Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00009 * 2 1 4 4 N 1.46497 * 109.47367 * 124.99775 * 3 2 1 5 5 C 1.34778 * 119.99797 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99972 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99898 * 180.27352 * 5 4 3 8 8 N 1.46894 * 109.47436 * 173.45699 * 7 5 4 9 9 C 1.46847 * 111.00301 * 169.40141 * 8 7 5 10 10 C 1.53039 * 109.52415 * 185.84283 * 9 8 7 11 11 C 1.53126 * 109.27449 * 300.81595 * 10 9 8 12 12 N 1.46503 * 109.57180 * 177.59087 * 11 10 9 13 13 C 1.34773 * 119.99700 * 85.28867 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99848 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47104 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99775 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00149 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99458 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99633 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00350 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47384 * 89.99884 * 21 19 17 23 23 H 1.48504 * 109.47005 * 209.99834 * 21 19 17 24 24 H 1.48502 * 109.46982 * 329.99438 * 21 19 17 25 25 C 1.53124 * 109.15864 * 57.65819 * 11 10 9 26 26 C 1.46847 * 111.00173 * 293.61382 * 8 7 5 27 27 H 1.08000 * 119.99651 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00407 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47039 * 4.99424 * 3 2 1 31 31 H 1.09005 * 109.46746 * 244.99904 * 3 2 1 32 32 H 0.97001 * 120.00008 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.47110 * 293.46059 * 7 5 4 34 34 H 1.08999 * 109.47358 * 53.45628 * 7 5 4 35 35 H 1.08996 * 109.45875 * 305.85218 * 9 8 7 36 36 H 1.08992 * 109.46460 * 65.82544 * 9 8 7 37 37 H 1.08994 * 109.50626 * 180.88030 * 10 9 8 38 38 H 1.08996 * 109.50629 * 60.75326 * 10 9 8 39 39 H 1.08995 * 109.52557 * 297.75041 * 11 10 9 40 40 H 0.97004 * 119.99988 * 265.28804 * 12 11 10 41 41 H 1.09003 * 109.47147 * 299.99952 * 15 13 12 42 42 H 1.08999 * 109.47058 * 59.99886 * 15 13 12 43 43 H 0.97000 * 120.00350 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.50017 * 182.40007 * 25 11 10 45 45 H 1.09002 * 109.50229 * 62.28469 * 25 11 10 46 46 H 1.09012 * 109.46038 * 294.17527 * 26 8 7 47 47 H 1.09002 * 109.46256 * 54.14936 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7789 2.4088 1.3328 6 8 3.7157 3.3553 0.5770 7 6 4.7402 2.4339 2.4930 8 7 5.5831 3.6337 2.4048 9 6 6.3550 3.8266 3.6390 10 6 7.1070 5.1577 3.5692 11 6 8.0422 5.1469 2.3567 12 7 8.7229 6.4398 2.2505 13 6 9.8531 6.6656 2.9491 14 8 10.3068 5.7984 3.6654 15 6 10.5537 7.9954 2.8394 16 16 12.0281 7.9890 3.8893 17 6 12.6328 9.6143 3.5774 18 1 12.1009 10.2681 2.9022 19 6 13.7923 10.0548 4.2006 20 7 14.2443 11.2689 3.9673 21 14 14.7119 8.9243 5.3691 22 1 15.7158 8.1372 4.6089 23 1 15.4004 9.7365 6.4043 24 1 13.7506 8.0005 6.0232 25 6 7.2195 4.8961 1.0898 26 6 6.4642 3.5728 1.2316 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.0445 0.5749 1.7356 33 1 4.1806 2.4510 3.4283 34 1 5.3698 1.5446 2.4626 35 1 5.6778 3.8366 4.4930 36 1 7.0695 3.0113 3.7517 37 1 7.6921 5.2933 4.4787 38 1 6.3924 5.9747 3.4703 39 1 8.7814 4.3545 2.4738 40 1 8.3602 7.1332 1.6773 41 1 10.8456 8.1679 1.8035 42 1 9.8804 8.7887 3.1641 43 1 15.0547 11.5766 4.4024 44 1 7.8850 4.8449 0.2281 45 1 6.5066 5.7091 0.9520 46 1 7.1783 2.7585 1.3555 47 1 5.8663 3.3984 0.3370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226145252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = -77.876644 kcal Electronic energy + Delta-G solvation = -26354.724487 eV Core-core repulsion = 22469.879109 eV Total energy + Delta-G solvation = -3884.845378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27439 -40.68174 -39.20470 -36.78019 -35.98878 -34.67134 -33.80272 -33.06568 -31.86476 -30.69741 -28.67028 -27.84607 -26.32054 -24.35122 -23.83974 -21.71715 -21.62138 -21.03397 -20.71821 -19.82456 -17.99644 -17.89088 -17.78973 -17.32883 -17.07130 -16.72510 -16.49483 -16.23577 -15.85694 -15.70680 -15.62459 -15.07440 -14.91053 -14.80184 -14.59998 -14.36392 -14.14175 -14.01293 -13.62096 -13.49952 -13.34356 -13.08625 -13.00517 -12.78782 -12.71618 -12.44306 -12.19498 -12.04645 -11.88625 -11.83191 -11.57915 -11.16867 -11.03558 -10.87579 -10.53902 -10.47536 -10.09396 -10.00756 -9.29276 -8.99180 -8.51366 -6.22224 0.99198 1.17588 1.31671 1.46968 1.56274 1.57305 1.67359 2.21727 2.25314 2.27551 2.71905 2.86931 2.98248 3.66348 3.79368 3.85590 3.88899 3.92662 4.05649 4.16549 4.20357 4.23798 4.32560 4.36838 4.45398 4.48001 4.48901 4.57612 4.62959 4.69345 4.77042 4.89757 4.94055 5.00078 5.01629 5.14512 5.26999 5.40612 5.51241 5.65004 5.70810 5.78337 5.94816 6.05225 6.11526 6.48842 6.61776 6.93706 7.20288 7.31584 8.61209 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.049352 B = 0.001572 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.221563 B =17812.792202 C =18109.880309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.147 3.853 4 N -0.719 5.719 5 C 0.509 3.491 6 O -0.565 6.565 7 C 0.038 3.962 8 N -0.536 5.536 9 C 0.068 3.932 10 C -0.123 4.123 11 C 0.147 3.853 12 N -0.709 5.709 13 C 0.537 3.463 14 O -0.560 6.560 15 C -0.113 4.113 16 S -0.172 6.172 17 C -0.531 4.531 18 H 0.061 0.939 19 C 0.046 3.954 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.236 1.236 25 C -0.111 4.111 26 C 0.063 3.937 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.416 0.584 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.415 0.585 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.039 0.961 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.846 -26.423 -6.269 39.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.198 4.198 3 C 0.024 3.976 4 N -0.373 5.373 5 C 0.296 3.704 6 O -0.443 6.443 7 C -0.093 4.093 8 N -0.262 5.262 9 C -0.060 4.060 10 C -0.162 4.162 11 C 0.042 3.958 12 N -0.362 5.362 13 C 0.323 3.677 14 O -0.439 6.439 15 C -0.264 4.264 16 S 0.054 5.946 17 C -0.679 4.679 18 H 0.079 0.921 19 C -0.159 4.159 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.160 1.160 25 C -0.149 4.149 26 C -0.065 4.065 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.253 0.747 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.252 0.748 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.327 -26.624 -5.673 39.287 hybrid contribution 0.585 0.706 -0.499 1.044 sum -27.742 -25.918 -6.172 38.463 Atomic orbital electron populations 1.24169 0.95811 1.03133 0.96959 1.22955 0.96287 0.97499 1.03070 1.20351 0.91565 0.96360 0.89356 1.45912 1.40480 1.19943 1.30942 1.20991 0.81223 0.81875 0.86327 1.90705 1.68827 1.36604 1.48203 1.22035 0.95627 0.93431 0.98172 1.61551 1.23580 1.37897 1.03126 1.22018 0.96003 0.96024 0.91987 1.21910 0.97784 0.98874 0.97635 1.21061 0.93469 0.84936 0.96299 1.45859 1.25120 1.17664 1.47568 1.19927 0.80668 0.87946 0.79158 1.90674 1.66339 1.46721 1.40131 1.23288 0.99505 0.98697 1.04884 1.84650 1.29403 1.19711 1.60819 1.22482 1.13918 0.98954 1.32518 0.92095 1.25568 0.96834 0.96211 0.97284 1.70020 1.23477 1.18249 1.43814 0.85857 0.80509 0.79933 0.80009 1.18669 1.18267 1.16028 1.21746 0.98248 0.98871 0.96085 1.22043 0.94161 0.96173 0.94171 0.86362 0.88428 0.85200 0.92387 0.91874 0.74681 0.85334 0.89586 0.88559 0.94013 0.92490 0.90739 0.91430 0.74836 0.86988 0.86972 0.91361 0.90136 0.90328 0.94314 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 14.32 67.78 0.97 0.22 16 2 C -0.18 -0.95 9.63 25.65 0.25 -0.70 16 3 C 0.15 1.48 6.11 85.64 0.52 2.01 16 4 N -0.72 -6.33 5.55 -466.78 -2.59 -8.91 16 5 C 0.51 7.58 7.36 87.66 0.65 8.23 16 6 O -0.57 -13.82 14.71 -3.04 -0.04 -13.87 16 7 C 0.04 0.40 5.45 85.56 0.47 0.86 16 8 N -0.54 -8.75 4.35 -900.95 -3.92 -12.67 16 9 C 0.07 1.07 5.46 86.33 0.47 1.54 16 10 C -0.12 -2.60 5.68 30.65 0.17 -2.43 16 11 C 0.15 3.31 2.52 45.07 0.11 3.42 16 12 N -0.71 -17.75 5.08 -442.13 -2.25 -19.99 16 13 C 0.54 18.75 7.82 87.66 0.69 19.44 16 14 O -0.56 -23.88 15.52 -3.04 -0.05 -23.93 16 15 C -0.11 -4.33 6.16 71.24 0.44 -3.89 16 16 S -0.17 -8.79 18.55 -56.49 -1.05 -9.84 16 17 C -0.53 -31.29 10.04 67.96 0.68 -30.61 16 18 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 19 C 0.05 2.75 5.50 84.86 0.47 3.21 16 20 N -0.92 -56.35 13.97 21.65 0.30 -56.05 16 21 Si 0.92 45.26 27.74 68.60 1.90 47.17 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 25 C -0.11 -2.04 5.57 30.65 0.17 -1.87 16 26 C 0.06 1.10 5.12 86.32 0.44 1.54 16 27 H 0.12 0.22 8.06 -2.91 -0.02 0.19 16 28 H 0.10 0.51 7.84 -2.91 -0.02 0.49 16 29 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 30 H 0.06 0.75 7.79 -2.39 -0.02 0.73 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.42 0.99 8.46 -92.71 -0.78 0.20 16 33 H 0.13 0.78 7.98 -2.38 -0.02 0.76 16 34 H 0.09 0.53 8.12 -2.39 -0.02 0.52 16 35 H 0.10 1.21 8.01 -2.39 -0.02 1.19 16 36 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.80 7.58 -2.39 -0.02 1.78 16 40 H 0.41 8.03 8.61 -92.71 -0.80 7.23 16 41 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.08 1.63 6.06 -2.39 -0.01 1.61 16 Total: -1.00 -80.03 399.32 -1.84 -81.87 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.65 Total: 15.27 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 6.50 Total: 0.96 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -8.45 Total: -97.63 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.09 Total: -37.80 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -80.03 -1.84 -81.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226145252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.994 kcal (2) G-P(sol) polarization free energy of solvation -80.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds