Wall clock time and date at job start Sat Apr 11 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.30261 * 2 1 4 4 S 1.83397 * 110.34199 * 122.27780 * 2 1 3 5 5 C 1.83988 * 95.85176 * 138.62286 * 4 2 1 6 6 C 1.55154 * 100.90760 * 324.65451 * 5 4 2 7 7 C 1.52936 * 108.96415 * 41.43405 * 6 5 4 8 8 H 1.09002 * 108.88618 * 90.69834 * 7 6 5 9 9 N 1.46505 * 108.88890 * 209.10631 * 7 6 5 10 10 C 1.34774 * 119.99896 * 277.98743 * 9 7 6 11 11 O 1.21346 * 120.00513 * 359.97438 * 10 9 7 12 12 C 1.49452 * 119.99890 * 179.97438 * 10 9 7 13 13 O 1.21344 * 120.00044 * 353.35540 * 12 10 9 14 14 N 1.34780 * 120.00010 * 173.35084 * 12 10 9 15 15 C 1.47082 * 120.87974 * 181.21874 * 14 12 10 16 16 C 1.53690 * 108.27428 * 128.75869 * 15 14 12 17 17 N 1.46898 * 109.25906 * 54.08232 * 16 15 14 18 18 C 1.46898 * 111.00439 * 172.60668 * 17 16 15 19 19 C 1.50701 * 109.47253 * 59.77047 * 18 17 16 20 20 H 1.08006 * 119.99599 * 355.26219 * 19 18 17 21 21 C 1.37875 * 120.00265 * 175.26279 * 19 18 17 22 22 N 1.31510 * 120.00010 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47255 * 59.99728 * 23 21 19 25 25 H 1.48496 * 109.46814 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47130 * 299.99809 * 23 21 19 27 27 C 1.46893 * 111.27002 * 296.75742 * 17 16 15 28 28 C 1.47080 * 120.88257 * 1.50332 * 14 12 10 29 29 H 1.09001 * 109.47159 * 182.17446 * 1 2 3 30 30 H 1.09001 * 109.47131 * 302.17147 * 1 2 3 31 31 H 1.08991 * 109.47003 * 62.17456 * 1 2 3 32 32 H 1.09002 * 111.12687 * 82.55987 * 5 4 2 33 33 H 1.08997 * 111.13164 * 206.69573 * 5 4 2 34 34 H 1.09004 * 109.60105 * 281.50515 * 6 5 4 35 35 H 1.09003 * 109.60645 * 161.37209 * 6 5 4 36 36 H 0.96995 * 119.99772 * 97.98333 * 9 7 6 37 37 H 1.08994 * 109.63160 * 248.52564 * 15 14 12 38 38 H 1.09001 * 109.62725 * 9.11216 * 15 14 12 39 39 H 1.09002 * 109.64875 * 294.07922 * 16 15 14 40 40 H 1.09003 * 109.42098 * 173.95220 * 16 15 14 41 41 H 1.08999 * 109.47526 * 179.77531 * 18 17 16 42 42 H 1.09004 * 109.46927 * 299.77257 * 18 17 16 43 43 H 0.96997 * 120.00063 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.49567 * 303.14571 * 27 17 16 45 45 H 1.08998 * 109.49642 * 183.05541 * 27 17 16 46 46 H 1.09003 * 109.62542 * 350.89360 * 28 14 12 47 47 H 1.09005 * 109.62774 * 111.47321 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 16 2.1676 -0.9183 1.4539 5 6 3.5205 -1.7802 0.5528 6 6 2.8496 -2.0192 -0.8256 7 6 2.0643 -0.7674 -1.2198 8 1 2.7159 -0.1083 -1.7937 9 7 0.9340 -1.1628 -2.0638 10 6 1.1202 -1.3816 -3.3805 11 8 2.2241 -1.2507 -3.8672 12 6 -0.0328 -1.7856 -4.2413 13 8 -1.1084 -2.0337 -3.7375 14 7 0.1221 -1.8741 -5.5772 15 6 -1.0063 -2.2439 -6.4452 16 6 -1.1136 -1.1994 -7.5674 17 7 0.1826 -1.0860 -8.2493 18 6 0.0789 -0.2294 -9.4383 19 6 -0.3783 1.1466 -9.0277 20 1 -0.6459 1.3424 -7.9998 21 6 -0.4550 2.1556 -9.9643 22 7 -0.1286 1.9173 -11.2158 23 14 -1.0210 3.8614 -9.4551 24 1 -0.1009 4.4004 -8.4217 25 1 -1.0166 4.7581 -10.6388 26 1 -2.3962 3.7816 -8.9004 27 6 1.2238 -0.5957 -7.3365 28 6 1.4255 -1.6095 -6.2053 29 1 -0.3633 -1.0269 0.0390 30 1 -0.3633 0.5472 0.8699 31 1 -0.3633 0.4797 -0.9088 32 1 4.3982 -1.1409 0.4570 33 1 3.7754 -2.7236 1.0355 34 1 2.1718 -2.8703 -0.7597 35 1 3.6150 -2.2218 -1.5747 36 1 0.0516 -1.2672 -1.6748 37 1 -0.8302 -3.2302 -6.8744 38 1 -1.9279 -2.2539 -5.8632 39 1 -1.3875 -0.2331 -7.1439 40 1 -1.8746 -1.5124 -8.2823 41 1 1.0533 -0.1594 -9.9218 42 1 -0.6418 -0.6593 -10.1340 43 1 -0.1830 2.6270 -11.8747 44 1 0.9174 0.3621 -6.9161 45 1 2.1582 -0.4710 -7.8839 46 1 2.1124 -1.2000 -5.4646 47 1 1.8309 -2.5361 -6.6119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330811237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:34 Heat of formation + Delta-G solvation = -31.814551 kcal Electronic energy + Delta-G solvation = -28420.471046 eV Core-core repulsion = 24537.623070 eV Total energy + Delta-G solvation = -3882.847976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11921 -39.26150 -37.63886 -37.45070 -34.56280 -33.16401 -32.36219 -32.15152 -30.70391 -28.45805 -27.18443 -25.70674 -24.44190 -23.83275 -23.11506 -22.15442 -20.93529 -20.27970 -19.43900 -17.83118 -17.36911 -17.06342 -16.47284 -16.19969 -15.90539 -15.49368 -15.09265 -14.83337 -14.64171 -14.46967 -14.43135 -14.12063 -13.76785 -13.67417 -13.48621 -13.36114 -12.91547 -12.70327 -12.56457 -12.39884 -11.87826 -11.82594 -11.73981 -11.47961 -11.27853 -11.16005 -11.07984 -10.86793 -10.72264 -10.61563 -10.38167 -10.29819 -9.97368 -9.72503 -9.67135 -9.02230 -8.59005 -8.48180 -8.16650 -7.28374 -6.08499 -4.18125 1.29058 1.32495 1.78237 2.24257 3.12736 3.24500 3.29875 3.32078 3.40445 3.79233 4.19348 4.29468 4.32608 4.35687 4.43591 4.61832 4.75049 4.93783 4.97494 5.15813 5.17495 5.21685 5.33422 5.36192 5.40750 5.49586 5.50971 5.61362 5.66635 5.76758 5.79321 5.90806 5.99164 6.31428 6.45371 6.54042 6.59082 6.70365 6.82408 7.18344 7.34799 7.45216 7.62496 7.83035 7.92327 7.95954 8.16692 8.22112 8.91362 9.49204 10.96638 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.002603 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.432776 B =10753.241429 C =11402.556251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 H 0.110 0.890 4 S -0.284 6.284 5 C -0.067 4.067 6 C -0.139 4.139 7 C 0.140 3.860 8 H 0.104 0.896 9 N -0.699 5.699 10 C 0.513 3.487 11 O -0.504 6.504 12 C 0.502 3.498 13 O -0.536 6.536 14 N -0.565 5.565 15 C 0.110 3.890 16 C 0.051 3.949 17 N -0.543 5.543 18 C 0.188 3.812 19 C -0.553 4.553 20 H 0.055 0.945 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.889 3.111 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.052 3.948 28 C 0.056 3.944 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.417 0.583 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.264 0.736 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.147 0.853 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -7.786 22.436 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 H 0.128 0.872 4 S -0.058 6.058 5 C -0.215 4.215 6 C -0.178 4.178 7 C 0.034 3.966 8 H 0.122 0.878 9 N -0.356 5.356 10 C 0.296 3.704 11 O -0.380 6.380 12 C 0.284 3.716 13 O -0.415 6.415 14 N -0.297 5.297 15 C -0.012 4.012 16 C -0.079 4.079 17 N -0.267 5.267 18 C 0.062 3.938 19 C -0.592 4.592 20 H 0.073 0.927 21 C -0.136 4.136 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.202 1.202 27 C -0.077 4.077 28 C -0.065 4.065 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.259 0.741 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.097 0.903 46 H 0.163 0.837 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.319 -8.235 23.145 25.136 hybrid contribution -0.577 1.909 -0.743 2.128 sum 4.743 -6.326 22.402 23.756 Atomic orbital electron populations 1.21849 0.91638 1.03519 1.03591 1.23935 1.00149 1.01407 0.92259 0.87171 1.88005 1.40462 1.58460 1.18878 1.24294 0.97872 1.03227 0.96109 1.22806 1.00331 0.98427 0.96285 1.21622 0.87966 0.95911 0.91114 0.87833 1.46284 1.13553 1.68419 1.07367 1.20452 0.89312 0.77517 0.83148 1.90383 1.26148 1.50506 1.71007 1.19808 0.88108 0.80171 0.83528 1.90729 1.26966 1.50531 1.73236 1.48147 1.13360 1.63711 1.04483 1.22149 0.88862 0.99065 0.91147 1.22321 0.93617 0.97067 0.94850 1.62522 1.04403 1.51694 1.08065 1.19763 0.97914 0.89244 0.86848 1.21695 1.45999 0.96306 0.95172 0.92710 1.24949 0.95017 0.98807 0.94871 1.69922 1.47767 1.33386 1.01704 0.86711 0.79328 0.84270 0.78054 1.20284 1.21109 1.20246 1.22239 0.96842 0.95560 0.93096 1.23461 0.84198 1.00657 0.98191 0.90862 0.90801 0.90342 0.88622 0.87159 0.89631 0.88785 0.74141 0.90595 0.89247 0.93820 0.90106 0.94617 0.95234 0.92671 0.94178 0.90259 0.83652 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.88 37.16 0.29 -0.70 16 2 C -0.05 -0.34 3.92 -26.37 -0.10 -0.45 16 3 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 4 S -0.28 -2.28 22.66 -107.50 -2.44 -4.72 16 5 C -0.07 -0.40 7.52 38.30 0.29 -0.11 16 6 C -0.14 -0.98 5.90 -25.62 -0.15 -1.13 16 7 C 0.14 1.12 2.91 -67.60 -0.20 0.92 16 8 H 0.10 0.90 7.58 -51.93 -0.39 0.50 16 9 N -0.70 -6.75 4.42 -53.91 -0.24 -6.98 16 10 C 0.51 6.51 7.71 -11.59 -0.09 6.42 16 11 O -0.50 -6.96 12.70 5.50 0.07 -6.89 16 12 C 0.50 7.50 7.77 -11.58 -0.09 7.41 16 13 O -0.54 -8.66 15.95 5.50 0.09 -8.57 16 14 N -0.57 -8.89 3.00 -172.69 -0.52 -9.41 16 15 C 0.11 1.73 6.62 -3.37 -0.02 1.70 16 16 C 0.05 0.96 5.18 -3.47 -0.02 0.94 16 17 N -0.54 -11.23 4.83 -235.48 -1.14 -12.37 16 18 C 0.19 4.70 5.11 -4.98 -0.03 4.67 16 19 C -0.55 -14.90 7.76 -34.44 -0.27 -15.17 16 20 H 0.05 1.48 5.88 -52.48 -0.31 1.17 16 21 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 22 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 23 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.05 0.98 5.24 -3.70 -0.02 0.97 16 28 C 0.06 0.88 6.35 -3.60 -0.02 0.86 16 29 H 0.07 0.50 7.16 -51.93 -0.37 0.12 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.55 7.47 -51.93 -0.39 0.16 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.42 3.79 5.10 -40.82 -0.21 3.58 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.36 7.07 -51.93 -0.37 0.99 16 39 H 0.04 0.92 6.64 -51.93 -0.34 0.57 16 40 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 41 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.04 0.85 7.09 -51.93 -0.37 0.48 16 45 H 0.08 1.50 8.06 -51.93 -0.42 1.08 16 46 H 0.15 2.23 3.92 -56.52 -0.22 2.01 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -30.32 376.67 -10.47 -40.79 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.16 Total: 3.21 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.52 Total: 8.07 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -1.16 Total: -53.79 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.16 Total: -15.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.44 Total: -4.72 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.32 -10.47 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330811237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.971 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds