Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.88448 * 2 1 4 4 C 1.54910 * 111.00282 * 123.92605 * 2 1 3 5 5 N 1.47425 * 104.83231 * 155.08241 * 4 2 1 6 6 C 1.34771 * 125.64767 * 156.13676 * 5 4 2 7 7 O 1.21278 * 120.00143 * 179.69193 * 6 5 4 8 8 C 1.50706 * 119.99931 * 359.69212 * 6 5 4 9 9 S 1.81003 * 109.46955 * 180.02562 * 8 6 5 10 10 C 1.76194 * 99.99790 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00153 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99728 * 180.02562 * 10 9 8 13 13 N 1.31627 * 120.00001 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99986 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47031 * 59.99347 * 14 12 10 16 16 H 1.48497 * 109.47081 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46938 * 299.99681 * 14 12 10 18 18 C 1.47026 * 108.70074 * 335.87083 * 5 4 2 19 19 C 1.54316 * 107.27365 * 1.05989 * 18 5 4 20 20 H 1.08994 * 110.72669 * 140.73354 * 19 18 5 21 21 N 1.46903 * 110.72173 * 263.83006 * 19 18 5 22 22 C 1.46897 * 110.99747 * 273.54817 * 21 19 18 23 23 C 1.50704 * 109.47037 * 179.97438 * 22 21 19 24 24 O 1.21275 * 120.00216 * 359.97438 * 23 22 21 25 25 N 1.34780 * 119.99767 * 179.97438 * 23 22 21 26 26 C 1.47068 * 136.06148 * 359.63300 * 25 23 22 27 27 C 1.53238 * 88.08356 * 207.19913 * 26 25 23 28 28 C 1.47067 * 136.05553 * 179.97438 * 25 23 22 29 29 H 1.08997 * 109.47161 * 183.87636 * 1 2 3 30 30 H 1.08991 * 109.46994 * 303.87731 * 1 2 3 31 31 H 1.08999 * 109.47006 * 63.87919 * 1 2 3 32 32 H 1.09001 * 110.36852 * 36.24540 * 4 2 1 33 33 H 1.08998 * 110.36449 * 273.92188 * 4 2 1 34 34 H 1.09000 * 109.46686 * 299.99326 * 8 6 5 35 35 H 1.08989 * 109.47272 * 60.00000 * 8 6 5 36 36 H 0.97003 * 119.99609 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.87531 * 120.47707 * 18 5 4 38 38 H 1.09000 * 109.87938 * 241.63960 * 18 5 4 39 39 H 1.00893 * 111.00329 * 149.59318 * 21 19 18 40 40 H 1.09001 * 109.47099 * 299.99614 * 22 21 19 41 41 H 1.08999 * 109.47407 * 59.99772 * 22 21 19 42 42 H 1.09003 * 113.46369 * 321.93179 * 26 25 23 43 43 H 1.08996 * 113.46848 * 92.37318 * 26 25 23 44 44 H 1.08992 * 114.32833 * 220.46722 * 27 26 25 45 45 H 1.09006 * 114.01581 * 87.71123 * 27 26 25 46 46 H 1.09003 * 113.47184 * 267.62785 * 28 25 23 47 47 H 1.09006 * 113.46746 * 38.06188 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4272 -1.2435 0.7728 6 6 4.4463 -1.5665 1.5934 7 8 5.5099 -1.9192 1.1296 8 6 4.2642 -1.4895 3.0875 9 16 5.8006 -1.9806 3.9086 10 6 5.3174 -1.8024 5.5936 11 1 4.3181 -1.4730 5.8369 12 6 6.2215 -2.0843 6.6084 13 7 7.4397 -2.4853 6.3119 14 14 5.7091 -1.8961 8.3948 15 1 4.5607 -2.7941 8.6776 16 1 6.8479 -2.2566 9.2771 17 1 5.3111 -0.4883 8.6499 18 6 3.4674 -1.2739 -0.6966 19 6 2.0862 -0.8075 -1.2026 20 1 2.1920 -0.1717 -2.0815 21 7 1.2245 -1.9599 -1.4978 22 6 1.4434 -2.4438 -2.8674 23 6 0.5447 -3.6240 -3.1330 24 8 -0.2041 -4.0230 -2.2665 25 7 0.5731 -4.2359 -4.3335 26 6 1.3059 -4.0575 -5.5961 27 6 0.1151 -4.6971 -6.3179 28 6 -0.1195 -5.3724 -4.9594 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5728 0.8531 31 1 -0.3633 0.4524 -0.9227 32 1 1.4519 -1.6710 1.4018 33 1 2.1560 -0.1729 2.0836 34 1 4.0121 -0.4675 3.3705 35 1 3.4597 -2.1595 3.3904 36 1 8.0714 -2.6826 7.0211 37 1 4.2427 -0.5993 -1.0601 38 1 3.6650 -2.2890 -1.0410 39 1 0.2531 -1.7337 -1.3452 40 1 1.2156 -1.6466 -3.5751 41 1 2.4840 -2.7465 -2.9838 42 1 1.4629 -3.0123 -5.8628 43 1 2.2188 -4.6500 -5.6556 44 1 0.3912 -5.3849 -7.1170 45 1 -0.6620 -3.9888 -6.6053 46 1 0.4102 -6.3185 -4.8478 47 1 -1.1722 -5.4433 -4.6857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281378330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = -14.849284 kcal Electronic energy + Delta-G solvation = -27045.569098 eV Core-core repulsion = 23163.456791 eV Total energy + Delta-G solvation = -3882.112306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73993 -40.02808 -38.37846 -37.64754 -34.72794 -32.56502 -32.37581 -30.77967 -30.11339 -28.12816 -26.73031 -26.44461 -25.77264 -25.38554 -22.74447 -22.26751 -20.09964 -19.42415 -19.17433 -17.74011 -17.42033 -16.97940 -16.89315 -16.42095 -16.14771 -15.65016 -15.04856 -14.78323 -14.75071 -14.61031 -13.96213 -13.72256 -13.59696 -13.47101 -13.32982 -13.15123 -13.08879 -12.79922 -12.54193 -12.37050 -12.29505 -12.19508 -12.06408 -11.67033 -11.42334 -11.29838 -11.16154 -10.99774 -10.98799 -10.91341 -10.72366 -10.09149 -9.77186 -9.32212 -9.17667 -9.01027 -8.79824 -8.36270 -8.17274 -6.44192 -6.16477 -3.86565 2.21395 2.39268 3.00847 3.17749 3.27309 3.30114 3.33308 3.64855 3.70667 3.80863 4.06177 4.13051 4.25550 4.38292 4.42726 4.59371 4.63731 4.78934 4.86886 4.89720 4.97384 5.05826 5.09741 5.14201 5.15978 5.18332 5.18475 5.25858 5.27501 5.37081 5.48617 5.57718 5.60771 5.67970 5.72959 5.80185 5.88547 5.98286 6.07650 6.22415 6.51662 6.57583 6.98910 7.29103 7.64304 7.79941 7.82687 8.40246 8.67051 9.28519 10.90923 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.002023 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.847624 B =13836.257704 C =14267.913630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 H 0.092 0.908 4 C 0.112 3.888 5 N -0.620 5.620 6 C 0.549 3.451 7 O -0.519 6.519 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.121 3.879 19 C 0.077 3.923 20 H 0.066 0.934 21 N -0.665 5.665 22 C 0.048 3.952 23 C 0.541 3.459 24 O -0.521 6.521 25 N -0.655 5.655 26 C 0.098 3.902 27 C -0.156 4.156 28 C 0.104 3.896 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.356 0.644 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.158 2.652 -27.607 33.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.012 4.012 5 N -0.357 5.357 6 C 0.337 3.663 7 O -0.394 6.394 8 C -0.296 4.296 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.003 4.003 19 C -0.033 4.033 20 H 0.084 0.916 21 N -0.303 5.303 22 C -0.084 4.084 23 C 0.330 3.670 24 O -0.396 6.396 25 N -0.393 5.393 26 C -0.025 4.025 27 C -0.194 4.194 28 C -0.019 4.019 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.180 0.820 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.314 1.494 -27.159 31.717 hybrid contribution -1.887 1.117 1.119 2.462 sum -18.200 2.611 -26.040 31.877 Atomic orbital electron populations 1.21756 0.93817 1.02919 1.02363 1.22501 0.96304 0.99169 0.94352 0.88931 1.22305 0.83772 0.98240 0.96852 1.48359 1.12492 1.68898 1.05930 1.19986 0.82256 0.76012 0.88031 1.90695 1.25692 1.45786 1.77201 1.23500 1.07689 1.04974 0.93463 1.85371 1.09360 1.87598 1.01130 1.22826 1.01476 1.52765 0.91186 0.90994 1.24990 0.94512 0.94593 0.99508 1.70014 1.04428 1.42450 1.33447 0.86227 0.78170 0.78723 0.82395 1.19934 1.20835 1.19962 1.21876 0.95276 1.01835 0.81266 1.22581 0.93255 0.90154 0.97332 0.91586 1.60183 1.12059 1.35381 1.22636 1.21758 1.00468 0.94978 0.91187 1.20198 0.83302 0.84275 0.79182 1.90741 1.40399 1.65785 1.42645 1.49722 1.43736 1.33320 1.12518 1.22976 0.96429 1.02066 0.81014 1.23348 0.98730 1.00754 0.96582 1.22931 0.98997 0.90673 0.89286 0.91090 0.91408 0.92401 0.90739 0.90541 0.89395 0.89289 0.92181 0.91498 0.91092 0.81980 0.92310 0.87892 0.90336 0.89388 0.88994 0.88791 0.89688 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.33 37.16 0.31 -0.74 16 2 C -0.10 -0.91 3.56 -88.46 -0.31 -1.22 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.11 1.35 6.14 -2.53 -0.02 1.34 16 5 N -0.62 -9.74 3.33 -170.52 -0.57 -10.31 16 6 C 0.55 11.33 7.87 -10.98 -0.09 11.24 16 7 O -0.52 -12.69 16.19 5.56 0.09 -12.60 16 8 C -0.15 -3.17 5.16 36.01 0.19 -2.98 16 9 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 10 C -0.53 -15.64 9.50 30.94 0.29 -15.35 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.71 13.22 55.49 0.73 -25.98 16 14 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.12 1.57 6.55 -3.07 -0.02 1.55 16 19 C 0.08 0.70 3.07 -65.88 -0.20 0.50 16 20 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 21 N -0.67 -6.57 5.83 -106.06 -0.62 -7.19 16 22 C 0.05 0.40 5.81 -4.98 -0.03 0.37 16 23 C 0.54 5.76 8.12 -10.98 -0.09 5.67 16 24 O -0.52 -7.82 16.98 5.56 0.09 -7.72 16 25 N -0.65 -5.04 3.69 -185.42 -0.68 -5.72 16 26 C 0.10 0.37 8.40 -8.65 -0.07 0.29 16 27 C -0.16 -0.42 8.48 -26.34 -0.22 -0.65 16 28 C 0.10 0.59 8.61 -8.50 -0.07 0.52 16 29 H 0.07 0.56 6.49 -51.93 -0.34 0.23 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.94 7.98 -51.93 -0.41 0.52 16 33 H 0.08 0.89 7.49 -51.93 -0.39 0.50 16 34 H 0.09 1.76 7.86 -51.92 -0.41 1.35 16 35 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 36 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.02 7.70 -51.93 -0.40 0.62 16 39 H 0.36 3.39 5.44 -39.30 -0.21 3.18 16 40 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.10 0.81 7.82 -51.93 -0.41 0.41 16 42 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 45 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -38.99 398.20 -10.21 -49.20 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.59 Total: -1.18 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.43 Total: 2.58 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -1.14 Total: -49.19 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.18 Total: -20.32 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.99 -10.21 -49.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281378330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.352 kcal (2) G-P(sol) polarization free energy of solvation -38.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds