Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00140 * 2 1 4 4 N 1.46500 * 109.47263 * 125.00441 * 3 2 1 5 5 C 1.34777 * 120.00529 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99648 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00216 * 179.97438 * 5 4 3 8 8 N 1.46907 * 109.47201 * 173.78134 * 7 5 4 9 9 C 1.46845 * 111.00072 * 169.43159 * 8 7 5 10 10 C 1.53032 * 109.52253 * 185.84208 * 9 8 7 11 11 C 1.53118 * 109.28118 * 300.82168 * 10 9 8 12 12 C 1.53121 * 109.16123 * 57.65394 * 11 10 9 13 13 H 1.09005 * 109.53284 * 62.30579 * 12 11 10 14 14 N 1.46495 * 109.50877 * 182.40834 * 12 11 10 15 15 C 1.34779 * 119.99814 * 274.80540 * 14 12 11 16 16 O 1.21277 * 119.99961 * 0.27362 * 15 14 12 17 17 C 1.50700 * 120.00119 * 179.97438 * 15 14 12 18 18 S 1.81001 * 109.47381 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00024 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00087 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99787 * 179.97438 * 19 18 17 22 22 N 1.31640 * 119.99780 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 120.00180 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47225 * 89.99911 * 23 21 19 25 25 H 1.48508 * 109.47342 * 209.99754 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99534 * 23 21 19 27 27 C 1.46843 * 110.99979 * 293.64778 * 8 7 5 28 28 H 1.07999 * 120.00060 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99679 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99990 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47016 * 5.00519 * 3 2 1 32 32 H 1.09000 * 109.47548 * 245.00501 * 3 2 1 33 33 H 0.97002 * 120.00008 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.47145 * 53.78412 * 7 5 4 35 35 H 1.08996 * 109.47667 * 293.78202 * 7 5 4 36 36 H 1.08995 * 109.46742 * 305.85840 * 9 8 7 37 37 H 1.08997 * 109.45931 * 65.82926 * 9 8 7 38 38 H 1.08998 * 109.50692 * 60.76162 * 10 9 8 39 39 H 1.08998 * 109.50563 * 180.88347 * 10 9 8 40 40 H 1.09007 * 109.52286 * 297.75363 * 11 10 9 41 41 H 1.08995 * 109.53291 * 177.55843 * 11 10 9 42 42 H 0.97001 * 120.00614 * 94.79832 * 14 12 11 43 43 H 1.09003 * 109.47071 * 300.00348 * 17 15 14 44 44 H 1.08999 * 109.46885 * 59.99798 * 17 15 14 45 45 H 0.97001 * 119.99750 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.46613 * 54.14198 * 27 8 7 47 47 H 1.09007 * 109.46378 * 294.17173 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7784 2.4089 1.3335 6 8 3.7146 3.3558 0.5784 7 6 4.7350 2.4366 2.4976 8 7 5.5732 3.6401 2.4141 9 6 6.3399 3.8343 3.6514 10 6 7.0865 5.1686 3.5862 11 6 8.0259 5.1638 2.3771 12 6 7.2088 4.9115 1.1069 13 1 6.4930 5.7216 0.9671 14 7 8.1075 4.8482 -0.0483 15 6 8.4814 5.9818 -0.6742 16 8 8.0779 7.0546 -0.2779 17 6 9.4063 5.9168 -1.8622 18 16 9.7180 7.5905 -2.4766 19 6 10.7952 7.2267 -3.8226 20 1 11.0629 6.2030 -4.0385 21 6 11.2996 8.2559 -4.6054 22 7 12.1048 7.9841 -5.6108 23 14 10.8371 10.0266 -4.2316 24 1 11.8189 10.6040 -3.2787 25 1 10.8447 10.8164 -5.4892 26 1 9.4802 10.0674 -3.6297 27 6 6.4585 3.5847 1.2439 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4026 -0.9314 33 1 3.0447 0.5746 1.7355 34 1 5.3684 1.5500 2.4685 35 1 4.1717 2.4502 3.4306 36 1 5.6597 3.8400 4.5030 37 1 7.0574 3.0218 3.7652 38 1 6.3688 5.9828 3.4861 39 1 7.6679 5.3052 4.4980 40 1 8.7681 4.3742 2.4955 41 1 8.5278 6.1284 2.3017 42 1 8.4335 3.9905 -0.3629 43 1 10.3487 5.4573 -1.5642 44 1 8.9447 5.3211 -2.6497 45 1 12.4576 8.7034 -6.1576 46 1 5.8645 3.4091 0.3470 47 1 7.1756 2.7733 1.3690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265203387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = -48.005665 kcal Electronic energy + Delta-G solvation = -26801.279261 eV Core-core repulsion = 22917.729186 eV Total energy + Delta-G solvation = -3883.550075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48912 -39.53362 -38.23502 -36.18784 -34.73268 -33.29010 -32.88359 -32.39583 -30.53752 -28.74880 -28.19041 -26.01970 -25.56993 -23.46099 -22.98473 -21.10479 -20.44910 -20.21092 -20.03341 -17.84232 -17.42664 -17.04461 -16.47832 -16.26036 -16.02195 -15.46412 -15.17131 -15.04861 -14.93030 -14.83319 -14.24253 -14.10996 -13.91309 -13.64342 -13.57491 -13.27518 -13.20873 -12.96099 -12.75469 -12.57385 -12.29782 -11.98205 -11.69504 -11.52676 -11.22747 -11.13983 -10.97434 -10.91978 -10.77933 -10.52649 -10.36569 -9.93365 -9.81164 -9.43216 -9.41297 -8.96715 -8.86461 -8.67604 -8.44405 -6.86347 -6.25034 -3.96017 1.52186 2.32693 2.71678 2.84750 3.06973 3.27157 3.36911 3.55152 3.59074 3.88296 4.22639 4.37462 4.38682 4.51384 4.54893 4.69193 4.70783 4.79584 4.82337 4.86417 5.01190 5.06117 5.09229 5.14106 5.27319 5.27818 5.31181 5.34178 5.48005 5.51781 5.63518 5.76615 5.83886 5.91021 5.94549 5.96953 6.07401 6.14372 6.17404 6.24106 6.49926 6.61659 6.79189 7.10822 7.71192 7.91472 7.98148 8.45519 8.59755 9.21394 10.84193 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.002141 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.826543 B =13073.427435 C =14604.496875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.734 5.734 5 C 0.508 3.492 6 O -0.510 6.510 7 C 0.040 3.960 8 N -0.517 5.517 9 C 0.056 3.944 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.154 3.846 13 H 0.098 0.902 14 N -0.733 5.733 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C 0.049 3.951 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.396 0.604 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.093 0.907 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.112 -20.884 20.641 35.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.388 5.388 5 C 0.293 3.707 6 O -0.383 6.383 7 C -0.092 4.092 8 N -0.242 5.242 9 C -0.071 4.071 10 C -0.152 4.152 11 C -0.172 4.172 12 C 0.049 3.951 13 H 0.116 0.884 14 N -0.386 5.386 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.274 4.274 18 S 0.085 5.915 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.518 5.518 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.079 4.079 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.233 0.767 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.230 0.770 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -20.027 -17.885 20.513 33.789 hybrid contribution 1.182 -2.182 -0.354 2.506 sum -18.844 -20.067 20.159 34.120 Atomic orbital electron populations 1.24009 0.95813 1.02516 0.97927 1.23000 0.96248 0.98071 1.02280 1.20399 0.91845 0.95547 0.89858 1.45991 1.41627 1.20078 1.31074 1.20625 0.81226 0.82264 0.86572 1.90774 1.66782 1.34546 1.46246 1.21930 0.95895 0.93221 0.98113 1.61427 1.23586 1.36128 1.03072 1.22179 0.95934 0.97679 0.91323 1.21530 0.98395 0.97247 0.98005 1.22020 0.98089 1.02892 0.94221 1.20775 0.91334 0.98192 0.84838 0.88351 1.45938 1.50786 1.09330 1.32547 1.20235 0.80703 0.83681 0.83484 1.90697 1.54558 1.28414 1.65402 1.23282 1.01086 1.05102 0.97975 1.84792 1.63420 1.04479 1.38777 1.22331 1.31807 0.97951 1.14737 0.89427 1.24716 0.93590 0.99327 0.93724 1.69947 1.30931 1.33419 1.17505 0.86728 0.81980 0.84302 0.78821 1.19232 1.19975 1.15864 1.22390 0.94614 0.96223 0.94666 0.87845 0.88083 0.86702 0.90966 0.90528 0.76661 0.91967 0.87485 0.90401 0.94627 0.90526 0.90964 0.92185 0.90685 0.77019 0.88580 0.88521 0.91993 0.88842 0.94830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 14.32 29.01 0.42 -0.25 16 2 C -0.18 -0.79 9.63 -36.03 -0.35 -1.13 16 3 C 0.15 0.97 6.11 -5.20 -0.03 0.94 16 4 N -0.73 -4.41 5.55 -61.48 -0.34 -4.75 16 5 C 0.51 4.60 7.36 -10.99 -0.08 4.52 16 6 O -0.51 -7.19 14.70 5.56 0.08 -7.11 16 7 C 0.04 0.26 5.45 -4.98 -0.03 0.24 16 8 N -0.52 -4.88 4.35 -236.12 -1.03 -5.91 16 9 C 0.06 0.42 5.46 -3.84 -0.02 0.40 16 10 C -0.11 -1.04 6.09 -26.65 -0.16 -1.20 16 11 C -0.13 -1.54 5.58 -26.61 -0.15 -1.68 16 12 C 0.15 2.02 2.62 -67.85 -0.18 1.84 16 13 H 0.10 1.63 7.58 -51.93 -0.39 1.24 16 14 N -0.73 -10.25 5.08 -53.72 -0.27 -10.52 16 15 C 0.53 10.02 7.82 -10.98 -0.09 9.93 16 16 O -0.52 -11.70 15.53 5.56 0.09 -11.62 16 17 C -0.12 -2.49 6.16 36.01 0.22 -2.27 16 18 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 19 C -0.52 -15.32 10.04 30.94 0.31 -15.01 16 20 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 21 C 0.09 2.83 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -27.00 13.97 55.49 0.78 -26.22 16 23 Si 0.86 22.27 27.74 -169.99 -4.71 17.55 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.23 -6.12 6.74 56.52 0.38 -5.74 16 27 C 0.05 0.53 4.59 -3.83 -0.02 0.51 16 28 H 0.10 0.29 8.06 -52.49 -0.42 -0.13 16 29 H 0.10 0.41 7.84 -52.49 -0.41 0.00 16 30 H 0.12 0.37 8.06 -52.49 -0.42 -0.05 16 31 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.40 1.17 8.46 -40.82 -0.35 0.82 16 34 H 0.06 0.29 8.12 -51.93 -0.42 -0.14 16 35 H 0.11 0.47 7.98 -51.93 -0.41 0.06 16 36 H 0.08 0.46 8.01 -51.93 -0.42 0.05 16 37 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.40 4.36 8.60 -40.82 -0.35 4.01 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.09 1.19 6.05 -51.93 -0.31 0.87 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -37.51 399.30 -9.34 -46.85 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.70 Total: 1.82 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.25 Total: -0.43 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.87 Total: -47.40 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.17 Total: -18.72 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.51 -9.34 -46.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265203387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.156 kcal (2) G-P(sol) polarization free energy of solvation -37.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds