Wall clock time and date at job start Sat Apr 11 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.32749 * 2 1 4 4 C 1.54906 * 110.37277 * 122.25238 * 2 1 3 5 5 C 1.55259 * 101.59374 * 155.81906 * 4 2 1 6 6 C 1.54316 * 103.08891 * 324.48589 * 5 4 2 7 7 N 1.47442 * 107.23145 * 22.20889 * 6 5 4 8 8 C 1.46902 * 111.00195 * 123.25462 * 7 6 5 9 9 C 1.50702 * 109.46969 * 69.15487 * 8 7 6 10 10 O 1.21279 * 119.99758 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99787 * 179.97438 * 9 8 7 12 12 C 1.47062 * 136.05824 * 359.63446 * 11 9 8 13 13 C 1.53762 * 87.88859 * 152.95980 * 12 11 9 14 14 N 1.46497 * 114.08559 * 139.77808 * 13 12 11 15 15 C 1.34777 * 119.99944 * 111.56917 * 14 13 12 16 16 O 1.21283 * 119.99633 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00201 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47023 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99688 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99809 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99736 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00183 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46917 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47072 * 119.99929 * 23 21 19 26 26 H 1.48504 * 109.46879 * 239.99647 * 23 21 19 27 27 C 1.47074 * 136.05294 * 179.97438 * 11 9 8 28 28 H 1.09001 * 109.47002 * 180.69865 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.70303 * 1 2 3 30 30 H 1.09000 * 109.47050 * 60.70132 * 1 2 3 31 31 H 1.08997 * 110.99012 * 273.99236 * 4 2 1 32 32 H 1.08997 * 110.99070 * 37.81226 * 4 2 1 33 33 H 1.09009 * 110.74090 * 206.05143 * 5 4 2 34 34 H 1.08997 * 110.60857 * 82.86379 * 5 4 2 35 35 H 1.08997 * 109.89396 * 262.79851 * 6 5 4 36 36 H 1.09004 * 110.01933 * 141.68881 * 6 5 4 37 37 H 1.09001 * 109.47287 * 189.15653 * 8 7 6 38 38 H 1.09000 * 109.47053 * 309.15673 * 8 7 6 39 39 H 1.08996 * 113.46960 * 267.68980 * 12 11 9 40 40 H 1.08999 * 113.46830 * 38.13733 * 12 11 9 41 41 H 1.08996 * 114.57549 * 272.66462 * 13 12 11 42 42 H 0.96998 * 120.00137 * 291.55825 * 14 13 12 43 43 H 1.08999 * 109.46815 * 299.99336 * 17 15 14 44 44 H 1.08998 * 109.47249 * 59.99377 * 17 15 14 45 45 H 0.96997 * 119.99969 * 180.02562 * 22 21 19 46 46 H 1.08992 * 113.46724 * 321.86942 * 27 11 9 47 47 H 1.08998 * 113.46564 * 92.25279 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0693 -0.7749 1.2281 5 6 3.4786 -1.2002 0.7345 6 6 3.2536 -1.4799 -0.7663 7 7 2.0448 -0.7396 -1.1721 8 6 2.3358 0.1741 -2.2849 9 6 2.6203 -0.6255 -3.5302 10 8 2.5837 -1.8372 -3.4943 11 7 2.9143 0.0060 -4.6840 12 6 3.0450 1.4035 -5.1227 13 6 4.0223 0.9131 -6.2038 14 7 3.8573 1.5717 -7.5020 15 6 4.8136 2.4022 -7.9626 16 8 5.8105 2.6047 -7.3021 17 6 4.6437 3.0802 -9.2978 18 16 6.0847 4.1232 -9.6324 19 6 5.6326 4.7734 -11.2066 20 1 4.6959 4.4858 -11.6608 21 6 6.4809 5.6542 -11.8631 22 7 7.6233 6.0035 -11.3101 23 14 6.0014 6.3440 -13.5316 24 1 4.6792 5.7989 -13.9311 25 1 5.9231 7.8247 -13.4511 26 1 7.0212 5.9564 -14.5391 27 6 3.2397 -0.3994 -6.0598 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3633 0.5247 0.8836 30 1 -0.3633 0.5029 -0.8962 31 1 2.1388 -0.1249 2.1002 32 1 1.4516 -1.6473 1.4414 33 1 3.8120 -2.1016 1.2488 34 1 4.1942 -0.3896 0.8725 35 1 3.1057 -2.5478 -0.9264 36 1 4.1114 -1.1339 -1.3431 37 1 1.4762 0.8218 -2.4575 38 1 3.2055 0.7828 -2.0374 39 1 2.1226 1.8194 -5.5280 40 1 3.5085 2.0507 -4.3781 41 1 5.0615 0.8512 -5.8811 42 1 3.0599 1.4099 -8.0301 43 1 4.5515 2.3258 -10.0791 44 1 3.7453 3.6970 -9.2803 45 1 8.2159 6.6193 -11.7688 46 1 3.8687 -1.2878 -6.1133 47 1 2.3684 -0.4601 -6.7120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284883411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:14 Heat of formation + Delta-G solvation = -49.728090 kcal Electronic energy + Delta-G solvation = -26439.797383 eV Core-core repulsion = 22556.172618 eV Total energy + Delta-G solvation = -3883.624765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81492 -40.66080 -39.83600 -38.57523 -34.96242 -34.55796 -33.38128 -32.30444 -31.40859 -29.78501 -27.69235 -27.43841 -26.85354 -26.16603 -23.19705 -22.14948 -21.82101 -21.03255 -20.09418 -19.71188 -18.20694 -18.00751 -17.58653 -17.54694 -16.86208 -16.82974 -16.46568 -16.22833 -16.12298 -15.64971 -14.89480 -14.86670 -14.74920 -14.58697 -14.27594 -14.21363 -13.83912 -13.69792 -13.63239 -13.45316 -13.21127 -13.13347 -12.98221 -12.90250 -12.67677 -12.57653 -12.21171 -12.19169 -12.06274 -11.69405 -11.65027 -11.60338 -11.13997 -11.11039 -10.85522 -10.23482 -10.15314 -9.85784 -9.36023 -8.63284 -8.33009 -6.10038 1.25475 1.42830 1.43573 1.49975 1.55329 1.58221 1.68072 2.28527 2.37445 2.86993 3.01689 3.21578 3.34622 3.40624 3.64266 3.73361 3.80871 3.94940 3.98597 4.09219 4.21411 4.24679 4.28875 4.35125 4.37245 4.44566 4.50507 4.50889 4.57094 4.57596 4.68103 4.79205 4.85138 4.91122 4.91804 4.98538 5.06802 5.14773 5.31333 5.40711 5.42196 5.44988 5.89885 6.02409 6.22280 6.46118 6.60163 7.06446 7.09210 7.23540 8.76229 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029998 B = 0.001603 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.170134 B =17461.426805 C =17566.674628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.120 4.120 5 C -0.141 4.141 6 C 0.052 3.948 7 N -0.530 5.530 8 C 0.044 3.956 9 C 0.542 3.458 10 O -0.564 6.564 11 N -0.650 5.650 12 C 0.092 3.908 13 C 0.113 3.887 14 N -0.696 5.696 15 C 0.541 3.459 16 O -0.561 6.561 17 C -0.131 4.131 18 S -0.153 6.153 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.997 3.003 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.276 1.276 27 C 0.100 3.900 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.423 0.577 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.270 0.730 46 H 0.076 0.924 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 -11.747 21.340 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.044 4.044 3 H 0.085 0.915 4 C -0.157 4.157 5 C -0.179 4.179 6 C -0.075 4.075 7 N -0.255 5.255 8 C -0.087 4.087 9 C 0.333 3.667 10 O -0.442 6.442 11 N -0.387 5.387 12 C -0.032 4.032 13 C 0.006 3.994 14 N -0.350 5.350 15 C 0.327 3.673 16 O -0.439 6.439 17 C -0.282 4.282 18 S 0.074 5.926 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.202 1.202 27 C -0.023 4.023 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.261 0.739 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.794 -12.445 22.487 30.166 hybrid contribution -0.532 0.584 -1.897 2.055 sum -16.327 -11.861 20.590 28.830 Atomic orbital electron populations 1.21690 0.93155 1.02029 1.02094 1.22732 0.96648 0.96377 0.88604 0.91491 1.22773 0.95300 1.00525 0.97151 1.22832 0.98056 1.02488 0.94521 1.22673 0.90276 0.99022 0.95561 1.63200 1.29863 1.25660 1.06796 1.22085 1.03427 0.94167 0.88987 1.20552 0.75028 0.87612 0.83542 1.90700 1.52693 1.15705 1.85089 1.49351 1.69841 1.10876 1.08615 1.23764 1.00033 0.83566 0.95801 1.22638 1.00242 0.92838 0.83658 1.45448 1.22879 1.46120 1.20603 1.20058 0.82392 0.78350 0.86451 1.90713 1.30845 1.62873 1.59428 1.23385 1.04395 1.02876 0.97527 1.85597 1.25590 1.55932 1.25471 1.23253 1.08859 1.32232 1.04857 0.89758 1.26097 0.94294 0.95880 1.02868 1.70186 1.10981 1.33471 1.40187 0.84931 0.78803 0.77861 0.76517 1.17937 1.20050 1.20190 1.23395 0.99284 0.97528 0.82092 0.93041 0.90521 0.92891 0.88815 0.90768 0.89960 0.90756 0.92205 0.94188 0.86056 0.90443 0.86430 0.88962 0.87331 0.73890 0.87015 0.86649 0.92075 0.90557 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.59 71.98 0.69 -0.75 16 2 C 0.06 0.78 3.01 45.39 0.14 0.92 16 3 H 0.07 0.69 7.81 -2.39 -0.02 0.67 16 4 C -0.12 -1.26 6.51 32.02 0.21 -1.05 16 5 C -0.14 -1.75 6.94 31.82 0.22 -1.53 16 6 C 0.05 0.98 5.61 86.65 0.49 1.46 16 7 N -0.53 -9.48 4.52 -865.16 -3.91 -13.39 16 8 C 0.04 0.71 4.85 85.56 0.42 1.12 16 9 C 0.54 11.95 7.70 87.66 0.67 12.63 16 10 O -0.56 -17.27 16.28 -3.03 -0.05 -17.32 16 11 N -0.65 -11.52 3.69 -857.76 -3.16 -14.68 16 12 C 0.09 1.23 8.24 83.28 0.69 1.92 16 13 C 0.11 2.04 4.63 45.55 0.21 2.25 16 14 N -0.70 -13.43 5.38 -441.54 -2.38 -15.80 16 15 C 0.54 17.25 7.85 87.66 0.69 17.93 16 16 O -0.56 -23.50 15.45 -3.04 -0.05 -23.55 16 17 C -0.13 -4.62 6.16 71.24 0.44 -4.18 16 18 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 19 C -0.54 -29.95 9.50 67.95 0.65 -29.30 16 20 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 21 C 0.01 0.74 5.49 84.86 0.47 1.20 16 22 N -0.91 -54.86 13.22 21.65 0.29 -54.57 16 23 Si 1.00 42.49 29.55 68.60 2.03 44.52 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 27 C 0.10 1.58 8.38 83.18 0.70 2.27 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 0.81 7.30 -2.39 -0.02 0.79 16 37 H 0.12 1.44 8.08 -2.39 -0.02 1.42 16 38 H 0.08 1.05 7.98 -2.39 -0.02 1.03 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 2.58 7.45 -2.39 -0.02 2.56 16 42 H 0.42 4.96 8.76 -92.71 -0.81 4.15 16 43 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 44 H 0.12 3.56 8.14 -2.40 -0.02 3.54 16 45 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.12 1.24 8.13 -2.39 -0.02 1.22 16 Total: -1.00 -81.23 401.83 -1.58 -82.81 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.15 Total: 16.34 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.66 Total: 4.89 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -9.16 Total: -98.45 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.10 Total: -40.86 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -81.23 -1.58 -82.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284883411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.081 kcal (2) G-P(sol) polarization free energy of solvation -81.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds