Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.88448 * 2 1 4 4 C 1.54910 * 111.00282 * 123.92605 * 2 1 3 5 5 N 1.47425 * 104.83231 * 155.08241 * 4 2 1 6 6 C 1.34771 * 125.64767 * 156.13676 * 5 4 2 7 7 O 1.21278 * 120.00143 * 179.69193 * 6 5 4 8 8 C 1.50706 * 119.99931 * 359.69212 * 6 5 4 9 9 S 1.81003 * 109.46955 * 180.02562 * 8 6 5 10 10 C 1.76194 * 99.99790 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00153 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99728 * 180.02562 * 10 9 8 13 13 N 1.31627 * 120.00001 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99986 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47031 * 59.99347 * 14 12 10 16 16 H 1.48497 * 109.47081 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46938 * 299.99681 * 14 12 10 18 18 C 1.47026 * 108.70074 * 335.87083 * 5 4 2 19 19 C 1.54316 * 107.27365 * 1.05989 * 18 5 4 20 20 H 1.08994 * 110.72669 * 140.73354 * 19 18 5 21 21 N 1.46903 * 110.72173 * 263.83006 * 19 18 5 22 22 C 1.46897 * 110.99747 * 273.54817 * 21 19 18 23 23 C 1.50704 * 109.47037 * 179.97438 * 22 21 19 24 24 O 1.21275 * 120.00216 * 359.97438 * 23 22 21 25 25 N 1.34780 * 119.99767 * 179.97438 * 23 22 21 26 26 C 1.47068 * 136.06148 * 359.63300 * 25 23 22 27 27 C 1.53238 * 88.08356 * 207.19913 * 26 25 23 28 28 C 1.47067 * 136.05553 * 179.97438 * 25 23 22 29 29 H 1.08997 * 109.47161 * 183.87636 * 1 2 3 30 30 H 1.08991 * 109.46994 * 303.87731 * 1 2 3 31 31 H 1.08999 * 109.47006 * 63.87919 * 1 2 3 32 32 H 1.09001 * 110.36852 * 36.24540 * 4 2 1 33 33 H 1.08998 * 110.36449 * 273.92188 * 4 2 1 34 34 H 1.09000 * 109.46686 * 299.99326 * 8 6 5 35 35 H 1.08989 * 109.47272 * 60.00000 * 8 6 5 36 36 H 0.97003 * 119.99609 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.87531 * 120.47707 * 18 5 4 38 38 H 1.09000 * 109.87938 * 241.63960 * 18 5 4 39 39 H 1.00893 * 111.00329 * 149.59318 * 21 19 18 40 40 H 1.09001 * 109.47099 * 299.99614 * 22 21 19 41 41 H 1.08999 * 109.47407 * 59.99772 * 22 21 19 42 42 H 1.09003 * 113.46369 * 321.93179 * 26 25 23 43 43 H 1.08996 * 113.46848 * 92.37318 * 26 25 23 44 44 H 1.08992 * 114.32833 * 220.46722 * 27 26 25 45 45 H 1.09006 * 114.01581 * 87.71123 * 27 26 25 46 46 H 1.09003 * 113.47184 * 267.62785 * 28 25 23 47 47 H 1.09006 * 113.46746 * 38.06188 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4272 -1.2435 0.7728 6 6 4.4463 -1.5665 1.5934 7 8 5.5099 -1.9192 1.1296 8 6 4.2642 -1.4895 3.0875 9 16 5.8006 -1.9806 3.9086 10 6 5.3174 -1.8024 5.5936 11 1 4.3181 -1.4730 5.8369 12 6 6.2215 -2.0843 6.6084 13 7 7.4397 -2.4853 6.3119 14 14 5.7091 -1.8961 8.3948 15 1 4.5607 -2.7941 8.6776 16 1 6.8479 -2.2566 9.2771 17 1 5.3111 -0.4883 8.6499 18 6 3.4674 -1.2739 -0.6966 19 6 2.0862 -0.8075 -1.2026 20 1 2.1920 -0.1717 -2.0815 21 7 1.2245 -1.9599 -1.4978 22 6 1.4434 -2.4438 -2.8674 23 6 0.5447 -3.6240 -3.1330 24 8 -0.2041 -4.0230 -2.2665 25 7 0.5731 -4.2359 -4.3335 26 6 1.3059 -4.0575 -5.5961 27 6 0.1151 -4.6971 -6.3179 28 6 -0.1195 -5.3724 -4.9594 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5728 0.8531 31 1 -0.3633 0.4524 -0.9227 32 1 1.4519 -1.6710 1.4018 33 1 2.1560 -0.1729 2.0836 34 1 4.0121 -0.4675 3.3705 35 1 3.4597 -2.1595 3.3904 36 1 8.0714 -2.6826 7.0211 37 1 4.2427 -0.5993 -1.0601 38 1 3.6650 -2.2890 -1.0410 39 1 0.2531 -1.7337 -1.3452 40 1 1.2156 -1.6466 -3.5751 41 1 2.4840 -2.7465 -2.9838 42 1 1.4629 -3.0123 -5.8628 43 1 2.2188 -4.6500 -5.6556 44 1 0.3912 -5.3849 -7.1170 45 1 -0.6620 -3.9888 -6.6053 46 1 0.4102 -6.3185 -4.8478 47 1 -1.1722 -5.4433 -4.6857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281378330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = -44.063852 kcal Electronic energy + Delta-G solvation = -27046.835937 eV Core-core repulsion = 23163.456791 eV Total energy + Delta-G solvation = -3883.379145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43060 -41.06027 -39.38072 -38.66941 -35.74681 -34.59999 -33.46183 -31.74918 -31.15909 -29.26593 -27.70764 -27.34367 -27.22316 -26.35029 -23.64979 -22.82783 -20.99797 -20.56646 -19.94367 -19.58446 -18.22940 -18.12768 -17.51063 -17.42683 -17.08727 -16.89432 -16.59197 -16.33207 -16.02540 -15.48772 -15.40409 -14.80767 -14.58126 -14.53407 -14.35150 -13.94747 -13.84006 -13.63715 -13.46844 -13.40144 -13.27366 -13.11411 -13.06728 -13.02747 -12.87131 -12.63669 -12.37999 -12.22467 -11.87242 -11.77129 -11.66709 -11.62876 -11.14095 -10.98096 -10.84215 -10.31235 -9.77177 -9.69502 -9.45684 -8.69747 -8.35556 -6.14695 1.22707 1.43262 1.43668 1.52792 1.54176 1.55987 1.80476 2.10581 2.26417 2.98104 3.03843 3.19647 3.35536 3.41488 3.51459 3.60546 3.86102 3.96522 4.10503 4.20652 4.23376 4.28296 4.31849 4.37350 4.40980 4.48532 4.50625 4.51831 4.57275 4.62322 4.63685 4.69151 4.74312 4.84997 4.89491 5.00712 5.01159 5.18130 5.30972 5.32647 5.39916 5.42417 5.89255 6.18390 6.29090 6.41395 6.71032 7.04912 7.10645 7.11100 8.73622 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.002023 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.847624 B =13836.257704 C =14267.913630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.109 0.891 4 C 0.100 3.900 5 N -0.611 5.611 6 C 0.544 3.456 7 O -0.569 6.569 8 C -0.119 4.119 9 S -0.149 6.149 10 C -0.548 4.548 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 1.000 3.000 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.260 1.260 18 C 0.114 3.886 19 C 0.092 3.908 20 H 0.102 0.898 21 N -0.687 5.687 22 C 0.054 3.946 23 C 0.530 3.470 24 O -0.581 6.581 25 N -0.662 5.662 26 C 0.096 3.904 27 C -0.134 4.134 28 C 0.087 3.913 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.272 0.728 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.359 0.641 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.233 4.476 -29.023 35.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.127 0.873 4 C -0.022 4.022 5 N -0.345 5.345 6 C 0.332 3.668 7 O -0.448 6.448 8 C -0.270 4.270 9 S 0.078 5.922 10 C -0.696 4.696 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.822 3.178 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.009 4.009 19 C -0.018 4.018 20 H 0.120 0.880 21 N -0.326 5.326 22 C -0.078 4.078 23 C 0.320 3.680 24 O -0.460 6.460 25 N -0.398 5.398 26 C -0.026 4.026 27 C -0.172 4.172 28 C -0.035 4.035 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.184 0.816 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.134 0.866 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.435 3.334 -28.662 34.242 hybrid contribution -1.318 0.494 1.383 1.973 sum -19.753 3.828 -27.279 33.897 Atomic orbital electron populations 1.21716 0.92130 1.02516 1.03845 1.22507 0.97464 0.99114 0.91981 0.87256 1.22628 0.81746 0.98778 0.99059 1.48337 1.12539 1.66524 1.07079 1.19755 0.82760 0.76327 0.87935 1.90668 1.27888 1.48508 1.77741 1.23294 1.03739 1.05971 0.94008 1.85538 1.15086 1.88535 1.03013 1.23156 1.02079 1.53091 0.91229 0.90010 1.26161 0.94304 0.93729 1.04982 1.70181 1.05856 1.43426 1.35231 0.84981 0.78053 0.79422 0.75389 1.18794 1.20185 1.18456 1.22150 0.98309 1.01186 0.79293 1.22506 0.90625 0.90135 0.98581 0.88020 1.60056 1.12344 1.36036 1.24133 1.21773 0.99824 0.94990 0.91170 1.20704 0.82978 0.84905 0.79373 1.90701 1.42956 1.67628 1.44725 1.49969 1.43949 1.33270 1.12639 1.23255 0.96909 1.03686 0.78700 1.23289 0.98113 1.00476 0.95324 1.23197 0.98196 0.90889 0.91240 0.92352 0.90636 0.90304 0.91297 0.89872 0.87393 0.88265 0.91924 0.91009 0.92952 0.81613 0.88907 0.87763 0.88421 0.88332 0.86586 0.88328 0.89277 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.33 71.99 0.60 -0.97 16 2 C -0.09 -1.32 3.56 -9.40 -0.03 -1.36 16 3 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.10 2.27 6.14 86.86 0.53 2.80 16 5 N -0.61 -18.92 3.33 -811.79 -2.70 -21.62 16 6 C 0.54 22.92 7.87 87.66 0.69 23.60 16 7 O -0.57 -28.96 16.19 -3.02 -0.05 -29.01 16 8 C -0.12 -5.24 5.16 71.24 0.37 -4.87 16 9 S -0.15 -8.71 20.57 -56.49 -1.16 -9.88 16 10 C -0.55 -32.47 9.50 67.96 0.65 -31.83 16 11 H 0.08 4.51 7.80 -2.91 -0.02 4.48 16 12 C 0.01 0.76 5.49 84.86 0.47 1.23 16 13 N -0.91 -57.30 13.22 21.65 0.29 -57.01 16 14 Si 1.00 44.73 29.55 68.60 2.03 46.76 16 15 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 C 0.11 2.83 6.55 86.73 0.57 3.40 16 19 C 0.09 1.42 3.07 46.10 0.14 1.56 16 20 H 0.10 0.95 7.89 -2.39 -0.02 0.93 16 21 N -0.69 -12.51 5.83 -489.46 -2.85 -15.36 16 22 C 0.05 0.79 5.81 85.56 0.50 1.29 16 23 C 0.53 11.12 8.12 87.66 0.71 11.83 16 24 O -0.58 -18.04 16.98 -3.01 -0.05 -18.09 16 25 N -0.66 -9.55 3.69 -858.95 -3.17 -12.73 16 26 C 0.10 0.47 8.40 83.09 0.70 1.17 16 27 C -0.13 -0.39 8.48 30.85 0.26 -0.13 16 28 C 0.09 0.94 8.61 83.18 0.72 1.66 16 29 H 0.06 0.82 6.49 -2.39 -0.02 0.80 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 1.68 7.98 -2.39 -0.02 1.66 16 33 H 0.08 1.79 7.49 -2.39 -0.02 1.77 16 34 H 0.11 4.27 7.86 -2.40 -0.02 4.25 16 35 H 0.10 4.12 8.14 -2.40 -0.02 4.10 16 36 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.05 1.51 7.70 -2.39 -0.02 1.49 16 39 H 0.36 6.29 5.44 -89.70 -0.49 5.80 16 40 H 0.09 0.72 8.08 -2.39 -0.02 0.70 16 41 H 0.10 1.49 7.82 -2.39 -0.02 1.47 16 42 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -90.33 398.20 -0.33 -90.66 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.48 Total: 16.89 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.86 Total: 9.39 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -8.44 Total: -106.72 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.10 Total: -47.10 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.88 kcal Total: -90.33 -0.33 -90.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281378330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.594 kcal (2) G-P(sol) polarization free energy of solvation -90.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds