Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.69668 * 2 1 4 4 S 1.83953 * 110.78931 * 236.68131 * 2 1 3 5 5 C 1.83962 * 94.80832 * 207.04316 * 4 2 1 6 6 C 1.54263 * 102.57715 * 34.49175 * 5 4 2 7 7 C 1.52327 * 112.59213 * 335.47467 * 6 5 4 8 8 H 1.09000 * 108.86860 * 239.17802 * 7 6 5 9 9 N 1.46504 * 108.87164 * 120.81531 * 7 6 5 10 10 C 1.34773 * 119.99875 * 121.82523 * 9 7 6 11 11 O 1.21355 * 120.00099 * 0.02562 * 10 9 7 12 12 C 1.49448 * 120.00053 * 180.02562 * 10 9 7 13 13 O 1.21351 * 119.99932 * 6.64333 * 12 10 9 14 14 N 1.34780 * 120.00008 * 186.64731 * 12 10 9 15 15 C 1.47076 * 120.88299 * 358.14560 * 14 12 10 16 16 C 1.53694 * 108.27770 * 128.75522 * 15 14 12 17 17 N 1.46897 * 109.25367 * 54.08390 * 16 15 14 18 18 C 1.46898 * 111.00050 * 172.60614 * 17 16 15 19 19 C 1.50699 * 109.47068 * 59.32537 * 18 17 16 20 20 H 1.07995 * 120.00092 * 5.04234 * 19 18 17 21 21 C 1.37875 * 119.99925 * 185.03214 * 19 18 17 22 22 N 1.31516 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47311 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47234 * 119.99994 * 23 21 19 26 26 H 1.48502 * 109.47389 * 240.00007 * 23 21 19 27 27 C 1.46898 * 111.27150 * 296.75626 * 17 16 15 28 28 C 1.47085 * 120.87873 * 178.42793 * 14 12 10 29 29 H 1.09008 * 109.46604 * 176.10275 * 1 2 3 30 30 H 1.08994 * 109.47491 * 296.10128 * 1 2 3 31 31 H 1.08996 * 109.47074 * 56.10337 * 1 2 3 32 32 H 1.08997 * 110.78522 * 152.76428 * 5 4 2 33 33 H 1.08994 * 110.78547 * 276.03596 * 5 4 2 34 34 H 1.09003 * 108.86429 * 96.29664 * 6 5 4 35 35 H 1.08999 * 108.86633 * 214.64787 * 6 5 4 36 36 H 0.96999 * 120.00232 * 301.83472 * 9 7 6 37 37 H 1.08997 * 109.62668 * 248.52878 * 15 14 12 38 38 H 1.09000 * 109.62712 * 9.10131 * 15 14 12 39 39 H 1.09001 * 109.64928 * 294.08077 * 16 15 14 40 40 H 1.09001 * 109.42019 * 173.94331 * 16 15 14 41 41 H 1.08999 * 109.47669 * 179.33036 * 18 17 16 42 42 H 1.08999 * 109.47053 * 299.32706 * 18 17 16 43 43 H 0.97001 * 120.00179 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.49064 * 303.14780 * 27 17 16 45 45 H 1.09004 * 109.49302 * 183.06433 * 27 17 16 46 46 H 1.08997 * 109.62696 * 350.88999 * 28 14 12 47 47 H 1.08999 * 109.62743 * 111.27602 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0196 0.0000 4 16 2.1829 -0.9447 -1.4371 5 6 3.7641 -1.4020 -0.6155 6 6 3.3381 -1.5821 0.8562 7 6 2.0816 -0.7936 1.2024 8 1 2.3133 -0.0970 2.0081 9 7 1.0511 -1.7249 1.6682 10 6 0.5124 -1.5755 2.8946 11 8 0.8807 -0.6693 3.6128 12 6 -0.5384 -2.5259 3.3700 13 8 -0.8209 -3.5005 2.7046 14 7 -1.1724 -2.3003 4.5378 15 6 -0.8173 -1.1474 5.3792 16 6 -2.1073 -0.3855 5.7222 17 7 -3.0748 -1.3154 6.3199 18 6 -4.2536 -0.5975 6.8226 19 6 -4.9126 0.1431 5.6876 20 1 -4.5465 0.0217 4.6789 21 6 -5.9830 0.9756 5.9369 22 7 -6.4286 1.1238 7.1654 23 14 -6.8002 1.8931 4.5299 24 1 -6.1157 1.5567 3.2557 25 1 -8.2286 1.4963 4.4436 26 1 -6.7064 3.3553 4.7716 27 6 -3.4637 -2.3645 5.3680 28 6 -2.2335 -3.2041 5.0075 29 1 -0.3633 -1.0254 -0.0699 30 1 -0.3634 0.4521 0.9228 31 1 -0.3633 0.5731 -0.8530 32 1 4.1555 -2.3346 -1.0218 33 1 4.4968 -0.6011 -0.7138 34 1 3.1530 -2.6400 1.0426 35 1 4.1514 -1.2505 1.5016 36 1 0.7565 -2.4492 1.0941 37 1 -0.3397 -1.4958 6.2949 38 1 -0.1373 -0.4923 4.8346 39 1 -2.5303 0.0461 4.8150 40 1 -1.8806 0.4096 6.4324 41 1 -4.9589 -1.3107 7.2492 42 1 -3.9464 0.1129 7.5902 43 1 -7.1819 1.7092 7.3408 44 1 -3.8677 -1.9054 4.4658 45 1 -4.2207 -3.0045 5.8213 46 1 -2.4903 -3.9093 4.2171 47 1 -1.8881 -3.7489 5.8862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330811234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -56.417527 kcal Electronic energy + Delta-G solvation = -28589.629889 eV Core-core repulsion = 24705.715048 eV Total energy + Delta-G solvation = -3883.914841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.17582 -40.33826 -39.04536 -38.21952 -36.09661 -34.36975 -33.75432 -32.88531 -32.12208 -30.09839 -28.13886 -27.25113 -25.57316 -24.61364 -24.44042 -23.67105 -22.06903 -21.41034 -20.62228 -18.99068 -18.50503 -18.12421 -17.65466 -17.14413 -17.12455 -16.72763 -16.29430 -16.06961 -16.01980 -15.72845 -15.43269 -15.25917 -15.08544 -14.97760 -14.51474 -14.40871 -14.11022 -13.86472 -13.57597 -13.20998 -13.08304 -13.07166 -12.99152 -12.78617 -12.51091 -12.43798 -12.38214 -12.20446 -12.13823 -11.92344 -11.89601 -11.81189 -11.66580 -10.87849 -10.64608 -10.50154 -10.20492 -9.90767 -9.08401 -8.78105 -8.19260 -6.38402 0.24078 0.79017 1.17094 1.31813 1.32357 1.34501 1.45078 2.03785 2.33797 2.34239 3.05948 3.15032 3.27527 3.31805 3.68727 3.84716 3.94684 3.99474 4.07696 4.08023 4.26413 4.29060 4.34025 4.38365 4.51995 4.58262 4.63047 4.68681 4.75659 4.80289 4.83726 4.95280 5.00450 5.02686 5.09463 5.12593 5.17307 5.26319 5.29967 5.41467 5.70360 5.87719 5.98532 6.12043 6.24245 6.43235 6.59937 6.81407 6.83792 7.33147 8.83425 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.002883 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.684424 B = 9709.690357 C =10817.766502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.036 4.036 3 H 0.120 0.880 4 S -0.342 6.342 5 C -0.050 4.050 6 C -0.133 4.133 7 C 0.134 3.866 8 H 0.117 0.883 9 N -0.676 5.676 10 C 0.521 3.479 11 O -0.518 6.518 12 C 0.501 3.499 13 O -0.548 6.548 14 N -0.575 5.575 15 C 0.071 3.929 16 C 0.055 3.945 17 N -0.538 5.538 18 C 0.200 3.800 19 C -0.556 4.556 20 H 0.050 0.950 21 C 0.015 3.985 22 N -0.923 5.923 23 Si 0.953 3.047 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.276 1.276 27 C 0.053 3.947 28 C 0.121 3.879 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.419 0.581 37 H 0.083 0.917 38 H 0.158 0.842 39 H 0.017 0.983 40 H 0.075 0.925 41 H 0.008 0.992 42 H 0.012 0.988 43 H 0.266 0.734 44 H 0.016 0.984 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.666 -5.434 -13.775 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 H 0.138 0.862 4 S -0.116 6.116 5 C -0.198 4.198 6 C -0.172 4.172 7 C 0.029 3.971 8 H 0.135 0.865 9 N -0.329 5.329 10 C 0.303 3.697 11 O -0.396 6.396 12 C 0.283 3.717 13 O -0.427 6.427 14 N -0.307 5.307 15 C -0.050 4.050 16 C -0.074 4.074 17 N -0.262 5.262 18 C 0.074 3.926 19 C -0.595 4.595 20 H 0.068 0.932 21 C -0.185 4.185 22 N -0.562 5.562 23 Si 0.779 3.221 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.201 1.201 27 C -0.076 4.076 28 C -0.002 4.002 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.257 0.743 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.035 0.965 40 H 0.093 0.907 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.100 0.900 46 H 0.115 0.885 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.436 -5.700 -14.229 27.172 hybrid contribution -1.390 0.987 -0.153 1.712 sum 21.046 -4.714 -14.382 25.923 Atomic orbital electron populations 1.21589 0.92122 1.02834 1.02424 1.24284 0.99295 1.01382 0.91510 0.86211 1.88466 1.25015 1.70072 1.28090 1.24230 0.94568 1.06445 0.94583 1.22364 0.96419 1.02287 0.96147 1.21907 0.86595 0.91287 0.97360 0.86472 1.45917 1.39407 1.32489 1.15047 1.19968 0.82347 0.84420 0.83008 1.90350 1.61115 1.33926 1.54217 1.20214 0.83471 0.86230 0.81740 1.90729 1.65943 1.30190 1.55815 1.48203 1.35331 1.27743 1.19389 1.23471 0.97345 0.87773 0.96388 1.22332 0.92382 0.94963 0.97692 1.62467 1.14596 1.13780 1.35381 1.19439 0.86966 0.92065 0.94178 1.21953 1.15621 1.27234 0.94728 0.93186 1.25749 0.97491 0.97402 0.97822 1.70051 1.26570 1.38813 1.20790 0.85580 0.78434 0.78606 0.79495 1.19691 1.20250 1.20117 1.22248 0.96518 0.94258 0.94584 1.21909 0.85894 0.91704 1.00648 0.92025 0.92047 0.91382 0.86192 0.87251 0.89291 0.87353 0.74299 0.89898 0.82636 0.96501 0.90667 0.97377 0.96965 0.92504 0.96565 0.89959 0.88510 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.56 71.98 0.62 -1.74 16 2 C -0.04 -0.51 3.89 31.02 0.12 -0.39 16 3 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 4 S -0.34 -5.32 22.74 -56.49 -1.28 -6.60 16 5 C -0.05 -0.40 7.46 72.41 0.54 0.14 16 6 C -0.13 -1.11 6.11 30.80 0.19 -0.92 16 7 C 0.13 1.78 3.19 45.20 0.14 1.93 16 8 H 0.12 1.68 6.85 -2.39 -0.02 1.67 16 9 N -0.68 -11.85 3.04 -442.88 -1.35 -13.20 16 10 C 0.52 12.27 7.81 87.27 0.68 12.96 16 11 O -0.52 -13.30 12.34 -3.26 -0.04 -13.34 16 12 C 0.50 14.28 7.77 87.27 0.68 14.96 16 13 O -0.55 -17.09 15.95 -3.25 -0.05 -17.14 16 14 N -0.57 -17.42 3.00 -818.63 -2.46 -19.87 16 15 C 0.07 2.16 6.39 86.50 0.55 2.71 16 16 C 0.06 2.13 5.17 86.54 0.45 2.58 16 17 N -0.54 -22.64 4.83 -898.89 -4.34 -26.98 16 18 C 0.20 10.36 5.11 85.56 0.44 10.79 16 19 C -0.56 -30.71 7.75 25.60 0.20 -30.51 16 20 H 0.05 2.78 5.88 -2.91 -0.02 2.76 16 21 C 0.02 0.85 5.46 84.65 0.46 1.31 16 22 N -0.92 -54.37 13.29 21.45 0.28 -54.09 16 23 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.05 2.01 5.24 86.38 0.45 2.46 16 28 C 0.12 3.66 6.59 86.35 0.57 4.23 16 29 H 0.06 1.20 7.13 -2.38 -0.02 1.18 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.80 7.79 -2.39 -0.02 0.78 16 35 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.42 7.28 7.89 -92.71 -0.73 6.55 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.16 4.56 3.91 -75.72 -0.30 4.26 16 39 H 0.02 0.73 6.79 -2.39 -0.02 0.71 16 40 H 0.07 2.91 8.11 -2.39 -0.02 2.89 16 41 H 0.01 0.45 8.07 -2.39 -0.02 0.43 16 42 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.02 0.69 6.92 -2.39 -0.02 0.67 16 45 H 0.08 3.04 8.05 -2.39 -0.02 3.02 16 46 H 0.10 2.83 7.07 -2.39 -0.02 2.81 16 47 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -65.80 378.57 -1.15 -66.94 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.03 Total: 17.73 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 6.09 Total: 20.50 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -7.86 Total: -114.14 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.09 Total: -30.49 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -1.28 Total: -6.60 kcal Total: -65.80 -1.15 -66.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330811234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.527 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds