Wall clock time and date at job start Sat Apr 11 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.69668 * 2 1 4 4 S 1.83953 * 110.78931 * 236.68131 * 2 1 3 5 5 C 1.83962 * 94.80832 * 207.04316 * 4 2 1 6 6 C 1.54263 * 102.57715 * 34.49175 * 5 4 2 7 7 C 1.52327 * 112.59213 * 335.47467 * 6 5 4 8 8 H 1.09000 * 108.86860 * 239.17802 * 7 6 5 9 9 N 1.46504 * 108.87164 * 120.81531 * 7 6 5 10 10 C 1.34773 * 119.99875 * 121.82523 * 9 7 6 11 11 O 1.21355 * 120.00099 * 0.02562 * 10 9 7 12 12 C 1.49448 * 120.00053 * 180.02562 * 10 9 7 13 13 O 1.21351 * 119.99932 * 6.64333 * 12 10 9 14 14 N 1.34780 * 120.00008 * 186.64731 * 12 10 9 15 15 C 1.47076 * 120.88299 * 358.14560 * 14 12 10 16 16 C 1.53694 * 108.27770 * 128.75522 * 15 14 12 17 17 N 1.46897 * 109.25367 * 54.08390 * 16 15 14 18 18 C 1.46898 * 111.00050 * 172.60614 * 17 16 15 19 19 C 1.50699 * 109.47068 * 59.32537 * 18 17 16 20 20 H 1.07995 * 120.00092 * 5.04234 * 19 18 17 21 21 C 1.37875 * 119.99925 * 185.03214 * 19 18 17 22 22 N 1.31516 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47311 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47234 * 119.99994 * 23 21 19 26 26 H 1.48502 * 109.47389 * 240.00007 * 23 21 19 27 27 C 1.46898 * 111.27150 * 296.75626 * 17 16 15 28 28 C 1.47085 * 120.87873 * 178.42793 * 14 12 10 29 29 H 1.09008 * 109.46604 * 176.10275 * 1 2 3 30 30 H 1.08994 * 109.47491 * 296.10128 * 1 2 3 31 31 H 1.08996 * 109.47074 * 56.10337 * 1 2 3 32 32 H 1.08997 * 110.78522 * 152.76428 * 5 4 2 33 33 H 1.08994 * 110.78547 * 276.03596 * 5 4 2 34 34 H 1.09003 * 108.86429 * 96.29664 * 6 5 4 35 35 H 1.08999 * 108.86633 * 214.64787 * 6 5 4 36 36 H 0.96999 * 120.00232 * 301.83472 * 9 7 6 37 37 H 1.08997 * 109.62668 * 248.52878 * 15 14 12 38 38 H 1.09000 * 109.62712 * 9.10131 * 15 14 12 39 39 H 1.09001 * 109.64928 * 294.08077 * 16 15 14 40 40 H 1.09001 * 109.42019 * 173.94331 * 16 15 14 41 41 H 1.08999 * 109.47669 * 179.33036 * 18 17 16 42 42 H 1.08999 * 109.47053 * 299.32706 * 18 17 16 43 43 H 0.97001 * 120.00179 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.49064 * 303.14780 * 27 17 16 45 45 H 1.09004 * 109.49302 * 183.06433 * 27 17 16 46 46 H 1.08997 * 109.62696 * 350.88999 * 28 14 12 47 47 H 1.08999 * 109.62743 * 111.27602 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0196 0.0000 4 16 2.1829 -0.9447 -1.4371 5 6 3.7641 -1.4020 -0.6155 6 6 3.3381 -1.5821 0.8562 7 6 2.0816 -0.7936 1.2024 8 1 2.3133 -0.0970 2.0081 9 7 1.0511 -1.7249 1.6682 10 6 0.5124 -1.5755 2.8946 11 8 0.8807 -0.6693 3.6128 12 6 -0.5384 -2.5259 3.3700 13 8 -0.8209 -3.5005 2.7046 14 7 -1.1724 -2.3003 4.5378 15 6 -0.8173 -1.1474 5.3792 16 6 -2.1073 -0.3855 5.7222 17 7 -3.0748 -1.3154 6.3199 18 6 -4.2536 -0.5975 6.8226 19 6 -4.9126 0.1431 5.6876 20 1 -4.5465 0.0217 4.6789 21 6 -5.9830 0.9756 5.9369 22 7 -6.4286 1.1238 7.1654 23 14 -6.8002 1.8931 4.5299 24 1 -6.1157 1.5567 3.2557 25 1 -8.2286 1.4963 4.4436 26 1 -6.7064 3.3553 4.7716 27 6 -3.4637 -2.3645 5.3680 28 6 -2.2335 -3.2041 5.0075 29 1 -0.3633 -1.0254 -0.0699 30 1 -0.3634 0.4521 0.9228 31 1 -0.3633 0.5731 -0.8530 32 1 4.1555 -2.3346 -1.0218 33 1 4.4968 -0.6011 -0.7138 34 1 3.1530 -2.6400 1.0426 35 1 4.1514 -1.2505 1.5016 36 1 0.7565 -2.4492 1.0941 37 1 -0.3397 -1.4958 6.2949 38 1 -0.1373 -0.4923 4.8346 39 1 -2.5303 0.0461 4.8150 40 1 -1.8806 0.4096 6.4324 41 1 -4.9589 -1.3107 7.2492 42 1 -3.9464 0.1129 7.5902 43 1 -7.1819 1.7092 7.3408 44 1 -3.8677 -1.9054 4.4658 45 1 -4.2207 -3.0045 5.8213 46 1 -2.4903 -3.9093 4.2171 47 1 -1.8881 -3.7489 5.8862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330811234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:32 Heat of formation + Delta-G solvation = -36.229916 kcal Electronic energy + Delta-G solvation = -28588.754488 eV Core-core repulsion = 24705.715048 eV Total energy + Delta-G solvation = -3883.039440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09720 -39.21136 -37.61587 -37.35007 -34.55313 -33.06583 -32.34284 -32.17737 -30.69984 -28.44301 -27.23298 -25.67116 -24.27041 -23.85752 -23.11108 -22.08437 -20.83309 -20.61394 -19.32003 -17.80539 -17.27555 -16.81437 -16.40452 -16.19043 -16.04908 -15.35054 -15.19040 -14.83705 -14.81085 -14.42351 -14.30363 -14.08316 -13.89988 -13.63526 -13.55216 -13.32647 -12.77012 -12.62329 -12.42493 -12.38313 -11.87027 -11.76126 -11.56946 -11.52591 -11.34429 -11.16947 -11.03733 -10.85889 -10.69513 -10.62741 -10.32243 -10.26520 -9.92935 -9.71458 -9.67132 -9.01834 -8.57743 -8.48302 -8.13010 -7.27631 -6.08271 -4.17692 1.32349 1.38585 1.85614 2.19953 3.13909 3.22815 3.31371 3.34613 3.41977 3.85855 4.22054 4.25496 4.36223 4.37457 4.51340 4.62890 4.84594 4.94526 4.98309 5.17457 5.22121 5.31341 5.35480 5.40271 5.47839 5.49086 5.51145 5.63098 5.77738 5.80765 5.86755 5.92305 6.00347 6.32583 6.46398 6.55376 6.59706 6.72171 6.85734 7.18731 7.36360 7.46271 7.64524 7.83677 7.93450 7.96794 8.18037 8.22232 8.92313 9.49741 10.96858 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.002883 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.684424 B = 9709.690357 C =10817.766502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.044 4.044 3 H 0.108 0.892 4 S -0.294 6.294 5 C -0.067 4.067 6 C -0.138 4.138 7 C 0.134 3.866 8 H 0.119 0.881 9 N -0.692 5.692 10 C 0.516 3.484 11 O -0.506 6.506 12 C 0.502 3.498 13 O -0.535 6.535 14 N -0.566 5.566 15 C 0.055 3.945 16 C 0.053 3.947 17 N -0.543 5.543 18 C 0.187 3.813 19 C -0.551 4.551 20 H 0.056 0.944 21 C 0.066 3.934 22 N -0.889 5.889 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.050 3.950 28 C 0.111 3.889 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.417 0.583 37 H 0.069 0.931 38 H 0.148 0.852 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.029 0.971 42 H 0.037 0.963 43 H 0.262 0.738 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.569 -5.202 -12.491 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 H 0.126 0.874 4 S -0.067 6.067 5 C -0.215 4.215 6 C -0.177 4.177 7 C 0.027 3.973 8 H 0.137 0.863 9 N -0.345 5.345 10 C 0.298 3.702 11 O -0.383 6.383 12 C 0.284 3.716 13 O -0.413 6.413 14 N -0.298 5.298 15 C -0.066 4.066 16 C -0.076 4.076 17 N -0.267 5.267 18 C 0.062 3.938 19 C -0.590 4.590 20 H 0.074 0.926 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.079 4.079 28 C -0.011 4.011 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.164 0.836 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.309 -5.454 -12.908 24.674 hybrid contribution -0.776 0.953 -0.507 1.329 sum 19.533 -4.501 -13.415 24.120 Atomic orbital electron populations 1.21638 0.90882 1.03571 1.03037 1.24341 1.00402 1.00786 0.91859 0.87416 1.88261 1.22138 1.69588 1.26762 1.24123 0.96465 1.05307 0.95628 1.22403 0.97087 1.02634 0.95604 1.21697 0.86468 0.91492 0.97616 0.86349 1.45928 1.39822 1.32533 1.16260 1.20435 0.82645 0.84937 0.82146 1.90378 1.60695 1.33582 1.53626 1.19806 0.83287 0.86100 0.82453 1.90739 1.65367 1.29483 1.55704 1.48144 1.35031 1.27724 1.18858 1.23570 0.99541 0.87844 0.95631 1.22315 0.91375 0.94739 0.99193 1.62524 1.16171 1.13668 1.34326 1.19772 0.85942 0.92994 0.95133 1.21759 1.15486 1.27121 0.94594 0.92611 1.24954 0.96824 0.96478 0.95445 1.69947 1.25930 1.37966 1.18947 0.86601 0.79434 0.79750 0.82616 1.19917 1.20882 1.20864 1.22240 0.94664 0.94679 0.96343 1.22032 0.87174 0.92286 0.99640 0.91128 0.90842 0.91473 0.87447 0.88897 0.89338 0.89352 0.74557 0.91221 0.83624 0.94001 0.90270 0.95324 0.94528 0.92796 0.93984 0.90128 0.89286 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.56 37.16 0.32 -0.91 16 2 C -0.04 -0.35 3.89 -26.07 -0.10 -0.46 16 3 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 4 S -0.29 -2.51 22.74 -107.50 -2.44 -4.96 16 5 C -0.07 -0.37 7.46 37.82 0.28 -0.08 16 6 C -0.14 -0.79 6.11 -26.41 -0.16 -0.95 16 7 C 0.13 1.04 3.19 -67.61 -0.22 0.82 16 8 H 0.12 1.00 6.85 -51.93 -0.36 0.64 16 9 N -0.69 -6.63 3.04 -53.92 -0.16 -6.79 16 10 C 0.52 6.47 7.81 -11.59 -0.09 6.38 16 11 O -0.51 -6.93 12.34 5.49 0.07 -6.86 16 12 C 0.50 7.48 7.77 -11.58 -0.09 7.39 16 13 O -0.53 -8.69 15.95 5.50 0.09 -8.60 16 14 N -0.57 -8.90 3.00 -172.69 -0.52 -9.42 16 15 C 0.06 0.87 6.39 -3.37 -0.02 0.85 16 16 C 0.05 1.01 5.17 -3.46 -0.02 0.99 16 17 N -0.54 -11.23 4.83 -235.47 -1.14 -12.37 16 18 C 0.19 4.68 5.11 -4.98 -0.03 4.65 16 19 C -0.55 -14.85 7.75 -34.44 -0.27 -15.11 16 20 H 0.06 1.51 5.88 -52.49 -0.31 1.21 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 22 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 23 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.05 0.94 5.24 -3.70 -0.02 0.92 16 28 C 0.11 1.74 6.59 -3.60 -0.02 1.72 16 29 H 0.07 0.70 7.13 -51.92 -0.37 0.33 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.53 7.79 -51.93 -0.40 0.13 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.42 3.93 7.89 -40.82 -0.32 3.61 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.15 2.23 3.91 -56.56 -0.22 2.01 16 39 H 0.04 0.89 6.79 -51.93 -0.35 0.53 16 40 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 41 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.04 0.88 6.92 -51.93 -0.36 0.52 16 45 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 46 H 0.09 1.36 7.07 -51.93 -0.37 0.99 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -30.39 378.57 -10.48 -40.87 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.26 Total: 3.29 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.53 Total: 7.93 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -1.08 Total: -53.63 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.16 Total: -15.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.44 Total: -4.96 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.39 -10.48 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330811234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.636 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds