Wall clock time and date at job start Sat Apr 11 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.30261 * 2 1 4 4 S 1.83397 * 110.34199 * 122.27780 * 2 1 3 5 5 C 1.83988 * 95.85176 * 138.62286 * 4 2 1 6 6 C 1.55154 * 100.90760 * 324.65451 * 5 4 2 7 7 C 1.52936 * 108.96415 * 41.43405 * 6 5 4 8 8 H 1.09002 * 108.88618 * 90.69834 * 7 6 5 9 9 N 1.46505 * 108.88890 * 209.10631 * 7 6 5 10 10 C 1.34774 * 119.99896 * 277.98743 * 9 7 6 11 11 O 1.21346 * 120.00513 * 359.97438 * 10 9 7 12 12 C 1.49452 * 119.99890 * 179.97438 * 10 9 7 13 13 O 1.21344 * 120.00044 * 353.35540 * 12 10 9 14 14 N 1.34780 * 120.00010 * 173.35084 * 12 10 9 15 15 C 1.47082 * 120.87974 * 181.21874 * 14 12 10 16 16 C 1.53690 * 108.27428 * 128.75869 * 15 14 12 17 17 N 1.46898 * 109.25906 * 54.08232 * 16 15 14 18 18 C 1.46898 * 111.00439 * 172.60668 * 17 16 15 19 19 C 1.50701 * 109.47253 * 59.77047 * 18 17 16 20 20 H 1.08006 * 119.99599 * 355.26219 * 19 18 17 21 21 C 1.37875 * 120.00265 * 175.26279 * 19 18 17 22 22 N 1.31510 * 120.00010 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99867 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47255 * 59.99728 * 23 21 19 25 25 H 1.48496 * 109.46814 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47130 * 299.99809 * 23 21 19 27 27 C 1.46893 * 111.27002 * 296.75742 * 17 16 15 28 28 C 1.47080 * 120.88257 * 1.50332 * 14 12 10 29 29 H 1.09001 * 109.47159 * 182.17446 * 1 2 3 30 30 H 1.09001 * 109.47131 * 302.17147 * 1 2 3 31 31 H 1.08991 * 109.47003 * 62.17456 * 1 2 3 32 32 H 1.09002 * 111.12687 * 82.55987 * 5 4 2 33 33 H 1.08997 * 111.13164 * 206.69573 * 5 4 2 34 34 H 1.09004 * 109.60105 * 281.50515 * 6 5 4 35 35 H 1.09003 * 109.60645 * 161.37209 * 6 5 4 36 36 H 0.96995 * 119.99772 * 97.98333 * 9 7 6 37 37 H 1.08994 * 109.63160 * 248.52564 * 15 14 12 38 38 H 1.09001 * 109.62725 * 9.11216 * 15 14 12 39 39 H 1.09002 * 109.64875 * 294.07922 * 16 15 14 40 40 H 1.09003 * 109.42098 * 173.95220 * 16 15 14 41 41 H 1.08999 * 109.47526 * 179.77531 * 18 17 16 42 42 H 1.09004 * 109.46927 * 299.77257 * 18 17 16 43 43 H 0.96997 * 120.00063 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.49567 * 303.14571 * 27 17 16 45 45 H 1.08998 * 109.49642 * 183.05541 * 27 17 16 46 46 H 1.09003 * 109.62542 * 350.89360 * 28 14 12 47 47 H 1.09005 * 109.62774 * 111.47321 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 16 2.1676 -0.9183 1.4539 5 6 3.5205 -1.7802 0.5528 6 6 2.8496 -2.0192 -0.8256 7 6 2.0643 -0.7674 -1.2198 8 1 2.7159 -0.1083 -1.7937 9 7 0.9340 -1.1628 -2.0638 10 6 1.1202 -1.3816 -3.3805 11 8 2.2241 -1.2507 -3.8672 12 6 -0.0328 -1.7856 -4.2413 13 8 -1.1084 -2.0337 -3.7375 14 7 0.1221 -1.8741 -5.5772 15 6 -1.0063 -2.2439 -6.4452 16 6 -1.1136 -1.1994 -7.5674 17 7 0.1826 -1.0860 -8.2493 18 6 0.0789 -0.2294 -9.4383 19 6 -0.3783 1.1466 -9.0277 20 1 -0.6459 1.3424 -7.9998 21 6 -0.4550 2.1556 -9.9643 22 7 -0.1286 1.9173 -11.2158 23 14 -1.0210 3.8614 -9.4551 24 1 -0.1009 4.4004 -8.4217 25 1 -1.0166 4.7581 -10.6388 26 1 -2.3962 3.7816 -8.9004 27 6 1.2238 -0.5957 -7.3365 28 6 1.4255 -1.6095 -6.2053 29 1 -0.3633 -1.0269 0.0390 30 1 -0.3633 0.5472 0.8699 31 1 -0.3633 0.4797 -0.9088 32 1 4.3982 -1.1409 0.4570 33 1 3.7754 -2.7236 1.0355 34 1 2.1718 -2.8703 -0.7597 35 1 3.6150 -2.2218 -1.5747 36 1 0.0516 -1.2672 -1.6748 37 1 -0.8302 -3.2302 -6.8744 38 1 -1.9279 -2.2539 -5.8632 39 1 -1.3875 -0.2331 -7.1439 40 1 -1.8746 -1.5124 -8.2823 41 1 1.0533 -0.1594 -9.9218 42 1 -0.6418 -0.6593 -10.1340 43 1 -0.1830 2.6270 -11.8747 44 1 0.9174 0.3621 -6.9161 45 1 2.1582 -0.4710 -7.8839 46 1 2.1124 -1.2000 -5.4646 47 1 1.8309 -2.5361 -6.6119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330811237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:34 Heat of formation + Delta-G solvation = -52.190739 kcal Electronic energy + Delta-G solvation = -28421.354623 eV Core-core repulsion = 24537.623070 eV Total energy + Delta-G solvation = -3883.731553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19340 -40.37557 -39.05385 -38.34797 -36.10363 -34.37062 -33.86294 -32.81338 -32.11722 -30.11175 -28.06739 -27.25336 -25.69280 -24.61496 -24.42508 -23.72792 -22.19090 -21.02985 -20.77660 -19.05795 -18.47778 -18.16335 -17.83812 -17.30648 -17.00725 -16.73278 -16.47265 -16.03529 -15.81368 -15.73545 -15.44362 -15.24622 -15.13517 -15.01481 -14.41352 -14.37102 -13.95367 -13.82342 -13.60065 -13.49449 -13.15019 -13.06541 -12.96944 -12.77662 -12.49926 -12.44665 -12.36596 -12.33897 -12.12437 -11.89489 -11.86783 -11.85575 -11.66760 -10.96917 -10.63999 -10.50901 -10.19785 -9.91271 -9.08278 -8.77643 -8.18768 -6.38187 0.23203 0.71679 1.11155 1.34657 1.35099 1.35528 1.43550 2.02180 2.33906 2.34299 3.06448 3.10804 3.23576 3.31656 3.71323 3.73252 3.86385 3.97543 4.07574 4.09364 4.19700 4.29008 4.34176 4.39973 4.51533 4.58676 4.63012 4.70330 4.70823 4.79833 4.83674 4.85397 4.99813 5.01573 5.12376 5.12675 5.15727 5.25701 5.30022 5.38166 5.70219 5.85819 5.98344 6.11120 6.23525 6.43196 6.58023 6.80853 6.82376 7.33351 8.83624 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.002603 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.432776 B =10753.241429 C =11402.556251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 H 0.119 0.881 4 S -0.320 6.320 5 C -0.054 4.054 6 C -0.135 4.135 7 C 0.139 3.861 8 H 0.101 0.899 9 N -0.683 5.683 10 C 0.517 3.483 11 O -0.516 6.516 12 C 0.501 3.499 13 O -0.548 6.548 14 N -0.574 5.574 15 C 0.120 3.880 16 C 0.054 3.946 17 N -0.539 5.539 18 C 0.201 3.799 19 C -0.559 4.559 20 H 0.051 0.949 21 C 0.015 3.985 22 N -0.923 5.923 23 Si 0.953 3.047 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.271 1.271 27 C 0.054 3.946 28 C 0.072 3.928 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.421 0.579 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.019 0.981 40 H 0.081 0.919 41 H 0.011 0.989 42 H 0.008 0.992 43 H 0.266 0.734 44 H 0.016 0.984 45 H 0.076 0.924 46 H 0.157 0.843 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 -7.889 24.414 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 H 0.137 0.863 4 S -0.094 6.094 5 C -0.202 4.202 6 C -0.174 4.174 7 C 0.034 3.966 8 H 0.119 0.881 9 N -0.340 5.340 10 C 0.299 3.701 11 O -0.394 6.394 12 C 0.284 3.716 13 O -0.427 6.427 14 N -0.306 5.306 15 C -0.002 4.002 16 C -0.076 4.076 17 N -0.262 5.262 18 C 0.074 3.926 19 C -0.598 4.598 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.562 5.562 23 Si 0.778 3.222 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.197 1.197 27 C -0.075 4.075 28 C -0.049 4.049 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.264 0.736 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.037 0.963 40 H 0.099 0.901 41 H 0.030 0.970 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.094 0.906 46 H 0.173 0.827 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.653 -8.348 25.175 27.119 hybrid contribution -0.686 1.907 -1.304 2.410 sum 4.966 -6.441 23.871 25.218 Atomic orbital electron populations 1.21842 0.91405 1.03553 1.03750 1.23913 1.00288 1.01483 0.91164 0.86320 1.88163 1.41883 1.59176 1.20162 1.24351 0.97201 1.03791 0.94819 1.22744 1.00168 0.97606 0.96932 1.21787 0.87305 0.96486 0.91043 0.88097 1.46264 1.14388 1.66895 1.06404 1.20029 0.88329 0.77986 0.83799 1.90356 1.26132 1.51582 1.71314 1.20186 0.88634 0.79415 0.83355 1.90721 1.27706 1.50842 1.73407 1.48202 1.13187 1.64197 1.05022 1.22024 0.89559 0.98467 0.90137 1.22325 0.92543 0.97008 0.95687 1.62462 1.05859 1.50271 1.07651 1.19430 0.95677 0.89277 0.88213 1.21915 1.45646 0.97282 0.94972 0.93079 1.25758 0.95143 1.02713 0.94851 1.70036 1.48814 1.34654 1.02707 0.85686 0.78990 0.79628 0.77871 1.19680 1.20485 1.19658 1.22263 0.95923 0.95647 0.93651 1.23362 0.84448 1.00139 0.96983 0.90918 0.90281 0.90494 0.87382 0.85849 0.90027 0.88701 0.73648 0.88860 0.88394 0.96297 0.90097 0.97047 0.97370 0.92497 0.96614 0.90565 0.82683 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.88 71.98 0.57 -1.18 16 2 C -0.04 -0.49 3.92 30.83 0.12 -0.37 16 3 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 4 S -0.32 -4.60 22.66 -56.49 -1.28 -5.88 16 5 C -0.05 -0.52 7.52 72.72 0.55 0.03 16 6 C -0.13 -1.62 5.90 31.31 0.18 -1.44 16 7 C 0.14 1.95 2.91 45.20 0.13 2.08 16 8 H 0.10 1.55 7.58 -2.39 -0.02 1.53 16 9 N -0.68 -11.98 4.42 -442.85 -1.96 -13.94 16 10 C 0.52 12.23 7.71 87.27 0.67 12.90 16 11 O -0.52 -13.31 12.70 -3.23 -0.04 -13.35 16 12 C 0.50 14.18 7.77 87.27 0.68 14.86 16 13 O -0.55 -16.79 15.95 -3.23 -0.05 -16.84 16 14 N -0.57 -17.27 3.00 -818.63 -2.46 -19.72 16 15 C 0.12 3.62 6.62 86.50 0.57 4.19 16 16 C 0.05 2.02 5.18 86.54 0.45 2.47 16 17 N -0.54 -22.55 4.83 -898.91 -4.34 -26.89 16 18 C 0.20 10.36 5.11 85.56 0.44 10.79 16 19 C -0.56 -30.73 7.76 25.60 0.20 -30.53 16 20 H 0.05 2.80 5.88 -2.91 -0.02 2.79 16 21 C 0.02 0.85 5.46 84.65 0.46 1.32 16 22 N -0.92 -54.29 13.29 21.45 0.28 -54.00 16 23 Si 0.95 43.70 29.54 68.60 2.03 45.72 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 C 0.05 2.07 5.24 86.38 0.45 2.52 16 28 C 0.07 2.16 6.35 86.35 0.55 2.71 16 29 H 0.07 0.87 7.16 -2.39 -0.02 0.86 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.95 7.47 -2.39 -0.02 0.93 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.07 8.03 -2.38 -0.02 1.06 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.42 6.91 5.10 -92.71 -0.47 6.44 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.10 2.82 7.07 -2.39 -0.02 2.81 16 39 H 0.02 0.80 6.64 -2.39 -0.02 0.79 16 40 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 41 H 0.01 0.64 8.07 -2.39 -0.02 0.62 16 42 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.02 0.67 7.09 -2.39 -0.02 0.65 16 45 H 0.08 2.91 8.06 -2.39 -0.02 2.89 16 46 H 0.16 4.52 3.92 -75.05 -0.29 4.23 16 47 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -64.80 376.67 -1.56 -66.37 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.23 Total: 18.18 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 6.02 Total: 20.35 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -8.47 Total: -114.55 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.09 Total: -30.19 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.28 Total: -5.88 kcal Total: -64.80 -1.56 -66.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330811237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.176 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds