Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00140 * 2 1 4 4 N 1.46500 * 109.47263 * 125.00441 * 3 2 1 5 5 C 1.34777 * 120.00529 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99648 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00216 * 179.97438 * 5 4 3 8 8 N 1.46907 * 109.47201 * 173.78134 * 7 5 4 9 9 C 1.46845 * 111.00072 * 169.43159 * 8 7 5 10 10 C 1.53032 * 109.52253 * 185.84208 * 9 8 7 11 11 C 1.53118 * 109.28118 * 300.82168 * 10 9 8 12 12 C 1.53121 * 109.16123 * 57.65394 * 11 10 9 13 13 H 1.09005 * 109.53284 * 62.30579 * 12 11 10 14 14 N 1.46495 * 109.50877 * 182.40834 * 12 11 10 15 15 C 1.34779 * 119.99814 * 274.80540 * 14 12 11 16 16 O 1.21277 * 119.99961 * 0.27362 * 15 14 12 17 17 C 1.50700 * 120.00119 * 179.97438 * 15 14 12 18 18 S 1.81001 * 109.47381 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00024 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00087 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99787 * 179.97438 * 19 18 17 22 22 N 1.31640 * 119.99780 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 120.00180 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47225 * 89.99911 * 23 21 19 25 25 H 1.48508 * 109.47342 * 209.99754 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99534 * 23 21 19 27 27 C 1.46843 * 110.99979 * 293.64778 * 8 7 5 28 28 H 1.07999 * 120.00060 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99679 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99990 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47016 * 5.00519 * 3 2 1 32 32 H 1.09000 * 109.47548 * 245.00501 * 3 2 1 33 33 H 0.97002 * 120.00008 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.47145 * 53.78412 * 7 5 4 35 35 H 1.08996 * 109.47667 * 293.78202 * 7 5 4 36 36 H 1.08995 * 109.46742 * 305.85840 * 9 8 7 37 37 H 1.08997 * 109.45931 * 65.82926 * 9 8 7 38 38 H 1.08998 * 109.50692 * 60.76162 * 10 9 8 39 39 H 1.08998 * 109.50563 * 180.88347 * 10 9 8 40 40 H 1.09007 * 109.52286 * 297.75363 * 11 10 9 41 41 H 1.08995 * 109.53291 * 177.55843 * 11 10 9 42 42 H 0.97001 * 120.00614 * 94.79832 * 14 12 11 43 43 H 1.09003 * 109.47071 * 300.00348 * 17 15 14 44 44 H 1.08999 * 109.46885 * 59.99798 * 17 15 14 45 45 H 0.97001 * 119.99750 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.46613 * 54.14198 * 27 8 7 47 47 H 1.09007 * 109.46378 * 294.17173 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7784 2.4089 1.3335 6 8 3.7146 3.3558 0.5784 7 6 4.7350 2.4366 2.4976 8 7 5.5732 3.6401 2.4141 9 6 6.3399 3.8343 3.6514 10 6 7.0865 5.1686 3.5862 11 6 8.0259 5.1638 2.3771 12 6 7.2088 4.9115 1.1069 13 1 6.4930 5.7216 0.9671 14 7 8.1075 4.8482 -0.0483 15 6 8.4814 5.9818 -0.6742 16 8 8.0779 7.0546 -0.2779 17 6 9.4063 5.9168 -1.8622 18 16 9.7180 7.5905 -2.4766 19 6 10.7952 7.2267 -3.8226 20 1 11.0629 6.2030 -4.0385 21 6 11.2996 8.2559 -4.6054 22 7 12.1048 7.9841 -5.6108 23 14 10.8371 10.0266 -4.2316 24 1 11.8189 10.6040 -3.2787 25 1 10.8447 10.8164 -5.4892 26 1 9.4802 10.0674 -3.6297 27 6 6.4585 3.5847 1.2439 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4026 -0.9314 33 1 3.0447 0.5746 1.7355 34 1 5.3684 1.5500 2.4685 35 1 4.1717 2.4502 3.4306 36 1 5.6597 3.8400 4.5030 37 1 7.0574 3.0218 3.7652 38 1 6.3688 5.9828 3.4861 39 1 7.6679 5.3052 4.4980 40 1 8.7681 4.3742 2.4955 41 1 8.5278 6.1284 2.3017 42 1 8.4335 3.9905 -0.3629 43 1 10.3487 5.4573 -1.5642 44 1 8.9447 5.3211 -2.6497 45 1 12.4576 8.7034 -6.1576 46 1 5.8645 3.4091 0.3470 47 1 7.1756 2.7733 1.3690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265203387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = -77.960021 kcal Electronic energy + Delta-G solvation = -26802.578179 eV Core-core repulsion = 22917.729186 eV Total energy + Delta-G solvation = -3884.848993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33627 -40.66130 -39.22613 -36.77259 -35.86694 -34.68319 -33.98861 -33.59227 -31.79880 -29.74402 -29.09698 -27.85581 -26.57596 -24.21738 -23.91887 -21.81011 -21.59698 -20.99215 -20.71508 -19.86685 -18.04280 -17.95984 -17.83830 -17.21005 -17.05698 -16.70646 -16.52734 -16.26279 -15.84392 -15.73461 -15.61276 -15.01974 -14.87723 -14.84859 -14.72623 -14.49632 -14.21482 -13.94206 -13.65617 -13.45964 -13.39792 -13.34018 -13.02903 -12.81385 -12.66069 -12.38571 -12.06327 -11.95115 -11.87832 -11.78188 -11.64565 -11.18197 -10.98353 -10.97062 -10.55082 -10.48902 -10.14733 -10.01347 -9.27780 -9.01360 -8.52821 -6.23663 0.96473 1.16803 1.29891 1.45439 1.53364 1.54626 1.67536 2.08560 2.24127 2.31388 2.69345 2.85214 3.07270 3.64502 3.78983 3.83309 3.87636 3.95480 4.04898 4.14269 4.17009 4.20755 4.27449 4.35733 4.43170 4.45998 4.55755 4.60668 4.61455 4.73154 4.76020 4.89639 4.95831 4.99451 5.07568 5.24177 5.32683 5.39911 5.44592 5.63523 5.69706 5.77712 5.93037 6.08416 6.09975 6.44640 6.62694 6.92370 7.18207 7.33360 8.59535 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.002141 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.826543 B =13073.427435 C =14604.496875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.178 4.178 3 C 0.146 3.854 4 N -0.716 5.716 5 C 0.502 3.498 6 O -0.571 6.571 7 C 0.045 3.955 8 N -0.544 5.544 9 C 0.061 3.939 10 C -0.112 4.112 11 C -0.127 4.127 12 C 0.153 3.847 13 H 0.055 0.945 14 N -0.709 5.709 15 C 0.536 3.464 16 O -0.562 6.562 17 C -0.110 4.110 18 S -0.177 6.177 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.258 1.258 26 H -0.240 1.240 27 C 0.062 3.938 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.418 0.582 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.415 0.585 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.277 0.723 46 H 0.070 0.930 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.734 -23.479 23.195 38.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.022 3.978 4 N -0.371 5.371 5 C 0.289 3.711 6 O -0.450 6.450 7 C -0.086 4.086 8 N -0.269 5.269 9 C -0.066 4.066 10 C -0.150 4.150 11 C -0.166 4.166 12 C 0.048 3.952 13 H 0.073 0.927 14 N -0.362 5.362 15 C 0.322 3.678 16 O -0.440 6.440 17 C -0.260 4.260 18 S 0.050 5.950 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.736 3.264 24 H -0.185 1.185 25 H -0.182 1.182 26 H -0.164 1.164 27 C -0.066 4.066 28 H 0.139 0.861 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.255 0.745 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.252 0.748 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.659 -20.587 23.102 37.206 hybrid contribution 1.288 -1.534 -1.100 2.285 sum -19.371 -22.121 22.002 36.724 Atomic orbital electron populations 1.24172 0.95803 1.03132 0.96961 1.22944 0.96273 0.97374 1.03072 1.20331 0.91608 0.96456 0.89404 1.45878 1.40397 1.19965 1.30823 1.21246 0.81418 0.81803 0.86643 1.90759 1.68743 1.36894 1.48564 1.22037 0.95505 0.93180 0.97855 1.61311 1.24028 1.38390 1.03209 1.22209 0.96548 0.96839 0.90985 1.21539 0.97847 0.98037 0.97570 1.21955 0.98564 1.01777 0.94327 1.20840 0.90763 0.98652 0.84904 0.92673 1.45720 1.49656 1.08770 1.32081 1.19987 0.80383 0.84236 0.83214 1.90686 1.56369 1.30289 1.66643 1.23261 1.02733 1.01132 0.98922 1.84755 1.62659 1.09792 1.37826 1.22452 1.32317 0.96986 1.15866 0.91865 1.25550 0.93562 1.03213 0.93613 1.70017 1.31923 1.34978 1.18427 0.85874 0.81418 0.79810 0.79316 1.18542 1.18179 1.16396 1.22145 0.94679 0.94926 0.94852 0.86134 0.88621 0.84942 0.92678 0.92345 0.74491 0.88751 0.84610 0.88151 0.92425 0.92765 0.88850 0.90093 0.93893 0.74843 0.86529 0.87026 0.91335 0.91201 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 14.32 67.78 0.97 -0.11 16 2 C -0.18 -1.31 9.63 25.65 0.25 -1.07 16 3 C 0.15 1.90 6.11 85.63 0.52 2.43 16 4 N -0.72 -7.53 5.55 -466.80 -2.59 -10.12 16 5 C 0.50 8.52 7.36 87.66 0.65 9.17 16 6 O -0.57 -16.62 14.70 -3.03 -0.04 -16.66 16 7 C 0.04 0.44 5.45 85.55 0.47 0.90 16 8 N -0.54 -9.02 4.35 -900.94 -3.92 -12.94 16 9 C 0.06 0.69 5.46 86.32 0.47 1.17 16 10 C -0.11 -1.85 6.09 30.64 0.19 -1.66 16 11 C -0.13 -2.81 5.58 30.67 0.17 -2.64 16 12 C 0.15 4.00 2.62 45.05 0.12 4.11 16 13 H 0.05 1.94 7.58 -2.38 -0.02 1.92 16 14 N -0.71 -19.38 5.08 -442.28 -2.25 -21.63 16 15 C 0.54 20.25 7.82 87.66 0.69 20.94 16 16 O -0.56 -26.27 15.53 -3.02 -0.05 -26.31 16 17 C -0.11 -4.38 6.16 71.24 0.44 -3.94 16 18 S -0.18 -9.34 18.55 -56.49 -1.05 -10.39 16 19 C -0.53 -31.61 10.04 67.95 0.68 -30.93 16 20 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 21 C 0.05 2.77 5.50 84.86 0.47 3.24 16 22 N -0.92 -56.65 13.97 21.65 0.30 -56.35 16 23 Si 0.91 46.31 27.74 68.60 1.90 48.22 16 24 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.24 -12.29 6.74 99.48 0.67 -11.61 16 27 C 0.06 1.24 4.59 86.33 0.40 1.63 16 28 H 0.12 0.41 8.06 -2.91 -0.02 0.38 16 29 H 0.10 0.73 7.84 -2.91 -0.02 0.70 16 30 H 0.13 0.53 8.06 -2.91 -0.02 0.50 16 31 H 0.05 0.90 7.79 -2.39 -0.02 0.88 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.42 1.24 8.46 -92.71 -0.78 0.45 16 34 H 0.09 0.38 8.12 -2.39 -0.02 0.36 16 35 H 0.14 0.58 7.98 -2.39 -0.02 0.56 16 36 H 0.10 0.75 8.01 -2.39 -0.02 0.73 16 37 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.41 8.32 8.60 -92.71 -0.80 7.52 16 43 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 44 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 45 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.07 1.75 6.05 -2.39 -0.01 1.74 16 47 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -86.11 399.30 -1.86 -87.98 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.65 Total: 14.95 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 6.47 Total: 3.25 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -8.45 Total: -101.04 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.09 Total: -42.98 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.22 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.05 Total: -10.39 kcal Total: -86.11 -1.86 -87.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265203387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.015 kcal (2) G-P(sol) polarization free energy of solvation -86.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds