Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.32749 * 2 1 4 4 C 1.54906 * 110.37277 * 122.25238 * 2 1 3 5 5 C 1.55259 * 101.59374 * 155.81906 * 4 2 1 6 6 C 1.54316 * 103.08891 * 324.48589 * 5 4 2 7 7 N 1.47442 * 107.23145 * 22.20889 * 6 5 4 8 8 C 1.46902 * 111.00195 * 123.25462 * 7 6 5 9 9 C 1.50702 * 109.46969 * 69.15487 * 8 7 6 10 10 O 1.21279 * 119.99758 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99787 * 179.97438 * 9 8 7 12 12 C 1.47062 * 136.05824 * 359.63446 * 11 9 8 13 13 C 1.53762 * 87.88859 * 152.95980 * 12 11 9 14 14 N 1.46497 * 114.08559 * 139.77808 * 13 12 11 15 15 C 1.34777 * 119.99944 * 111.56917 * 14 13 12 16 16 O 1.21283 * 119.99633 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00201 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47023 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99688 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99809 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99736 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00183 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46917 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47072 * 119.99929 * 23 21 19 26 26 H 1.48504 * 109.46879 * 239.99647 * 23 21 19 27 27 C 1.47074 * 136.05294 * 179.97438 * 11 9 8 28 28 H 1.09001 * 109.47002 * 180.69865 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.70303 * 1 2 3 30 30 H 1.09000 * 109.47050 * 60.70132 * 1 2 3 31 31 H 1.08997 * 110.99012 * 273.99236 * 4 2 1 32 32 H 1.08997 * 110.99070 * 37.81226 * 4 2 1 33 33 H 1.09009 * 110.74090 * 206.05143 * 5 4 2 34 34 H 1.08997 * 110.60857 * 82.86379 * 5 4 2 35 35 H 1.08997 * 109.89396 * 262.79851 * 6 5 4 36 36 H 1.09004 * 110.01933 * 141.68881 * 6 5 4 37 37 H 1.09001 * 109.47287 * 189.15653 * 8 7 6 38 38 H 1.09000 * 109.47053 * 309.15673 * 8 7 6 39 39 H 1.08996 * 113.46960 * 267.68980 * 12 11 9 40 40 H 1.08999 * 113.46830 * 38.13733 * 12 11 9 41 41 H 1.08996 * 114.57549 * 272.66462 * 13 12 11 42 42 H 0.96998 * 120.00137 * 291.55825 * 14 13 12 43 43 H 1.08999 * 109.46815 * 299.99336 * 17 15 14 44 44 H 1.08998 * 109.47249 * 59.99377 * 17 15 14 45 45 H 0.96997 * 119.99969 * 180.02562 * 22 21 19 46 46 H 1.08992 * 113.46724 * 321.86942 * 27 11 9 47 47 H 1.08998 * 113.46564 * 92.25279 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0693 -0.7749 1.2281 5 6 3.4786 -1.2002 0.7345 6 6 3.2536 -1.4799 -0.7663 7 7 2.0448 -0.7396 -1.1721 8 6 2.3358 0.1741 -2.2849 9 6 2.6203 -0.6255 -3.5302 10 8 2.5837 -1.8372 -3.4943 11 7 2.9143 0.0060 -4.6840 12 6 3.0450 1.4035 -5.1227 13 6 4.0223 0.9131 -6.2038 14 7 3.8573 1.5717 -7.5020 15 6 4.8136 2.4022 -7.9626 16 8 5.8105 2.6047 -7.3021 17 6 4.6437 3.0802 -9.2978 18 16 6.0847 4.1232 -9.6324 19 6 5.6326 4.7734 -11.2066 20 1 4.6959 4.4858 -11.6608 21 6 6.4809 5.6542 -11.8631 22 7 7.6233 6.0035 -11.3101 23 14 6.0014 6.3440 -13.5316 24 1 4.6792 5.7989 -13.9311 25 1 5.9231 7.8247 -13.4511 26 1 7.0212 5.9564 -14.5391 27 6 3.2397 -0.3994 -6.0598 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3633 0.5247 0.8836 30 1 -0.3633 0.5029 -0.8962 31 1 2.1388 -0.1249 2.1002 32 1 1.4516 -1.6473 1.4414 33 1 3.8120 -2.1016 1.2488 34 1 4.1942 -0.3896 0.8725 35 1 3.1057 -2.5478 -0.9264 36 1 4.1114 -1.1339 -1.3431 37 1 1.4762 0.8218 -2.4575 38 1 3.2055 0.7828 -2.0374 39 1 2.1226 1.8194 -5.5280 40 1 3.5085 2.0507 -4.3781 41 1 5.0615 0.8512 -5.8811 42 1 3.0599 1.4099 -8.0301 43 1 4.5515 2.3258 -10.0791 44 1 3.7453 3.6970 -9.2803 45 1 8.2159 6.6193 -11.7688 46 1 3.8687 -1.2878 -6.1133 47 1 2.3684 -0.4601 -6.7120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284883411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = -23.175196 kcal Electronic energy + Delta-G solvation = -26438.645963 eV Core-core repulsion = 22556.172618 eV Total energy + Delta-G solvation = -3882.473345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96134 -39.80800 -38.81288 -37.63895 -33.81918 -32.72636 -32.47199 -31.75804 -30.24634 -28.68199 -26.77494 -26.20811 -25.60740 -25.45429 -22.29158 -21.52548 -20.66005 -20.45461 -19.20594 -17.90436 -17.35331 -16.98591 -16.87676 -16.38494 -16.04013 -15.63232 -15.05828 -14.94901 -14.84341 -14.38316 -14.27669 -13.95995 -13.64606 -13.56834 -13.31764 -13.05519 -13.02599 -12.96351 -12.58678 -12.50791 -12.35393 -12.14217 -12.04652 -11.60364 -11.50160 -11.33486 -11.13649 -11.10361 -11.06884 -11.06809 -10.80062 -10.11886 -9.85679 -9.54627 -9.15995 -9.10577 -9.02234 -8.71099 -8.29642 -6.55680 -6.26349 -3.97426 2.26141 2.36043 2.88277 2.99488 3.18676 3.25466 3.29599 3.48717 3.64811 3.97096 4.15060 4.16013 4.18834 4.33487 4.54000 4.56722 4.75846 4.80481 4.85992 4.88626 4.96658 5.02495 5.05086 5.05853 5.09285 5.15931 5.26005 5.31934 5.35209 5.39362 5.44802 5.51026 5.52030 5.57102 5.70033 5.79775 5.81876 5.88954 5.90596 6.06404 6.41389 6.55233 6.59571 7.35513 7.52733 7.55962 7.90643 8.30909 8.44023 9.19409 10.81101 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029998 B = 0.001603 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.170134 B =17461.426805 C =17566.674628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.056 0.944 4 C -0.123 4.123 5 C -0.146 4.146 6 C 0.051 3.949 7 N -0.510 5.510 8 C 0.040 3.960 9 C 0.547 3.453 10 O -0.518 6.518 11 N -0.648 5.648 12 C 0.081 3.919 13 C 0.118 3.882 14 N -0.726 5.726 15 C 0.536 3.464 16 O -0.513 6.513 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.074 0.926 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.097 3.903 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.132 0.868 42 H 0.402 0.598 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.268 0.732 46 H 0.086 0.914 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.485 -12.268 21.410 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.042 4.042 3 H 0.074 0.926 4 C -0.161 4.161 5 C -0.184 4.184 6 C -0.076 4.076 7 N -0.235 5.235 8 C -0.092 4.092 9 C 0.336 3.664 10 O -0.393 6.393 11 N -0.386 5.386 12 C -0.044 4.044 13 C 0.011 3.989 14 N -0.380 5.380 15 C 0.323 3.677 16 O -0.386 6.386 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.027 4.027 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.150 0.850 42 H 0.237 0.763 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.104 0.896 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.089 -12.954 22.559 29.121 hybrid contribution -1.296 0.853 -1.967 2.506 sum -14.385 -12.101 20.592 27.882 Atomic orbital electron populations 1.21707 0.93645 1.02621 1.01339 1.22620 0.96307 0.96024 0.89205 0.92563 1.22762 0.96118 1.00406 0.96855 1.22860 0.97288 1.01912 0.96363 1.22778 0.90556 1.00354 0.93907 1.63242 1.29821 1.24739 1.05721 1.22065 1.02213 0.94536 0.90369 1.20024 0.75800 0.87926 0.82632 1.90722 1.50430 1.13729 1.84374 1.49326 1.70748 1.09959 1.08610 1.23711 0.99654 0.84361 0.96654 1.22689 1.00679 0.91684 0.83875 1.45843 1.23696 1.48226 1.20277 1.20402 0.82134 0.77843 0.87352 1.90716 1.28613 1.60865 1.58385 1.23542 1.07771 1.03483 0.95706 1.85419 1.19739 1.53343 1.24847 1.22905 1.08525 1.32282 1.04701 0.90809 1.24996 0.94482 0.95557 0.98535 1.70023 1.09548 1.32500 1.38173 0.86111 0.78591 0.78695 0.82068 1.19603 1.20556 1.20551 1.23324 0.98667 0.98773 0.81937 0.91765 0.92249 0.92723 0.90693 0.90370 0.90520 0.91513 0.89781 0.92963 0.87957 0.91615 0.89108 0.89720 0.84997 0.76283 0.88988 0.89004 0.92193 0.89592 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.59 37.16 0.36 -0.50 16 2 C 0.07 0.46 3.01 -66.18 -0.20 0.26 16 3 H 0.06 0.36 7.81 -51.93 -0.41 -0.04 16 4 C -0.12 -0.75 6.51 -24.53 -0.16 -0.91 16 5 C -0.15 -0.97 6.94 -24.85 -0.17 -1.14 16 6 C 0.05 0.47 5.61 -2.84 -0.02 0.45 16 7 N -0.51 -4.72 4.52 -224.81 -1.02 -5.74 16 8 C 0.04 0.34 4.85 -4.97 -0.02 0.32 16 9 C 0.55 6.21 7.70 -10.98 -0.08 6.13 16 10 O -0.52 -7.79 16.28 5.56 0.09 -7.70 16 11 N -0.65 -6.28 3.69 -185.05 -0.68 -6.96 16 12 C 0.08 0.65 8.24 -8.36 -0.07 0.58 16 13 C 0.12 1.16 4.63 -67.68 -0.31 0.85 16 14 N -0.73 -7.92 5.38 -53.49 -0.29 -8.21 16 15 C 0.54 8.87 7.85 -10.99 -0.09 8.78 16 16 O -0.51 -10.61 15.45 5.55 0.09 -10.53 16 17 C -0.15 -2.85 6.16 36.01 0.22 -2.63 16 18 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 19 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 23 Si 0.92 20.92 29.55 -169.99 -5.02 15.89 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.10 0.85 8.38 -8.50 -0.07 0.78 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 33 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.51 7.30 -51.93 -0.38 0.13 16 37 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.07 0.50 7.98 -51.93 -0.41 0.08 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.13 1.57 7.45 -51.93 -0.39 1.18 16 42 H 0.40 3.15 8.76 -40.82 -0.36 2.80 16 43 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 44 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.62 8.13 -51.93 -0.42 0.20 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -35.69 401.83 -10.50 -46.18 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.82 Total: -0.79 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.42 Total: 0.43 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -1.25 Total: -45.78 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.18 Total: -18.22 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.69 -10.50 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284883411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.007 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds