Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00233 * 2 1 4 4 N 1.46494 * 109.47489 * 125.00295 * 3 2 1 5 5 C 1.34776 * 120.00731 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.00400 * 179.97438 * 5 4 3 8 8 N 1.46907 * 109.47226 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00049 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.88981 * 322.57493 * 9 8 7 11 11 C 1.55164 * 111.00285 * 198.65244 * 9 8 7 12 12 C 1.54316 * 102.86122 * 206.23119 * 11 9 8 13 13 H 1.08991 * 109.77722 * 141.88874 * 12 11 9 14 14 C 1.53006 * 109.98486 * 263.04661 * 12 11 9 15 15 N 1.47022 * 107.27524 * 22.52478 * 12 11 9 16 16 C 1.34780 * 125.64445 * 180.97088 * 15 12 11 17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12 18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47315 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47332 * 119.99854 * 24 22 20 27 27 H 1.48499 * 109.47328 * 240.00154 * 24 22 20 28 28 C 1.47417 * 108.70718 * 0.70388 * 15 12 11 29 29 H 1.07995 * 120.00264 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99740 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.00074 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47276 * 4.99988 * 3 2 1 33 33 H 1.09001 * 109.47422 * 245.00357 * 3 2 1 34 34 H 0.97009 * 119.99707 * 359.97438 * 4 3 2 35 35 H 1.08997 * 109.47182 * 60.00123 * 7 5 4 36 36 H 1.08994 * 109.47456 * 299.99868 * 7 5 4 37 37 H 1.00897 * 110.99637 * 303.95801 * 8 7 5 38 38 H 1.08999 * 110.71826 * 324.78650 * 11 9 8 39 39 H 1.09001 * 110.71871 * 87.88486 * 11 9 8 40 40 H 1.09000 * 109.46764 * 179.32670 * 14 12 11 41 41 H 1.08995 * 109.47173 * 299.33426 * 14 12 11 42 42 H 1.09005 * 109.47008 * 59.33627 * 14 12 11 43 43 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 44 44 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 45 45 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 46 46 H 1.09003 * 110.36538 * 94.93107 * 28 15 12 47 47 H 1.08998 * 110.37116 * 217.14771 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 3.7784 2.4089 1.3334 6 8 3.7145 3.3558 0.5783 7 6 4.7349 2.4367 2.4975 8 7 5.4696 3.7088 2.4974 9 6 6.4132 3.7718 3.6215 10 1 5.9898 3.3053 4.5110 11 6 6.8384 5.2361 3.9092 12 6 8.2278 5.0688 4.5595 13 1 8.8921 5.8634 4.2198 14 6 8.1001 5.1095 6.0837 15 7 8.7535 3.7626 4.1365 16 6 9.9372 3.2350 4.5066 17 8 10.6716 3.8534 5.2476 18 6 10.3484 1.8768 3.9994 19 16 11.9752 1.4500 4.6684 20 6 12.2013 -0.1359 3.9348 21 1 11.4379 -0.5467 3.2906 22 6 13.3600 -0.8578 4.1856 23 7 14.2900 -0.3574 4.9711 24 14 13.5993 -2.5395 3.4084 25 1 12.4165 -2.8723 2.5744 26 1 14.8164 -2.5230 2.5578 27 1 13.7549 -3.5604 4.4755 28 6 7.7686 3.1225 3.2457 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0446 0.5746 1.7355 35 1 5.4401 1.6103 2.4081 36 1 4.1769 2.3390 3.4287 37 1 5.9435 3.8526 1.6184 38 1 6.9082 5.8065 2.9830 39 1 6.1428 5.7107 4.6013 40 1 9.0840 4.9788 6.5343 41 1 7.6858 6.0706 6.3880 42 1 7.4396 4.3080 6.4145 43 1 9.6177 1.1335 4.3182 44 1 10.3970 1.8949 2.9107 45 1 15.1000 -0.8617 5.1462 46 1 8.0110 3.3272 2.2028 47 1 7.7384 2.0476 3.4235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278348052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = -72.602272 kcal Electronic energy + Delta-G solvation = -26603.831613 eV Core-core repulsion = 22719.214949 eV Total energy + Delta-G solvation = -3884.616664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36596 -40.66782 -38.90315 -36.84865 -35.84763 -34.60231 -33.73899 -33.37115 -31.09810 -30.24028 -28.10053 -27.67911 -26.78953 -25.70849 -23.48502 -21.84496 -21.65225 -20.80850 -20.35509 -19.56416 -18.37474 -17.85671 -17.55449 -17.09154 -16.97631 -16.89838 -16.56207 -16.06571 -15.82561 -15.64534 -15.45630 -14.74562 -14.63240 -14.41723 -14.30527 -14.21770 -14.19936 -13.84245 -13.68026 -13.51854 -13.22983 -13.17462 -13.06719 -12.92493 -12.90636 -12.58438 -12.35797 -12.05255 -11.95711 -11.72528 -11.60652 -11.17364 -11.05102 -10.90013 -10.48751 -10.29258 -10.03797 -9.76958 -9.43272 -8.69415 -8.36205 -6.14787 1.17289 1.22676 1.40618 1.43892 1.55658 1.56583 1.65772 2.02482 2.25513 2.30710 2.98020 3.08849 3.27859 3.52300 3.61269 3.81955 3.87267 3.92388 4.05651 4.11275 4.16082 4.21508 4.28144 4.35658 4.41385 4.43930 4.50162 4.57371 4.64910 4.71636 4.74859 4.78406 4.97566 5.00388 5.05280 5.14190 5.32537 5.38389 5.40034 5.50913 5.65294 5.77749 5.87524 6.18201 6.23713 6.39786 6.59279 7.04899 7.13023 7.27880 8.73263 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.002400 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.866323 B =11663.650795 C =14545.937878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.146 3.854 4 N -0.719 5.719 5 C 0.509 3.491 6 O -0.574 6.574 7 C 0.039 3.961 8 N -0.663 5.663 9 C 0.093 3.907 10 H 0.112 0.888 11 C -0.102 4.102 12 C 0.129 3.871 13 H 0.062 0.938 14 C -0.158 4.158 15 N -0.609 5.609 16 C 0.546 3.454 17 O -0.560 6.560 18 C -0.120 4.120 19 S -0.150 6.150 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.273 1.273 28 C 0.063 3.937 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.417 0.583 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.351 0.649 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.034 0.966 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.271 0.729 46 H 0.076 0.924 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.269 1.967 -7.528 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C 0.023 3.977 4 N -0.372 5.372 5 C 0.296 3.704 6 O -0.453 6.453 7 C -0.092 4.092 8 N -0.295 5.295 9 C -0.018 4.018 10 H 0.130 0.870 11 C -0.140 4.140 12 C 0.026 3.974 13 H 0.080 0.920 14 C -0.216 4.216 15 N -0.344 5.344 16 C 0.334 3.666 17 O -0.438 6.438 18 C -0.271 4.271 19 S 0.078 5.922 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.198 1.198 28 C -0.062 4.062 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.254 0.746 35 H 0.103 0.897 36 H 0.145 0.855 37 H 0.171 0.829 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.053 0.947 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -29.530 3.861 -6.569 30.497 hybrid contribution 0.691 -2.416 -1.243 2.803 sum -28.839 1.446 -7.812 29.913 Atomic orbital electron populations 1.24169 0.95741 1.03181 0.96850 1.22963 0.96371 0.97529 1.03175 1.20362 0.91594 0.96366 0.89371 1.45919 1.40390 1.20006 1.30932 1.21033 0.81240 0.81781 0.86311 1.90716 1.69194 1.36724 1.48633 1.21972 0.96543 0.92783 0.97945 1.60243 1.29656 1.32886 1.06701 1.22719 0.88089 0.96082 0.94903 0.86981 1.22641 0.92802 0.96634 1.01968 1.21743 0.95774 0.84326 0.95590 0.92013 1.22095 1.01560 1.03292 0.94615 1.48397 1.17160 1.20220 1.48670 1.19755 0.80197 0.86722 0.79944 1.90680 1.52798 1.62775 1.37550 1.23309 1.02303 0.96915 1.04557 1.85608 1.17856 1.23363 1.65416 1.23207 1.07925 1.03388 1.34702 0.89951 1.26153 0.94346 1.03330 0.95430 1.70192 1.08528 1.39858 1.36161 0.84887 0.78709 0.76176 0.78052 1.17910 1.20029 1.19829 1.23413 0.89314 0.99151 0.94312 0.86432 0.88219 0.85408 0.92131 0.91877 0.74630 0.89718 0.85536 0.82873 0.89693 0.87586 0.94697 0.89347 0.91779 0.87523 0.88077 0.91975 0.90628 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 14.32 67.79 0.97 0.01 16 2 C -0.18 -1.27 9.63 25.65 0.25 -1.02 16 3 C 0.15 1.66 6.11 85.63 0.52 2.18 16 4 N -0.72 -7.21 5.55 -466.81 -2.59 -9.80 16 5 C 0.51 7.73 7.87 87.65 0.69 8.42 16 6 O -0.57 -14.17 16.20 -3.03 -0.05 -14.22 16 7 C 0.04 0.38 6.04 85.55 0.52 0.90 16 8 N -0.66 -8.96 6.00 -488.40 -2.93 -11.89 16 9 C 0.09 1.25 3.32 46.31 0.15 1.40 16 10 H 0.11 1.27 7.92 -2.39 -0.02 1.25 16 11 C -0.10 -1.51 6.19 31.78 0.20 -1.32 16 12 C 0.13 2.93 3.48 45.34 0.16 3.08 16 13 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.16 -3.63 9.07 71.98 0.65 -2.98 16 15 N -0.61 -16.56 3.08 -788.08 -2.43 -18.99 16 16 C 0.55 21.00 7.65 87.66 0.67 21.67 16 17 O -0.56 -26.63 14.77 -3.03 -0.04 -26.68 16 18 C -0.12 -4.84 5.16 71.24 0.37 -4.48 16 19 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 20 C -0.54 -30.97 9.50 67.96 0.65 -30.32 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.69 5.49 84.86 0.47 1.15 16 23 N -0.91 -55.91 13.22 21.65 0.29 -55.62 16 24 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 C 0.06 1.14 6.28 86.86 0.55 1.69 16 29 H 0.12 0.39 8.06 -2.91 -0.02 0.37 16 30 H 0.10 0.60 7.84 -2.91 -0.02 0.57 16 31 H 0.13 0.60 8.06 -2.91 -0.02 0.57 16 32 H 0.06 0.82 7.79 -2.39 -0.02 0.80 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.42 1.71 8.46 -92.70 -0.78 0.92 16 35 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.13 0.73 8.09 -2.39 -0.02 0.71 16 37 H 0.35 5.40 8.01 -89.70 -0.72 4.68 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.25 7.84 -2.39 -0.02 1.23 16 40 H 0.03 1.09 6.75 -2.39 -0.02 1.08 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.11 3.85 7.84 -2.39 -0.02 3.83 16 44 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 45 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 46 H 0.08 1.32 7.80 -2.39 -0.02 1.30 16 47 H 0.09 1.44 7.47 -2.39 -0.02 1.42 16 Total: -1.00 -83.09 405.41 -0.62 -83.71 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -0.53 Total: 17.38 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 6.80 Total: 0.40 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -7.66 Total: -96.30 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.09 Total: -40.89 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -83.09 -0.62 -83.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.106 kcal (2) G-P(sol) polarization free energy of solvation -83.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds