Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.40321 * 2 1 4 4 C 1.52900 * 109.33860 * 240.20639 * 2 1 3 5 5 C 1.51065 * 110.45839 * 155.23593 * 4 2 1 6 6 N 1.31082 * 125.12076 * 207.99557 * 5 4 2 7 7 N 1.40040 * 108.43900 * 181.90188 * 6 5 4 8 8 H 0.96996 * 126.03201 * 179.51734 * 7 6 5 9 9 C 1.35020 * 107.94322 * 359.54964 * 7 6 5 10 10 C 1.34808 * 107.59612 * 359.33770 * 9 7 6 11 11 C 1.51307 * 127.18128 * 184.20285 * 10 9 7 12 12 N 1.46839 * 108.07541 * 222.04509 * 11 10 9 13 13 S 1.65598 * 120.43284 * 92.98116 * 12 11 10 14 14 O 1.42092 * 104.27838 * 153.64776 * 13 12 11 15 15 O 1.42105 * 104.27740 * 25.79030 * 13 12 11 16 16 C 1.81408 * 104.44651 * 269.72183 * 13 12 11 17 17 C 1.53004 * 109.46678 * 179.97438 * 16 13 12 18 18 C 1.53000 * 109.47375 * 59.99978 * 17 16 13 19 19 C 1.53001 * 109.47006 * 299.99771 * 17 16 13 20 20 C 1.50701 * 109.46675 * 179.97438 * 17 16 13 21 21 H 1.08003 * 120.00064 * 5.42340 * 20 17 16 22 22 C 1.37877 * 119.99628 * 185.41727 * 20 17 16 23 23 N 1.31523 * 119.99587 * 150.83709 * 22 20 17 24 24 Si 1.86793 * 120.00262 * 330.55948 * 22 20 17 25 25 H 1.48504 * 109.47083 * 180.27463 * 24 22 20 26 26 H 1.48499 * 109.47322 * 300.27434 * 24 22 20 27 27 H 1.48499 * 109.46935 * 60.27806 * 24 22 20 28 28 C 1.45281 * 119.13473 * 272.70494 * 12 11 10 29 29 H 1.09002 * 109.47246 * 300.16567 * 1 2 3 30 30 H 1.08996 * 109.47061 * 60.16860 * 1 2 3 31 31 H 1.09004 * 109.47159 * 180.17014 * 1 2 3 32 32 H 1.09003 * 109.30956 * 275.54116 * 4 2 1 33 33 H 1.09001 * 109.30390 * 34.93158 * 4 2 1 34 34 H 1.08005 * 126.20221 * 179.33077 * 9 7 6 35 35 H 1.08996 * 109.73305 * 102.47393 * 11 10 9 36 36 H 1.09000 * 109.93641 * 341.73207 * 11 10 9 37 37 H 1.08998 * 109.46711 * 60.00308 * 16 13 12 38 38 H 1.08996 * 109.46606 * 299.99770 * 16 13 12 39 39 H 1.08991 * 109.46886 * 172.47349 * 18 17 16 40 40 H 1.09000 * 109.46671 * 292.47699 * 18 17 16 41 41 H 1.08994 * 109.46895 * 52.47201 * 18 17 16 42 42 H 1.08998 * 109.47194 * 303.38558 * 19 17 16 43 43 H 1.08998 * 109.47519 * 63.39085 * 19 17 16 44 44 H 1.09002 * 109.47170 * 183.38930 * 19 17 16 45 45 H 0.96998 * 119.99833 * 354.68590 * 23 22 20 46 46 H 1.09004 * 109.38573 * 153.31123 * 28 12 11 47 47 H 1.09004 * 109.38611 * 273.00023 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0363 -0.7169 -1.2520 5 6 3.4238 -0.2384 -1.6096 6 7 3.9278 -0.2233 -2.8196 7 7 5.2457 0.2443 -2.7447 8 1 5.8566 0.3509 -3.4906 9 6 5.5163 0.5201 -1.4510 10 6 4.4056 0.2512 -0.7360 11 6 4.1914 0.4854 0.7434 12 7 3.4913 -0.6825 1.2930 13 16 4.3453 -1.9380 1.9538 14 8 3.4460 -2.5207 2.8870 15 8 5.5639 -1.3458 2.3823 16 6 4.6400 -3.0660 0.5640 17 6 5.4312 -4.2811 1.0524 18 6 4.6334 -5.0066 2.1378 19 6 6.7717 -3.8193 1.6274 20 6 5.6754 -5.2185 -0.1021 21 1 5.3813 -4.9328 -1.1012 22 6 6.2746 -6.4408 0.1173 23 7 5.9983 -7.4589 -0.6681 24 14 7.4845 -6.6486 1.5252 25 1 7.9891 -8.0452 1.5421 26 1 8.6231 -5.7131 1.3415 27 1 6.8032 -6.3528 2.8111 28 6 2.0395 -0.7195 1.2548 29 1 -0.3634 0.5164 0.8885 30 1 -0.3633 0.5112 -0.8915 31 1 -0.3634 -1.0277 0.0031 32 1 2.0619 -1.7908 -1.0670 33 1 1.3598 -0.5134 -2.0821 34 1 6.4530 0.8891 -1.0598 35 1 3.5854 1.3794 0.8905 36 1 5.1523 0.6063 1.2435 37 1 5.2088 -2.5493 -0.2090 38 1 3.6850 -3.3946 0.1541 39 1 5.1318 -5.9423 2.3907 40 1 4.5710 -4.3766 3.0251 41 1 3.6291 -5.2175 1.7707 42 1 7.3143 -3.2505 0.8724 43 1 6.5954 -3.1896 2.4995 44 1 7.3604 -4.6887 1.9201 45 1 5.3167 -7.3723 -1.3527 46 1 1.7043 -1.7566 1.2386 47 1 1.6415 -0.2261 2.1416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434615499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = -14.934797 kcal Electronic energy + Delta-G solvation = -30359.538797 eV Core-core repulsion = 26477.422782 eV Total energy + Delta-G solvation = -3882.116015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32151 -38.96020 -38.44669 -38.19991 -36.95321 -35.11075 -34.13744 -32.91086 -31.57745 -28.97381 -28.16954 -28.08654 -27.49120 -26.65099 -25.66479 -22.02737 -21.65255 -21.19833 -20.55475 -19.81877 -19.07920 -18.69338 -18.36868 -17.54604 -17.10908 -16.66450 -16.38918 -15.70762 -15.55755 -15.29844 -15.10438 -14.91819 -14.71938 -14.53123 -14.35450 -14.18039 -14.01296 -13.89950 -13.48790 -13.24380 -13.18532 -13.16199 -12.90803 -12.85746 -12.70746 -12.56741 -12.33800 -12.19561 -12.17020 -12.02272 -11.80412 -11.67804 -11.48726 -11.36020 -11.02801 -10.81098 -10.33753 -10.31118 -9.98883 -9.45816 -8.78744 -6.35977 -0.67885 0.95501 1.39996 1.43291 1.57275 1.67073 1.89027 2.03213 2.41445 2.79294 2.91388 3.15789 3.56047 3.65480 3.78012 3.86135 3.93389 4.03357 4.17156 4.24479 4.28270 4.41776 4.51673 4.52982 4.56738 4.58557 4.60980 4.67854 4.72033 4.83220 4.83795 4.89597 4.92848 4.98080 5.06847 5.10069 5.16211 5.29418 5.34130 5.37797 5.52182 5.53528 5.63837 5.74276 5.96766 6.05190 6.45016 6.53756 6.73006 7.33071 8.53936 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.004784 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.414691 B = 5851.976767 C = 6409.853233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.095 0.905 4 C -0.041 4.041 5 C 0.086 3.914 6 N -0.337 5.337 7 N -0.474 5.474 8 H 0.451 0.549 9 C 0.081 3.919 10 C -0.284 4.284 11 C 0.193 3.807 12 N -0.990 5.990 13 S 2.617 3.383 14 O -0.981 6.981 15 O -0.974 6.974 16 C -0.576 4.576 17 C 0.050 3.950 18 C -0.172 4.172 19 C -0.181 4.181 20 C -0.598 4.598 21 H 0.025 0.975 22 C 0.001 3.999 23 N -0.918 5.918 24 Si 1.063 2.937 25 H -0.301 1.301 26 H -0.261 1.261 27 H -0.246 1.246 28 C 0.117 3.883 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.215 0.785 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.258 0.742 46 H 0.071 0.929 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 21.843 1.561 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.113 0.887 4 C -0.080 4.080 5 C -0.081 4.081 6 N -0.161 5.161 7 N -0.182 5.182 8 H 0.297 0.703 9 C -0.068 4.068 10 C -0.297 4.297 11 C 0.068 3.932 12 N -0.827 5.827 13 S 2.713 3.287 14 O -0.971 6.971 15 O -0.964 6.964 16 C -0.706 4.706 17 C 0.047 3.953 18 C -0.229 4.229 19 C -0.238 4.238 20 C -0.636 4.636 21 H 0.043 0.957 22 C -0.201 4.201 23 N -0.552 5.552 24 Si 0.889 3.111 25 H -0.229 1.229 26 H -0.187 1.187 27 H -0.171 1.171 28 C -0.008 4.008 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.231 0.769 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.765 20.482 1.936 21.366 hybrid contribution -0.485 0.424 -1.896 2.002 sum -6.250 20.906 0.040 21.821 Atomic orbital electron populations 1.21804 0.92168 1.02835 1.03357 1.21422 0.97218 1.00409 0.91488 0.88693 1.20195 0.88927 0.99816 0.99106 1.22772 0.97594 0.97722 0.90023 1.77242 0.93204 1.22980 1.22699 1.46285 1.11151 1.52192 1.08605 0.70335 1.22860 1.00745 0.98796 0.84366 1.20802 0.94741 1.15634 0.98557 1.19973 0.98713 0.88079 0.86474 1.57280 1.15472 1.32544 1.77384 1.04766 0.73420 0.74192 0.76311 1.93518 1.65047 1.78809 1.59751 1.93488 1.46719 1.75652 1.80549 1.30385 1.09053 1.12226 1.18946 1.18145 0.91398 0.91208 0.94508 1.22605 1.00861 1.01631 0.97831 1.22751 0.99387 1.00688 1.00981 1.21699 1.45826 1.02934 0.93123 0.95654 1.26841 0.98999 0.91434 1.02833 1.70967 1.31930 1.31154 1.21107 0.84081 0.76590 0.74763 0.75644 1.22872 1.18710 1.17115 1.21513 0.77973 1.01941 0.99415 0.90606 0.91263 0.92301 0.91254 0.89264 0.76855 0.86216 0.87990 0.86432 0.86576 0.92427 0.92791 0.92765 0.91553 0.92053 0.93297 0.93253 0.91058 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 71.98 0.65 -1.08 16 2 C -0.08 -1.38 2.36 -10.71 -0.03 -1.40 16 3 H 0.09 1.35 6.31 -2.38 -0.02 1.33 16 4 C -0.04 -0.89 5.34 29.93 0.16 -0.73 16 5 C 0.09 2.18 6.80 43.27 0.29 2.48 16 6 N -0.34 -9.40 12.69 -46.75 -0.59 -9.99 16 7 N -0.47 -10.04 7.36 -57.85 -0.43 -10.47 16 8 H 0.45 6.73 8.96 -213.36 -1.91 4.82 16 9 C 0.08 1.54 11.93 83.41 1.00 2.54 16 10 C -0.28 -6.32 5.68 -19.97 -0.11 -6.43 16 11 C 0.19 3.83 5.68 85.76 0.49 4.32 16 12 N -0.99 -24.43 2.79 -520.17 -1.45 -25.88 16 13 S 2.62 89.06 4.42 -56.49 -0.25 88.81 16 14 O -0.98 -37.36 14.84 -127.65 -1.89 -39.25 16 15 O -0.97 -35.30 14.28 -127.65 -1.82 -37.12 16 16 C -0.58 -22.58 5.11 71.98 0.37 -22.21 16 17 C 0.05 2.35 0.52 -52.93 -0.03 2.33 16 18 C -0.17 -7.90 7.38 71.98 0.53 -7.37 16 19 C -0.18 -7.97 7.33 71.98 0.53 -7.44 16 20 C -0.60 -33.57 8.42 25.60 0.22 -33.35 16 21 H 0.03 1.55 7.99 -2.91 -0.02 1.53 16 22 C 0.00 0.04 5.04 84.65 0.43 0.47 16 23 N -0.92 -56.95 13.70 21.45 0.29 -56.65 16 24 Si 1.06 50.88 23.48 68.60 1.61 52.49 16 25 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.26 -11.47 6.72 99.48 0.67 -10.80 16 27 H -0.25 -10.64 5.81 99.48 0.58 -10.06 16 28 C 0.12 2.38 4.93 86.73 0.43 2.81 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.74 8.10 -2.39 -0.02 0.72 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 1.70 7.89 -2.39 -0.02 1.68 16 33 H 0.09 1.75 7.87 -2.39 -0.02 1.73 16 34 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.12 1.65 6.95 -2.39 -0.02 1.63 16 36 H 0.10 2.00 6.91 -2.39 -0.02 1.98 16 37 H 0.12 4.54 8.14 -2.39 -0.02 4.52 16 38 H 0.12 4.47 8.14 -2.39 -0.02 4.45 16 39 H 0.06 2.71 4.49 -2.39 -0.01 2.70 16 40 H 0.05 2.27 6.02 -2.39 -0.01 2.26 16 41 H 0.05 2.43 8.13 -2.39 -0.02 2.41 16 42 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.06 2.47 5.71 -2.39 -0.01 2.46 16 44 H 0.05 2.16 2.28 -2.39 -0.01 2.16 16 45 H 0.26 16.16 8.73 -92.71 -0.81 15.35 16 46 H 0.07 1.59 7.63 -2.39 -0.02 1.57 16 47 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -75.87 359.66 -0.73 -76.60 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -1.12 Total: 26.56 kcal Atomic # 6 Polarization: -70.01 SS G_CDS: 4.92 Total: -65.10 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -2.18 Total: -103.00 kcal Atomic # 8 Polarization: -72.66 SS G_CDS: -3.72 Total: -76.37 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 1.61 Total: 52.49 kcal Atomic # 16 Polarization: 89.06 SS G_CDS: -0.25 Total: 88.81 kcal Total: -75.87 -0.73 -76.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434615499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.669 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds