Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47771 * 2 1 4 4 N 1.46504 * 109.46802 * 120.00064 * 2 1 3 5 5 C 1.34774 * 120.00210 * 84.99913 * 4 2 1 6 6 S 1.71195 * 120.00235 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99773 * 180.02562 * 5 4 2 8 8 C 1.47663 * 134.45465 * 179.97438 * 7 5 4 9 9 C 1.53504 * 85.98199 * 155.69617 * 8 7 5 10 10 C 1.47667 * 134.46212 * 0.02562 * 7 5 4 11 11 C 1.52775 * 113.51507 * 269.06188 * 9 8 7 12 12 O 1.43385 * 108.24369 * 273.83821 * 11 9 8 13 13 C 1.42825 * 113.34170 * 294.36606 * 12 11 9 14 14 C 1.50280 * 110.49715 * 51.30535 * 13 12 11 15 15 O 1.21282 * 118.96933 * 161.60073 * 14 13 12 16 16 N 1.34274 * 122.05565 * 341.62017 * 14 13 12 17 17 C 1.46503 * 119.37732 * 181.94524 * 16 14 13 18 18 C 1.52998 * 109.47005 * 90.00134 * 17 16 14 19 19 C 1.50697 * 109.47130 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99936 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00401 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99663 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00484 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47079 * 89.99886 * 23 21 19 25 25 H 1.48502 * 109.47388 * 210.00173 * 23 21 19 26 26 H 1.48500 * 109.46893 * 330.00229 * 23 21 19 27 27 H 1.08993 * 109.47308 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47175 * 300.00596 * 1 2 3 29 29 H 1.09004 * 109.46685 * 60.00063 * 1 2 3 30 30 H 1.09000 * 109.47175 * 239.99404 * 2 1 3 31 31 H 1.08998 * 109.47626 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46964 * 299.99766 * 3 2 1 33 33 H 1.09000 * 109.47257 * 59.99454 * 3 2 1 34 34 H 0.97001 * 119.99694 * 264.99815 * 4 2 1 35 35 H 1.09004 * 113.79402 * 41.43656 * 8 7 5 36 36 H 1.08996 * 113.79359 * 269.96069 * 8 7 5 37 37 H 1.08993 * 113.78437 * 90.03898 * 10 7 5 38 38 H 1.08998 * 113.79058 * 318.57950 * 10 7 5 39 39 H 1.08996 * 109.72519 * 154.14324 * 11 9 8 40 40 H 1.08996 * 109.70006 * 33.51672 * 11 9 8 41 41 H 1.09004 * 109.26498 * 171.56726 * 13 12 11 42 42 H 1.09002 * 109.27186 * 291.03856 * 13 12 11 43 43 H 1.09000 * 109.46616 * 210.00120 * 17 16 14 44 44 H 1.08999 * 109.47298 * 330.00132 * 17 16 14 45 45 H 1.09002 * 109.46916 * 299.99530 * 18 17 16 46 46 H 1.09004 * 109.47246 * 59.99411 * 18 17 16 47 47 H 0.97007 * 119.99893 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1469 -2.0322 1.1945 6 16 1.7392 -2.9295 -0.2053 7 7 2.5957 -2.6676 2.2952 8 6 2.8531 -4.0798 2.6414 9 6 3.8385 -3.5322 3.6833 10 6 3.0259 -2.2306 3.6385 11 6 5.2637 -3.3814 3.1541 12 8 5.9381 -4.6363 3.3166 13 6 6.1239 -5.0061 4.6836 14 6 4.8237 -4.9227 5.4326 15 8 4.7158 -5.5086 6.4891 16 7 3.7777 -4.2203 4.9686 17 6 2.5521 -4.1437 5.7677 18 6 2.6278 -2.9351 6.7028 19 6 1.3674 -2.8566 7.5252 20 1 0.5900 -3.5947 7.3937 21 6 1.2067 -1.8427 8.4455 22 7 2.1536 -0.9442 8.6059 23 14 -0.3559 -1.7450 9.4644 24 1 -0.1779 -2.5190 10.7191 25 1 -0.6437 -0.3260 9.7947 26 1 -1.4885 -2.3123 8.6893 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4423 0.0005 32 1 1.6769 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 2.2489 -0.1823 1.9895 35 1 3.3290 -4.6487 1.8426 36 1 1.9932 -4.5900 3.0751 37 1 2.2172 -2.1919 4.3681 38 1 3.6389 -1.3294 3.6323 39 1 5.7855 -2.6081 3.7178 40 1 5.2371 -3.1125 2.0982 41 1 6.5020 -6.0273 4.7317 42 1 6.8477 -4.3330 5.1431 43 1 1.6928 -4.0376 5.1055 44 1 2.4458 -5.0537 6.3580 45 1 3.4871 -3.0412 7.3649 46 1 2.7342 -2.0250 6.1124 47 1 2.0407 -0.2309 9.2537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275772598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = -19.594993 kcal Electronic energy + Delta-G solvation = -28906.645551 eV Core-core repulsion = 25024.327455 eV Total energy + Delta-G solvation = -3882.318096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69531 -39.53446 -38.17544 -37.52600 -35.28318 -33.44372 -32.72115 -30.44289 -29.85480 -28.15280 -27.51639 -26.78887 -26.71168 -24.45667 -23.21696 -21.87114 -21.40464 -20.78774 -18.60000 -18.31980 -17.85735 -17.50769 -16.87963 -16.29768 -15.87539 -15.64579 -15.34737 -15.10212 -14.80447 -14.54320 -14.38632 -14.15073 -13.92738 -13.70182 -13.45311 -13.20067 -12.66262 -12.59058 -12.52203 -12.47268 -12.22608 -12.03626 -11.77894 -11.71035 -11.46448 -11.27454 -11.11808 -11.06109 -10.96409 -10.86720 -10.58741 -10.14890 -10.08863 -9.55173 -9.29146 -9.03022 -8.54019 -8.45038 -7.76378 -7.46416 -6.20225 -4.23917 1.38244 1.73546 2.37077 2.59792 2.87694 3.09728 3.20880 3.27928 3.30640 3.42701 4.00285 4.10352 4.27206 4.32777 4.43825 4.53167 4.74313 4.88481 4.91280 5.02501 5.06128 5.14920 5.16927 5.18075 5.31400 5.32688 5.39027 5.40912 5.44518 5.56944 5.61532 5.65690 5.77828 5.83797 6.13217 6.26041 6.33644 6.39323 6.54349 6.59298 6.65969 7.21625 7.30658 7.45897 7.61402 7.77581 8.11895 8.24471 8.81953 9.41725 10.90732 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008033 B = 0.004327 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.911648 B = 6469.624159 C = 9004.485181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 C -0.163 4.163 4 N -0.682 5.682 5 C 0.601 3.399 6 S -0.663 6.663 7 N -0.604 5.604 8 C 0.126 3.874 9 C 0.106 3.894 10 C 0.079 3.921 11 C 0.075 3.925 12 O -0.363 6.363 13 C 0.046 3.954 14 C 0.487 3.513 15 O -0.525 6.525 16 N -0.585 5.585 17 C 0.108 3.892 18 C 0.013 3.987 19 C -0.525 4.525 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.893 3.107 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.398 0.602 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.024 0.976 46 H 0.018 0.982 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 3.244 -14.861 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 C -0.220 4.220 4 N -0.312 5.312 5 C 0.243 3.757 6 S -0.534 6.534 7 N -0.315 5.315 8 C 0.003 3.997 9 C 0.017 3.983 10 C -0.047 4.047 11 C -0.002 4.002 12 O -0.281 6.281 13 C -0.034 4.034 14 C 0.274 3.726 15 O -0.401 6.401 16 N -0.318 5.318 17 C -0.012 4.012 18 C -0.025 4.025 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.234 0.766 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.042 0.958 46 H 0.036 0.964 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.159 2.513 -15.429 16.462 hybrid contribution -0.786 1.223 2.089 2.545 sum 4.373 3.736 -13.340 14.527 Atomic orbital electron populations 1.22174 0.94235 1.03888 1.01993 1.21405 0.95136 0.92233 0.87804 1.22121 1.01780 0.94803 1.03343 1.45157 1.64500 1.03690 1.17870 1.21700 0.79719 0.85247 0.89035 1.93419 1.71942 1.66346 1.21696 1.48901 1.61400 1.11227 1.10015 1.23843 0.97962 0.81901 0.96036 1.22480 0.97102 0.93420 0.85276 1.24356 0.99276 0.98170 0.82919 1.22717 0.87647 0.86980 1.02883 1.88177 1.77844 1.37831 1.24253 1.22869 0.94405 1.04333 0.81768 1.20974 0.86048 0.78992 0.86604 1.90778 1.82129 1.44504 1.22726 1.47717 1.16174 1.49581 1.18285 1.22050 0.82540 1.03094 0.93499 1.19479 0.98201 0.90945 0.93832 1.21050 1.02536 1.11614 1.21128 0.92421 1.24963 0.96637 0.95529 0.96847 1.69951 1.33002 1.14847 1.35291 0.86567 0.83315 0.77255 0.80758 1.20438 1.21174 1.19769 0.90706 0.92793 0.91196 0.86761 0.91908 0.90220 0.92020 0.76586 0.87340 0.87778 0.85177 0.88743 0.90804 0.86491 0.85127 0.89251 0.91697 0.89865 0.95805 0.96427 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.43 37.16 0.35 -1.18 16 2 C 0.14 1.24 2.95 -67.93 -0.20 1.04 16 3 C -0.16 -1.02 9.38 37.15 0.35 -0.67 16 4 N -0.68 -6.76 5.08 -55.52 -0.28 -7.05 16 5 C 0.60 7.61 8.06 -86.92 -0.70 6.91 16 6 S -0.66 -10.80 27.83 -107.50 -2.99 -13.79 16 7 N -0.60 -7.03 3.49 -182.48 -0.64 -7.67 16 8 C 0.13 1.50 7.55 -3.15 -0.02 1.47 16 9 C 0.11 1.26 1.50 -135.75 -0.20 1.05 16 10 C 0.08 0.90 6.63 -3.15 -0.02 0.88 16 11 C 0.08 0.75 5.99 37.04 0.22 0.97 16 12 O -0.36 -4.07 10.84 -35.23 -0.38 -4.45 16 13 C 0.05 0.52 6.94 35.80 0.25 0.77 16 14 C 0.49 7.78 7.64 -11.41 -0.09 7.69 16 15 O -0.53 -10.65 16.45 5.56 0.09 -10.56 16 16 N -0.58 -8.92 2.66 -162.63 -0.43 -9.35 16 17 C 0.11 1.99 4.43 -4.04 -0.02 1.98 16 18 C 0.01 0.30 4.93 -27.89 -0.14 0.16 16 19 C -0.52 -13.64 9.11 -34.44 -0.31 -13.95 16 20 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 23 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 H 0.07 0.90 7.48 -51.93 -0.39 0.51 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.11 1.23 6.82 -51.93 -0.35 0.87 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 3.33 8.21 -40.82 -0.34 2.99 16 35 H 0.11 1.28 8.09 -51.93 -0.42 0.86 16 36 H 0.10 1.30 7.22 -51.93 -0.38 0.92 16 37 H 0.13 1.85 5.01 -51.93 -0.26 1.59 16 38 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 40 H 0.12 1.04 7.97 -51.93 -0.41 0.62 16 41 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.10 6.31 -51.93 -0.33 0.77 16 44 H 0.08 1.70 7.30 -51.93 -0.38 1.33 16 45 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.02 0.40 6.02 -51.93 -0.31 0.08 16 47 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -33.31 388.33 -11.03 -44.34 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.33 Total: 2.62 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.63 Total: 8.70 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.61 Total: -48.28 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.29 Total: -15.01 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -2.99 Total: -13.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.31 -11.03 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275772598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.743 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds