5.694 26 C 0.055 3.945 27 C -0.189 4.189 28 C -0.173 4.173 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.352 0.648 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.416 0.584 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 20.104 24.680 32.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.122 0.878 4 C -0.028 4.028 5 N -0.349 5.349 6 C 0.338 3.662 7 O -0.446 6.446 8 C -0.252 4.252 9 S 0.033 5.967 10 C -0.761 4.761 11 H 0.093 0.907 12 C -0.221 4.221 13 N -0.548 5.548 14 Si 0.960 3.040 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.200 1.200 18 C -0.050 4.050 19 C -0.017 4.017 20 H 0.117 0.883 21 N -0.291 5.291 22 C -0.092 4.092 23 C 0.303 3.697 24 O -0.447 6.447 25 N -0.345 5.345 26 C -0.051 4.051 27 C -0.227 4.227 28 C -0.212 4.212 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.098 0.902 42 H 0.253 0.747 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.129 0.871 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.933 18.960 23.949 30.941 hybrid contribution 0.567 0.602 0.853 1.188 sum -4.366 19.561 24.802 31.888 Atomic orbital electron populations 1.21779 0.92891 1.01803 1.02944 1.22023 0.97279 0.99877 0.91115 0.87795 1.22602 0.96086 0.86309 0.97842 1.48554 1.54063 1.14430 1.17860 1.19673 0.79241 0.80650 0.86587 1.90686 1.41676 1.44086 1.68148 1.23149 1.04984 1.01003 0.96037 1.85039 1.73201 1.18203 1.20241 1.24079 1.42264 1.07917 1.01814 0.90682 1.27836 0.95324 0.90565 1.08376 1.70862 1.32107 1.30728 1.21140 0.82652 0.75693 0.77070 0.68633 1.18676 1.19916 1.20010 1.23314 0.98789 0.99964 0.82954 1.22637 0.95218 0.92445 0.91441 0.88337 1.60300 1.34475 1.34497 0.99812 1.21959 1.04688 0.94631 0.87906 1.20920 0.76493 0.88497 0.83770 1.90705 1.49255 1.22772 1.82017 1.45283 1.67528 1.16278 1.05434 1.21595 1.04609 0.94578 0.84354 1.23500 0.93922 1.03308 1.01991 1.23466 0.96952 1.04834 0.95903 0.93226 0.91405 0.91420 0.89968 0.89845 0.87499 0.87241 0.92823 0.91192 0.90080 0.82810 0.85761 0.90242 0.74659 0.86589 0.87805 0.87619 0.87125 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.90 71.98 0.64 -1.16 16 2 C -0.08 -1.22 3.33 -9.90 -0.03 -1.25 16 3 H 0.10 1.41 8.05 -2.39 -0.02 1.39 16 4 C 0.09 1.78 6.42 86.53 0.56 2.34 16 5 N -0.61 -16.52 3.29 -810.07 -2.67 -19.19 16 6 C 0.55 21.01 7.91 87.66 0.69 21.70 16 7 O -0.57 -26.69 16.07 -3.03 -0.05 -26.74 16 8 C -0.10 -4.09 5.23 71.24 0.37 -3.71 16 9 S -0.19 -10.75 19.60 -56.49 -1.11 -11.86 16 10 C -0.61 -35.47 9.50 67.95 0.65 -34.83 16 11 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 12 C -0.02 -1.04 5.49 84.86 0.47 -0.57 16 13 N -0.91 -58.01 13.67 21.65 0.30 -57.71 16 14 Si 1.14 49.36 29.92 68.60 2.05 51.41 16 15 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C 0.07 1.57 6.66 86.61 0.58 2.14 16 19 C 0.09 1.43 2.92 46.01 0.13 1.57 16 20 H 0.10 1.48 7.54 -2.39 -0.02 1.46 16 21 N -0.66 -9.51 5.96 -489.92 -2.92 -12.43 16 22 C 0.04 0.44 6.03 85.56 0.52 0.96 16 23 C 0.52 8.05 7.87 87.66 0.69 8.74 16 24 O -0.57 -13.99 15.77 -3.05 -0.05 -14.04 16 25 N -0.69 -7.20 5.57 -442.53 -2.46 -9.67 16 26 C 0.05 0.62 6.43 44.99 0.29 0.91 16 27 C -0.19 -1.46 10.46 30.62 0.32 -1.14 16 28 C -0.17 -1.11 10.46 30.62 0.32 -0.79 16 29 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.57 7.08 -2.38 -0.02 1.55 16 34 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 35 H 0.11 4.05 7.91 -2.40 -0.02 4.03 16 36 H 0.26 17.25 7.13 -92.70 -0.66 16.59 16 37 H 0.07 1.68 7.85 -2.39 -0.02 1.66 16 38 H 0.08 1.56 7.78 -2.39 -0.02 1.54 16 39 H 0.35 5.55 7.92 -89.70 -0.71 4.84 16 40 H 0.12 0.93 8.08 -2.39 -0.02 0.91 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.42 1.84 8.83 -92.71 -0.82 1.02 16 43 H 0.12 1.85 7.40 -2.38 -0.02 1.83 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -83.39 403.54 -1.15 -84.54 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.43 Total: 20.77 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 6.19 Total: -5.10 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -7.75 Total: -98.99 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.10 Total: -40.77 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.41 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.11 Total: -11.86 kcal Total: -83.39 -1.15 -84.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214170111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.253 kcal (2) G-P(sol) polarization free energy of solvation -83.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds