Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00009 * 2 1 4 4 N 1.46497 * 109.47367 * 124.99775 * 3 2 1 5 5 C 1.34778 * 119.99797 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99972 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99898 * 180.27352 * 5 4 3 8 8 N 1.46894 * 109.47436 * 173.45699 * 7 5 4 9 9 C 1.46847 * 111.00301 * 169.40141 * 8 7 5 10 10 C 1.53039 * 109.52415 * 185.84283 * 9 8 7 11 11 C 1.53126 * 109.27449 * 300.81595 * 10 9 8 12 12 N 1.46503 * 109.57180 * 177.59087 * 11 10 9 13 13 C 1.34773 * 119.99700 * 85.28867 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99848 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47104 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99775 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00149 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99458 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99633 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00350 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47384 * 89.99884 * 21 19 17 23 23 H 1.48504 * 109.47005 * 209.99834 * 21 19 17 24 24 H 1.48502 * 109.46982 * 329.99438 * 21 19 17 25 25 C 1.53124 * 109.15864 * 57.65819 * 11 10 9 26 26 C 1.46847 * 111.00173 * 293.61382 * 8 7 5 27 27 H 1.08000 * 119.99651 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00407 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47039 * 4.99424 * 3 2 1 31 31 H 1.09005 * 109.46746 * 244.99904 * 3 2 1 32 32 H 0.97001 * 120.00008 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.47110 * 293.46059 * 7 5 4 34 34 H 1.08999 * 109.47358 * 53.45628 * 7 5 4 35 35 H 1.08996 * 109.45875 * 305.85218 * 9 8 7 36 36 H 1.08992 * 109.46460 * 65.82544 * 9 8 7 37 37 H 1.08994 * 109.50626 * 180.88030 * 10 9 8 38 38 H 1.08996 * 109.50629 * 60.75326 * 10 9 8 39 39 H 1.08995 * 109.52557 * 297.75041 * 11 10 9 40 40 H 0.97004 * 119.99988 * 265.28804 * 12 11 10 41 41 H 1.09003 * 109.47147 * 299.99952 * 15 13 12 42 42 H 1.08999 * 109.47058 * 59.99886 * 15 13 12 43 43 H 0.97000 * 120.00350 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.50017 * 182.40007 * 25 11 10 45 45 H 1.09002 * 109.50229 * 62.28469 * 25 11 10 46 46 H 1.09012 * 109.46038 * 294.17527 * 26 8 7 47 47 H 1.09002 * 109.46256 * 54.14936 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7789 2.4088 1.3328 6 8 3.7157 3.3553 0.5770 7 6 4.7402 2.4339 2.4930 8 7 5.5831 3.6337 2.4048 9 6 6.3550 3.8266 3.6390 10 6 7.1070 5.1577 3.5692 11 6 8.0422 5.1469 2.3567 12 7 8.7229 6.4398 2.2505 13 6 9.8531 6.6656 2.9491 14 8 10.3068 5.7984 3.6654 15 6 10.5537 7.9954 2.8394 16 16 12.0281 7.9890 3.8893 17 6 12.6328 9.6143 3.5774 18 1 12.1009 10.2681 2.9022 19 6 13.7923 10.0548 4.2006 20 7 14.2443 11.2689 3.9673 21 14 14.7119 8.9243 5.3691 22 1 15.7158 8.1372 4.6089 23 1 15.4004 9.7365 6.4043 24 1 13.7506 8.0005 6.0232 25 6 7.2195 4.8961 1.0898 26 6 6.4642 3.5728 1.2316 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.0445 0.5749 1.7356 33 1 4.1806 2.4510 3.4283 34 1 5.3698 1.5446 2.4626 35 1 5.6778 3.8366 4.4930 36 1 7.0695 3.0113 3.7517 37 1 7.6921 5.2933 4.4787 38 1 6.3924 5.9747 3.4703 39 1 8.7814 4.3545 2.4738 40 1 8.3602 7.1332 1.6773 41 1 10.8456 8.1679 1.8035 42 1 9.8804 8.7887 3.1641 43 1 15.0547 11.5766 4.4024 44 1 7.8850 4.8449 0.2281 45 1 6.5066 5.7091 0.9520 46 1 7.1783 2.7585 1.3555 47 1 5.8663 3.3984 0.3370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226145252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = -49.635878 kcal Electronic energy + Delta-G solvation = -26353.499875 eV Core-core repulsion = 22469.879109 eV Total energy + Delta-G solvation = -3883.620766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48966 -39.61656 -38.25380 -36.26506 -34.94953 -33.33576 -32.41934 -32.02438 -31.07837 -29.40031 -27.91380 -25.80569 -25.54952 -23.53006 -23.00929 -21.16550 -20.41026 -20.33609 -20.05725 -17.82938 -17.46613 -17.06577 -16.43005 -16.40028 -16.10697 -15.58585 -15.23670 -15.03348 -14.95906 -14.87797 -14.36831 -13.98559 -13.96495 -13.73214 -13.33256 -13.31169 -13.30268 -13.03042 -12.77528 -12.37956 -12.17291 -12.02478 -11.77854 -11.67044 -11.40128 -11.24447 -11.00796 -10.95550 -10.74480 -10.55729 -10.41408 -10.00690 -9.83407 -9.51564 -9.43947 -8.99119 -8.89505 -8.64426 -8.47558 -6.89160 -6.26871 -3.98277 1.44965 2.26419 2.73652 2.80261 3.01879 3.32901 3.36301 3.51890 3.59330 3.69789 4.15236 4.34728 4.35063 4.46680 4.56584 4.63789 4.71924 4.79041 4.84763 4.95669 4.98094 5.02231 5.12235 5.16504 5.18736 5.23904 5.27540 5.31481 5.45255 5.52531 5.66977 5.73720 5.81135 5.83966 5.87404 5.89711 6.03037 6.05903 6.07749 6.19938 6.57460 6.65134 6.74708 7.05322 7.69432 7.84331 7.96291 8.44151 8.54979 9.19385 10.82453 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.049352 B = 0.001572 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.221563 B =17812.792202 C =18109.880309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.734 5.734 5 C 0.512 3.488 6 O -0.516 6.516 7 C 0.037 3.963 8 N -0.521 5.521 9 C 0.061 3.939 10 C -0.127 4.127 11 C 0.146 3.854 12 N -0.732 5.732 13 C 0.532 3.468 14 O -0.522 6.522 15 C -0.125 4.125 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.120 4.120 26 C 0.058 3.942 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.401 0.599 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.400 0.600 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.270 0.730 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.032 0.968 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.419 -24.073 -6.646 37.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.388 5.388 5 C 0.297 3.703 6 O -0.390 6.390 7 C -0.094 4.094 8 N -0.246 5.246 9 C -0.067 4.067 10 C -0.166 4.166 11 C 0.041 3.959 12 N -0.385 5.385 13 C 0.318 3.682 14 O -0.396 6.396 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.158 4.158 26 C -0.070 4.070 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.235 0.765 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.050 0.950 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -26.845 -24.244 -6.036 36.672 hybrid contribution 0.330 -0.008 -0.265 0.423 sum -26.516 -24.252 -6.300 36.482 Atomic orbital electron populations 1.24011 0.95809 1.02535 0.97851 1.23004 0.96257 0.98086 1.02342 1.20385 0.91820 0.95554 0.89807 1.46012 1.41568 1.20168 1.31041 1.20642 0.81073 0.82094 0.86456 1.90723 1.67205 1.34695 1.46387 1.21936 0.95878 0.93624 0.98005 1.61617 1.23550 1.36013 1.03465 1.22087 0.95773 0.97465 0.91382 1.21984 0.98133 0.97260 0.99190 1.20947 0.93720 0.86534 0.94725 1.46032 1.26806 1.16605 1.49020 1.20281 0.79786 0.89192 0.78965 1.90684 1.64957 1.45887 1.38115 1.23290 1.01934 0.96813 1.05481 1.84755 1.25976 1.22227 1.58668 1.22332 1.13828 0.97553 1.33169 0.89395 1.24710 0.95970 0.94841 0.95752 1.69942 1.22628 1.16663 1.42521 0.86733 0.81759 0.81666 0.81677 1.19237 1.19957 1.15937 1.21817 0.98523 0.98414 0.97092 1.22135 0.94220 0.96508 0.94108 0.87823 0.88092 0.86682 0.91023 0.90663 0.76548 0.87574 0.91938 0.90276 0.94352 0.90434 0.90683 0.89836 0.76616 0.88537 0.88461 0.91967 0.90778 0.90200 0.94960 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 14.32 29.02 0.42 -0.10 16 2 C -0.18 -0.61 9.63 -36.02 -0.35 -0.96 16 3 C 0.15 0.79 6.11 -5.19 -0.03 0.76 16 4 N -0.73 -3.81 5.55 -61.47 -0.34 -4.15 16 5 C 0.51 4.16 7.36 -10.99 -0.08 4.08 16 6 O -0.52 -6.38 14.71 5.55 0.08 -6.30 16 7 C 0.04 0.24 5.45 -4.98 -0.03 0.21 16 8 N -0.52 -4.77 4.35 -236.12 -1.03 -5.80 16 9 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 10 C -0.13 -1.42 5.68 -26.65 -0.15 -1.57 16 11 C 0.15 1.73 2.52 -67.80 -0.17 1.56 16 12 N -0.73 -9.66 5.08 -53.68 -0.27 -9.94 16 13 C 0.53 9.53 7.82 -10.98 -0.09 9.45 16 14 O -0.52 -11.22 15.52 5.55 0.09 -11.13 16 15 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 16 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 17 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 18 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.79 13.97 55.49 0.78 -26.01 16 21 Si 0.86 21.94 27.74 -169.99 -4.71 17.23 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 25 C -0.12 -1.19 5.57 -26.65 -0.15 -1.34 16 26 C 0.06 0.55 5.12 -3.84 -0.02 0.53 16 27 H 0.10 0.21 8.06 -52.49 -0.42 -0.21 16 28 H 0.10 0.31 7.84 -52.49 -0.41 -0.10 16 29 H 0.12 0.28 8.06 -52.49 -0.42 -0.15 16 30 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 0.98 8.46 -40.82 -0.35 0.63 16 33 H 0.11 0.50 7.98 -51.93 -0.41 0.09 16 34 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 35 H 0.08 0.61 8.01 -51.93 -0.42 0.19 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.15 7.58 -51.93 -0.39 0.75 16 40 H 0.40 4.27 8.61 -40.82 -0.35 3.91 16 41 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 42 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 47 H 0.09 0.94 6.06 -51.93 -0.31 0.63 16 LS Contribution 399.32 15.07 6.02 6.02 Total: -1.00 -36.51 399.32 -9.32 -45.83 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.70 Total: 1.09 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.23 Total: -1.19 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.87 Total: -45.90 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.43 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.51 -9.32 -45.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226145252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.809 kcal (2) G-P(sol) polarization free energy of solvation -36.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds