Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00233 * 2 1 4 4 N 1.46494 * 109.47489 * 125.00295 * 3 2 1 5 5 C 1.34776 * 120.00731 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.00400 * 179.97438 * 5 4 3 8 8 N 1.46907 * 109.47226 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00049 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.88981 * 322.57493 * 9 8 7 11 11 C 1.55164 * 111.00285 * 198.65244 * 9 8 7 12 12 C 1.54316 * 102.86122 * 206.23119 * 11 9 8 13 13 H 1.08991 * 109.77722 * 141.88874 * 12 11 9 14 14 C 1.53006 * 109.98486 * 263.04661 * 12 11 9 15 15 N 1.47022 * 107.27524 * 22.52478 * 12 11 9 16 16 C 1.34780 * 125.64445 * 180.97088 * 15 12 11 17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12 18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47315 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47332 * 119.99854 * 24 22 20 27 27 H 1.48499 * 109.47328 * 240.00154 * 24 22 20 28 28 C 1.47417 * 108.70718 * 0.70388 * 15 12 11 29 29 H 1.07995 * 120.00264 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99740 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.00074 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47276 * 4.99988 * 3 2 1 33 33 H 1.09001 * 109.47422 * 245.00357 * 3 2 1 34 34 H 0.97009 * 119.99707 * 359.97438 * 4 3 2 35 35 H 1.08997 * 109.47182 * 60.00123 * 7 5 4 36 36 H 1.08994 * 109.47456 * 299.99868 * 7 5 4 37 37 H 1.00897 * 110.99637 * 303.95801 * 8 7 5 38 38 H 1.08999 * 110.71826 * 324.78650 * 11 9 8 39 39 H 1.09001 * 110.71871 * 87.88486 * 11 9 8 40 40 H 1.09000 * 109.46764 * 179.32670 * 14 12 11 41 41 H 1.08995 * 109.47173 * 299.33426 * 14 12 11 42 42 H 1.09005 * 109.47008 * 59.33627 * 14 12 11 43 43 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 44 44 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 45 45 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 46 46 H 1.09003 * 110.36538 * 94.93107 * 28 15 12 47 47 H 1.08998 * 110.37116 * 217.14771 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 3.7784 2.4089 1.3334 6 8 3.7145 3.3558 0.5783 7 6 4.7349 2.4367 2.4975 8 7 5.4696 3.7088 2.4974 9 6 6.4132 3.7718 3.6215 10 1 5.9898 3.3053 4.5110 11 6 6.8384 5.2361 3.9092 12 6 8.2278 5.0688 4.5595 13 1 8.8921 5.8634 4.2198 14 6 8.1001 5.1095 6.0837 15 7 8.7535 3.7626 4.1365 16 6 9.9372 3.2350 4.5066 17 8 10.6716 3.8534 5.2476 18 6 10.3484 1.8768 3.9994 19 16 11.9752 1.4500 4.6684 20 6 12.2013 -0.1359 3.9348 21 1 11.4379 -0.5467 3.2906 22 6 13.3600 -0.8578 4.1856 23 7 14.2900 -0.3574 4.9711 24 14 13.5993 -2.5395 3.4084 25 1 12.4165 -2.8723 2.5744 26 1 14.8164 -2.5230 2.5578 27 1 13.7549 -3.5604 4.4755 28 6 7.7686 3.1225 3.2457 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0446 0.5746 1.7355 35 1 5.4401 1.6103 2.4081 36 1 4.1769 2.3390 3.4287 37 1 5.9435 3.8526 1.6184 38 1 6.9082 5.8065 2.9830 39 1 6.1428 5.7107 4.6013 40 1 9.0840 4.9788 6.5343 41 1 7.6858 6.0706 6.3880 42 1 7.4396 4.3080 6.4145 43 1 9.6177 1.1335 4.3182 44 1 10.3970 1.8949 2.9107 45 1 15.1000 -0.8617 5.1462 46 1 8.0110 3.3272 2.2028 47 1 7.7384 2.0476 3.4235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278348052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = -45.128348 kcal Electronic energy + Delta-G solvation = -26602.640254 eV Core-core repulsion = 22719.214949 eV Total energy + Delta-G solvation = -3883.425305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36770 -39.86879 -37.71084 -36.30429 -35.02275 -33.26412 -32.45822 -32.18025 -30.32348 -28.75051 -27.49921 -25.89666 -25.51823 -25.12276 -22.46096 -21.17181 -20.95588 -20.36704 -19.01045 -17.76264 -17.62816 -16.94052 -16.63756 -16.36743 -16.05075 -15.46742 -15.17715 -14.84660 -14.80651 -14.64348 -14.02406 -13.91378 -13.78745 -13.71464 -13.37467 -13.07378 -13.05989 -12.90713 -12.70043 -12.53888 -12.43976 -12.01687 -11.80115 -11.71562 -11.57438 -11.09875 -11.09732 -11.02487 -10.78428 -10.77688 -10.47604 -9.99959 -9.83445 -9.49311 -9.40295 -9.10182 -8.85002 -8.50753 -8.25468 -6.52830 -6.24455 -3.95027 1.50744 2.27788 2.73553 2.90933 3.05258 3.18927 3.23219 3.28292 3.54929 3.83748 4.17165 4.20175 4.29254 4.38933 4.43507 4.52884 4.71042 4.86128 4.92734 5.01043 5.02781 5.04418 5.10714 5.11968 5.22970 5.29244 5.32644 5.42541 5.53708 5.58871 5.64179 5.74130 5.79997 5.85682 5.86857 5.96002 6.07977 6.09695 6.12450 6.30631 6.47115 6.56979 6.88962 7.08117 7.56625 7.66856 7.83767 8.32308 8.56049 9.20806 10.82988 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.002400 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.866323 B =11663.650795 C =14545.937878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.732 5.732 5 C 0.513 3.487 6 O -0.525 6.525 7 C 0.037 3.963 8 N -0.658 5.658 9 C 0.077 3.923 10 H 0.098 0.902 11 C -0.114 4.114 12 C 0.135 3.865 13 H 0.075 0.925 14 C -0.163 4.163 15 N -0.619 5.619 16 C 0.549 3.451 17 O -0.511 6.511 18 C -0.147 4.147 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.866 5.866 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 C 0.071 3.929 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.355 0.645 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.268 0.732 46 H 0.068 0.932 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.449 3.625 -6.628 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.385 5.385 5 C 0.298 3.702 6 O -0.400 6.400 7 C -0.095 4.095 8 N -0.290 5.290 9 C -0.034 4.034 10 H 0.116 0.884 11 C -0.152 4.152 12 C 0.031 3.969 13 H 0.093 0.907 14 C -0.221 4.221 15 N -0.357 5.357 16 C 0.337 3.663 17 O -0.385 6.385 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.055 4.055 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.176 0.824 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.632 5.545 -5.661 27.785 hybrid contribution -0.032 -3.014 -1.485 3.360 sum -26.664 2.531 -7.145 27.721 Atomic orbital electron populations 1.24004 0.95796 1.02510 0.97931 1.23017 0.96277 0.98135 1.02254 1.20394 0.91795 0.95581 0.89820 1.45981 1.41370 1.20152 1.31042 1.20624 0.81097 0.82097 0.86347 1.90733 1.67579 1.34858 1.46798 1.21873 0.96610 0.93009 0.98014 1.60244 1.30065 1.31678 1.07022 1.22825 0.89339 0.96864 0.94351 0.88413 1.22692 0.94906 0.95929 1.01697 1.21528 0.94197 0.85970 0.95198 0.90696 1.22152 1.03557 1.01446 0.94960 1.48474 1.18341 1.19428 1.49446 1.20000 0.78967 0.87237 0.80065 1.90695 1.50822 1.61788 1.35189 1.23515 1.06523 0.95403 1.04316 1.85410 1.11868 1.22290 1.63690 1.22887 1.07337 1.03444 1.34643 0.90975 1.24998 0.94873 0.98684 0.95072 1.70027 1.07805 1.37827 1.34519 0.86114 0.78281 0.82154 0.78919 1.19664 1.20532 1.20549 1.23064 0.89165 0.98552 0.94676 0.87796 0.88134 0.86571 0.91023 0.90604 0.76342 0.91620 0.87689 0.82443 0.90045 0.89492 0.90695 0.91948 0.92709 0.89541 0.89501 0.92209 0.91407 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 14.32 29.02 0.42 -0.22 16 2 C -0.18 -0.78 9.63 -36.02 -0.35 -1.12 16 3 C 0.15 0.90 6.11 -5.20 -0.03 0.87 16 4 N -0.73 -4.36 5.55 -61.48 -0.34 -4.70 16 5 C 0.51 4.36 7.87 -10.99 -0.09 4.27 16 6 O -0.52 -6.66 16.20 5.56 0.09 -6.57 16 7 C 0.04 0.24 6.04 -4.98 -0.03 0.21 16 8 N -0.66 -5.42 6.00 -105.72 -0.63 -6.06 16 9 C 0.08 0.65 3.32 -65.56 -0.22 0.43 16 10 H 0.10 0.77 7.92 -51.93 -0.41 0.36 16 11 C -0.11 -1.01 6.19 -24.90 -0.15 -1.16 16 12 C 0.13 1.62 3.48 -66.95 -0.23 1.38 16 13 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 14 C -0.16 -1.96 9.07 37.16 0.34 -1.62 16 15 N -0.62 -8.79 3.08 -163.02 -0.50 -9.30 16 16 C 0.55 10.51 7.65 -10.98 -0.08 10.43 16 17 O -0.51 -11.67 14.77 5.56 0.08 -11.59 16 18 C -0.15 -3.00 5.16 36.01 0.19 -2.82 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 24 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.07 0.75 6.28 -2.53 -0.02 0.73 16 29 H 0.10 0.29 8.06 -52.49 -0.42 -0.13 16 30 H 0.10 0.37 7.84 -52.48 -0.41 -0.05 16 31 H 0.12 0.41 8.06 -52.48 -0.42 -0.01 16 32 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.37 8.46 -40.82 -0.35 1.03 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.11 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.35 3.14 8.01 -39.29 -0.31 2.83 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.68 7.84 -51.93 -0.41 0.28 16 40 H 0.07 1.15 6.75 -51.93 -0.35 0.80 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.63 7.84 -51.92 -0.41 1.22 16 44 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 0.68 7.80 -51.93 -0.41 0.28 16 47 H 0.08 0.77 7.47 -51.93 -0.39 0.38 16 LS Contribution 405.41 15.07 6.11 6.11 Total: -1.00 -36.41 405.41 -9.38 -45.78 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.61 Total: 0.72 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.06 Total: -1.50 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.74 Total: -45.36 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.41 -9.38 -45.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.654 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds