Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.06740 * 2 1 4 4 C 1.53988 * 109.91608 * 238.79479 * 2 1 3 5 5 H 1.08997 * 110.39104 * 120.46445 * 4 2 1 6 6 C 1.50703 * 110.31340 * 358.34024 * 4 2 1 7 7 O 1.21281 * 119.99619 * 276.30709 * 6 4 2 8 8 N 1.34775 * 119.99896 * 96.29729 * 6 4 2 9 9 C 1.47582 * 134.48966 * 179.97438 * 8 6 4 10 10 C 1.53949 * 86.11539 * 155.36331 * 9 8 6 11 11 N 1.46500 * 113.74121 * 137.95107 * 10 9 8 12 12 C 1.34778 * 119.99803 * 156.92780 * 11 10 9 13 13 O 1.21283 * 120.00100 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99797 * 180.02562 * 12 11 10 15 15 S 1.80997 * 109.46933 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99947 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00272 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99966 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99924 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99988 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47257 * 269.99393 * 20 18 16 22 22 H 1.48497 * 109.47059 * 30.00077 * 20 18 16 23 23 H 1.48504 * 109.46826 * 149.99870 * 20 18 16 24 24 C 1.47807 * 134.45821 * 359.87648 * 8 6 4 25 25 C 1.54604 * 105.14092 * 239.42278 * 4 2 1 26 26 C 1.54938 * 102.92011 * 338.04473 * 25 4 2 27 27 N 1.47903 * 109.91546 * 121.20538 * 2 1 3 28 28 C 1.46894 * 111.00042 * 265.19875 * 27 2 1 29 29 H 1.09000 * 109.47143 * 184.08019 * 1 2 3 30 30 H 1.08997 * 109.47426 * 304.08292 * 1 2 3 31 31 H 1.09002 * 109.47187 * 64.08297 * 1 2 3 32 32 H 1.08998 * 113.76975 * 41.06769 * 9 8 6 33 33 H 1.08994 * 113.87391 * 269.67700 * 9 8 6 34 34 H 1.08992 * 113.74339 * 269.15807 * 10 9 8 35 35 H 0.97002 * 120.00144 * 336.92743 * 11 10 9 36 36 H 1.09003 * 109.46835 * 59.99969 * 14 12 11 37 37 H 1.08996 * 109.47135 * 299.99607 * 14 12 11 38 38 H 0.97000 * 119.99674 * 180.02562 * 19 18 16 39 39 H 1.08997 * 113.77288 * 90.37018 * 24 8 6 40 40 H 1.09003 * 113.83682 * 318.91147 * 24 8 6 41 41 H 1.09001 * 110.71795 * 96.40260 * 25 4 2 42 42 H 1.08996 * 110.72389 * 219.51141 * 25 4 2 43 43 H 1.08996 * 110.66703 * 155.84417 * 26 25 4 44 44 H 1.08994 * 110.66720 * 278.98150 * 26 25 4 45 45 H 1.09006 * 109.47129 * 302.72693 * 28 27 2 46 46 H 1.09000 * 109.47486 * 62.72760 * 28 27 2 47 47 H 1.09004 * 109.47205 * 182.72852 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 2.6709 -0.0905 -1.8491 6 6 0.9046 -1.2893 -2.0494 7 8 0.3958 -2.3488 -1.7503 8 7 0.4414 -0.5940 -3.1070 9 6 -0.6325 -0.8092 -4.0962 10 6 -0.6442 0.7215 -4.2608 11 7 -0.7615 1.1641 -5.6524 12 6 -1.2424 2.3921 -5.9307 13 8 -1.5784 3.1304 -5.0291 14 6 -1.3636 2.8472 -7.3622 15 16 -2.0366 4.5268 -7.4063 16 6 -2.0696 4.7976 -9.1470 17 1 -1.7301 4.0245 -9.8203 18 6 -2.5330 6.0042 -9.6530 19 7 -2.5581 6.2063 -10.9535 20 14 -3.1209 7.3412 -8.4885 21 1 -4.5747 7.1736 -8.2360 22 1 -2.3807 7.2404 -7.2051 23 1 -2.8748 8.6724 -9.0988 24 6 0.8045 0.6913 -3.7403 25 6 2.9059 -1.9118 -0.6762 26 6 3.2681 -1.4186 0.7473 27 7 2.0338 -0.7205 1.1894 28 6 2.3211 0.2122 2.2873 29 1 -0.3633 -1.0251 0.0731 30 1 -0.3634 0.5759 0.8511 31 1 -0.3634 0.4492 -0.9243 32 1 -1.5502 -1.2119 -3.6677 33 1 -0.3092 -1.3446 -4.9888 34 1 -1.3401 1.2293 -3.5932 35 1 -0.4931 0.5734 -6.3735 36 1 -2.0303 2.1747 -7.9020 37 1 -0.3797 2.8372 -7.8312 38 1 -2.8816 7.0496 -11.3071 39 1 1.5524 0.5974 -4.5276 40 1 1.0321 1.4845 -3.0281 41 1 2.3213 -2.8305 -0.6290 42 1 3.8036 -2.0578 -1.2768 43 1 3.4887 -2.2616 1.4019 44 1 4.1096 -0.7268 0.7121 45 1 3.0411 0.9584 1.9512 46 1 1.3999 0.7081 2.5932 47 1 2.7354 -0.3378 3.1323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284881413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = -24.711255 kcal Electronic energy + Delta-G solvation = -27171.881545 eV Core-core repulsion = 23289.341592 eV Total energy + Delta-G solvation = -3882.539954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21415 -39.94519 -38.72806 -37.54958 -33.90143 -32.82308 -32.48257 -31.83029 -30.18273 -28.53531 -26.95765 -26.36061 -25.65906 -25.30631 -22.86682 -21.52360 -20.92976 -20.74024 -18.87282 -17.95714 -17.60497 -17.03350 -16.52727 -16.38824 -16.27230 -15.50495 -15.11480 -15.07025 -14.85939 -14.79750 -14.32974 -13.78087 -13.63916 -13.48649 -13.30546 -13.15129 -12.95390 -12.85938 -12.83514 -12.50262 -12.38229 -12.22239 -12.02086 -11.75290 -11.60773 -11.56703 -11.31721 -11.28479 -11.14453 -11.04994 -10.67754 -10.11037 -9.89859 -9.65769 -9.25489 -9.06535 -9.03731 -8.89771 -8.56712 -6.97866 -6.33307 -4.05839 2.25410 2.27551 2.73406 2.76695 3.25433 3.30323 3.46154 3.49076 3.58426 3.83872 4.08527 4.10594 4.20523 4.28645 4.52123 4.64420 4.67318 4.73819 4.76491 4.83149 4.94137 4.97468 4.98181 5.03263 5.05756 5.09564 5.17857 5.20745 5.25262 5.29982 5.36544 5.43512 5.48820 5.54044 5.64712 5.67181 5.71247 5.81211 5.93219 6.01804 6.31963 6.42831 6.58420 7.26620 7.42265 7.83361 7.89583 8.31119 8.37178 9.12644 10.75812 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.001936 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.343635 B =14462.582580 C =15096.534243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 H 0.061 0.939 4 C -0.114 4.114 5 H 0.093 0.907 6 C 0.558 3.442 7 O -0.531 6.531 8 N -0.645 5.645 9 C 0.100 3.900 10 C 0.119 3.881 11 N -0.727 5.727 12 C 0.534 3.466 13 O -0.514 6.514 14 C -0.125 4.125 15 S -0.141 6.141 16 C -0.523 4.523 17 H 0.089 0.911 18 C 0.095 3.905 19 N -0.879 5.879 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.235 1.235 23 H -0.274 1.274 24 C 0.084 3.916 25 C -0.112 4.112 26 C 0.036 3.964 27 N -0.515 5.515 28 C 0.015 3.985 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.404 0.596 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.271 0.729 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.028 0.972 46 H 0.070 0.930 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.580 -15.893 20.738 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 H 0.079 0.921 4 C -0.136 4.136 5 H 0.111 0.889 6 C 0.348 3.652 7 O -0.407 6.407 8 N -0.382 5.382 9 C -0.023 4.023 10 C 0.012 3.988 11 N -0.381 5.381 12 C 0.321 3.679 13 O -0.388 6.388 14 C -0.276 4.276 15 S 0.085 5.915 16 C -0.670 4.670 17 H 0.107 0.893 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.159 1.159 23 H -0.199 1.199 24 C -0.040 4.040 25 C -0.150 4.150 26 C -0.091 4.091 27 N -0.239 5.239 28 C -0.133 4.133 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.146 0.854 35 H 0.239 0.761 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.089 0.911 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.379 -15.574 22.636 29.739 hybrid contribution 0.962 0.264 -1.588 1.875 sum 12.341 -15.309 21.049 28.805 Atomic orbital electron populations 1.21959 0.93321 1.03659 1.01763 1.22239 0.97005 0.95500 0.88073 0.92052 1.22221 0.95688 0.99184 0.96511 0.88908 1.19833 0.83426 0.83180 0.78766 1.90712 1.59118 1.22201 1.68643 1.49825 1.36537 1.23714 1.28102 1.23502 0.91572 0.95698 0.91533 1.22918 0.96783 0.94163 0.84959 1.45889 1.67761 1.17260 1.07225 1.20372 0.75591 0.80681 0.91277 1.90714 1.47076 1.53207 1.47807 1.23289 1.05753 1.03694 0.94858 1.84808 1.83973 1.10928 1.11765 1.22302 1.50320 1.05555 0.88829 0.89342 1.24723 0.93954 0.97679 0.94984 1.69939 1.44826 1.25554 1.11235 0.86733 0.80868 0.81458 0.82768 1.19191 1.15937 1.19933 1.23893 0.98453 0.85014 0.96626 1.22532 0.99139 0.98358 0.94985 1.23240 0.91257 0.98607 0.96045 1.64713 1.26578 1.26352 1.06301 1.22537 1.00957 0.95107 0.94715 0.90681 0.92241 0.92056 0.89081 0.89202 0.85449 0.76144 0.88294 0.88285 0.91902 0.88985 0.89292 0.88674 0.90536 0.89471 0.93508 0.95296 0.91109 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.37 37.16 0.31 -1.13 16 2 C 0.08 0.68 3.09 -66.64 -0.21 0.48 16 3 H 0.06 0.47 7.69 -51.93 -0.40 0.07 16 4 C -0.11 -0.95 3.24 -90.41 -0.29 -1.24 16 5 H 0.09 0.62 7.78 -51.93 -0.40 0.22 16 6 C 0.56 5.91 4.95 -10.98 -0.05 5.85 16 7 O -0.53 -7.50 15.63 5.56 0.09 -7.41 16 8 N -0.65 -5.74 3.24 -178.32 -0.58 -6.32 16 9 C 0.10 0.80 8.59 -2.96 -0.03 0.77 16 10 C 0.12 1.07 4.40 -70.13 -0.31 0.76 16 11 N -0.73 -7.29 5.37 -55.33 -0.30 -7.59 16 12 C 0.53 8.23 7.85 -10.98 -0.09 8.14 16 13 O -0.51 -9.92 15.48 5.55 0.09 -9.83 16 14 C -0.13 -2.19 6.16 36.01 0.22 -1.97 16 15 S -0.14 -3.40 18.55 -107.50 -1.99 -5.39 16 16 C -0.52 -14.56 10.04 30.94 0.31 -14.25 16 17 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 18 C 0.10 2.72 5.50 -17.43 -0.10 2.63 16 19 N -0.88 -25.97 13.97 55.49 0.78 -25.20 16 20 Si 0.86 21.23 27.74 -169.99 -4.71 16.52 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.08 0.64 8.16 -2.83 -0.02 0.61 16 25 C -0.11 -0.87 6.56 -24.87 -0.16 -1.03 16 26 C 0.04 0.25 6.56 -1.90 -0.01 0.24 16 27 N -0.52 -4.35 5.18 -230.79 -1.20 -5.55 16 28 C 0.02 0.10 9.41 60.06 0.57 0.67 16 29 H 0.07 0.90 6.99 -51.93 -0.36 0.53 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 7.12 -51.93 -0.37 0.22 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 34 H 0.13 1.38 7.51 -51.93 -0.39 0.99 16 35 H 0.40 2.87 8.71 -40.82 -0.36 2.52 16 36 H 0.10 1.61 8.14 -51.91 -0.42 1.18 16 37 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.95 6.94 -51.93 -0.36 0.59 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.28 8.00 -51.93 -0.42 -0.14 16 45 H 0.03 0.17 7.99 -51.93 -0.41 -0.24 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -35.06 393.57 -9.46 -44.52 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.70 Total: -0.21 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 0.14 Total: 0.53 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -1.30 Total: -44.65 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.17 Total: -17.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.52 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.06 -9.46 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284881413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.807 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds