Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.29510 * 2 1 4 4 C 1.54015 * 110.32429 * 122.13260 * 2 1 3 5 5 N 1.47489 * 107.08132 * 117.58310 * 4 2 1 6 6 C 1.34770 * 127.02939 * 205.41169 * 5 4 2 7 7 O 1.21556 * 119.99664 * 173.45811 * 6 5 4 8 8 C 1.47847 * 120.00331 * 353.45842 * 6 5 4 9 9 C 1.40598 * 120.27756 * 348.77612 * 8 6 5 10 10 N 1.30811 * 121.51992 * 179.97438 * 9 8 6 11 11 C 1.33767 * 121.79850 * 0.02562 * 10 9 8 12 12 N 1.33883 * 120.62182 * 180.02562 * 11 10 9 13 13 C 1.31332 * 119.84600 * 179.97438 * 12 11 10 14 14 C 1.39755 * 120.77675 * 359.97438 * 13 12 11 15 15 N 1.31308 * 120.55746 * 0.04126 * 14 13 12 16 16 C 1.33669 * 119.70167 * 359.96036 * 15 14 13 17 17 C 1.38900 * 120.27613 * 168.50400 * 8 6 5 18 18 C 1.48112 * 105.93106 * 25.44808 * 5 4 2 19 19 C 1.54613 * 110.32787 * 237.74910 * 2 1 3 20 20 H 1.09004 * 110.73938 * 337.60418 * 19 2 1 21 21 C 1.53007 * 110.73504 * 100.92351 * 19 2 1 22 22 N 1.46502 * 109.46837 * 185.00443 * 21 19 2 23 23 C 1.36937 * 119.99619 * 180.02562 * 22 21 19 24 24 H 1.07996 * 120.00216 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99657 * 179.97438 * 23 22 21 26 26 N 1.31617 * 120.00171 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99800 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47174 * 90.00088 * 27 25 23 29 29 H 1.48501 * 109.46813 * 209.99888 * 27 25 23 30 30 H 1.48497 * 109.47146 * 329.99568 * 27 25 23 31 31 H 1.09004 * 109.46923 * 299.32295 * 1 2 3 32 32 H 1.08997 * 109.47079 * 59.31673 * 1 2 3 33 33 H 1.08996 * 109.47692 * 179.31990 * 1 2 3 34 34 H 1.08996 * 109.91184 * 236.94489 * 4 2 1 35 35 H 1.09001 * 109.90721 * 358.03452 * 4 2 1 36 36 H 1.07997 * 119.23979 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.60977 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.72189 * 180.02562 * 14 13 12 39 39 H 1.07998 * 121.00089 * 0.02562 * 17 8 6 40 40 H 1.09004 * 110.66313 * 79.14749 * 18 5 4 41 41 H 1.09003 * 110.66480 * 202.26426 * 18 5 4 42 42 H 1.08993 * 109.47059 * 305.00145 * 21 19 2 43 43 H 1.09001 * 109.46880 * 65.00250 * 21 19 2 44 44 H 0.97000 * 120.00104 * 359.97438 * 22 21 19 45 45 H 0.96999 * 120.00101 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0649 -0.7682 1.2230 5 7 2.8276 -1.9218 0.7104 6 6 3.0622 -3.0868 1.3461 7 8 3.6075 -4.0006 0.7586 8 6 2.6564 -3.2534 2.7580 9 6 2.2444 -2.1412 3.5131 10 7 1.8799 -2.2608 4.7637 11 6 1.8805 -3.4439 5.3880 12 7 1.5022 -3.5393 6.6688 13 6 1.5082 -4.7086 7.2667 14 6 1.9051 -5.8601 6.5814 15 7 2.2808 -5.7932 5.3250 16 6 2.2827 -4.6136 4.6963 17 6 2.6736 -4.5108 3.3479 18 6 3.2835 -1.5377 -0.6454 19 6 2.0671 -0.7737 -1.2262 20 1 1.3174 -1.4700 -1.6019 21 6 2.5096 0.1938 -2.3259 22 7 2.9003 -0.5657 -3.5162 23 6 3.3353 0.0921 -4.6357 24 1 3.3900 1.1706 -4.6413 25 6 3.7061 -0.6276 -5.7633 26 7 3.6399 -1.9421 -5.7563 27 14 4.2989 0.2697 -7.2907 28 1 5.7720 0.4438 -7.2222 29 1 3.9497 -0.5228 -8.4971 30 1 3.6460 1.6013 -7.3672 31 1 -0.3633 0.5033 0.8960 32 1 -0.3633 0.5244 -0.8838 33 1 -0.3634 -1.0275 -0.0122 34 1 2.7180 -0.1227 1.8102 35 1 1.2334 -1.1127 1.8377 36 1 2.2285 -1.1658 3.0500 37 1 1.2027 -4.7811 8.3000 38 1 1.9031 -6.8131 7.0897 39 1 2.9818 -5.3827 2.7901 40 1 4.1553 -0.8859 -0.5878 41 1 3.5025 -2.4228 -1.2427 42 1 1.6852 0.8617 -2.5755 43 1 3.3584 0.7801 -1.9740 44 1 2.8516 -1.5344 -3.5110 45 1 3.8994 -2.4449 -6.5441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484369557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = 59.143008 kcal Electronic energy + Delta-G solvation = -28632.689560 eV Core-core repulsion = 24650.634600 eV Total energy + Delta-G solvation = -3982.054960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.91105 -41.52492 -39.56869 -38.94573 -36.50787 -36.18303 -34.39916 -33.20260 -33.06278 -32.50047 -30.64987 -27.99810 -27.69316 -26.52954 -26.11108 -24.91844 -24.04915 -22.91189 -21.64751 -21.19434 -20.52568 -19.30991 -19.10482 -18.87943 -17.53353 -17.22322 -16.89399 -16.65650 -16.44396 -16.28554 -15.85105 -15.74822 -15.33801 -15.16281 -14.87722 -14.61782 -14.44683 -14.21437 -14.05585 -13.94396 -13.59304 -13.35850 -13.08941 -13.00898 -12.89259 -12.86139 -12.76427 -12.46827 -12.20398 -11.97069 -11.93276 -11.68425 -11.53958 -11.40404 -11.24245 -10.92021 -10.65990 -10.37168 -9.96185 -9.85754 -8.97883 -7.93331 -5.22273 -1.31871 -0.96678 0.48518 1.16076 1.47774 1.49683 1.58002 1.59248 1.91032 2.34482 2.57036 2.75695 2.78404 2.84040 3.15400 3.32632 3.40075 3.45181 3.51674 3.60127 3.75330 3.81756 3.90676 4.12880 4.18820 4.26612 4.30504 4.36098 4.47642 4.52493 4.55010 4.61204 4.72999 4.78131 4.82797 4.89456 4.99906 5.08566 5.20000 5.21639 5.28283 5.36639 5.50949 5.55253 5.76880 6.26609 6.28337 6.30988 6.67431 6.81467 7.34449 8.11694 8.32379 9.30324 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.002148 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.162669 B =13032.451024 C =13864.855532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.114 0.886 4 C 0.080 3.920 5 N -0.609 5.609 6 C 0.578 3.422 7 O -0.574 6.574 8 C -0.177 4.177 9 C 0.173 3.827 10 N -0.471 5.471 11 C 0.253 3.747 12 N -0.453 5.453 13 C 0.135 3.865 14 C 0.092 3.908 15 N -0.436 5.436 16 C 0.003 3.997 17 C 0.032 3.968 18 C 0.118 3.882 19 C -0.094 4.094 20 H 0.066 0.934 21 C 0.164 3.836 22 N -0.748 5.748 23 C -0.239 4.239 24 H 0.081 0.919 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.974 3.026 28 H -0.288 1.288 29 H -0.299 1.299 30 H -0.266 1.266 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.221 0.779 37 H 0.238 0.762 38 H 0.234 0.766 39 H 0.157 0.843 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.371 0.629 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 -1.537 31.311 32.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.132 0.868 4 C -0.041 4.041 5 N -0.340 5.340 6 C 0.367 3.633 7 O -0.455 6.455 8 C -0.184 4.184 9 C -0.002 4.002 10 N -0.180 5.180 11 C 0.014 3.986 12 N -0.169 5.169 13 C -0.045 4.045 14 C -0.086 4.086 15 N -0.151 5.151 16 C -0.122 4.122 17 C 0.004 3.996 18 C -0.004 4.004 19 C -0.113 4.113 20 H 0.084 0.916 21 C 0.038 3.962 22 N -0.391 5.391 23 C -0.371 4.371 24 H 0.099 0.901 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.803 3.197 28 H -0.216 1.216 29 H -0.226 1.226 30 H -0.190 1.190 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.236 0.764 37 H 0.254 0.746 38 H 0.250 0.750 39 H 0.175 0.825 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.202 0.798 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.454 -1.059 31.289 32.182 hybrid contribution 0.827 -1.228 -2.027 2.510 sum -6.628 -2.287 29.263 30.091 Atomic orbital electron populations 1.21859 0.92984 1.01807 1.03281 1.22117 0.97265 1.00284 0.91043 0.86780 1.23086 0.96626 0.86723 0.97654 1.48670 1.52708 1.14805 1.17813 1.17752 0.78841 0.81067 0.85611 1.90821 1.45622 1.40803 1.68217 1.20893 1.06753 0.95828 0.94976 1.24758 0.87362 1.00400 0.87681 1.67633 1.15831 1.24269 1.10242 1.20390 0.96124 0.89570 0.92468 1.68447 1.12727 1.28908 1.06780 1.25341 0.89436 0.86392 1.03318 1.25207 0.91049 1.02931 0.89396 1.68674 1.10964 1.24010 1.11459 1.20148 1.03852 0.92125 0.96037 1.21843 0.88186 0.97964 0.91574 1.22478 0.97666 0.98822 0.81467 1.22408 0.96224 0.97298 0.95414 0.91584 1.20819 0.96997 0.93096 0.85312 1.42648 1.79203 1.05719 1.11518 1.19661 1.34071 0.91868 0.91536 0.90117 1.25610 1.03796 0.96239 1.01661 1.69837 1.56352 1.06153 1.30020 0.85132 0.77890 0.77773 0.78928 1.21557 1.22602 1.19040 0.89570 0.92449 0.93606 0.86729 0.87928 0.76378 0.74607 0.74992 0.82505 0.89637 0.93034 0.95012 0.94866 0.79782 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.89 71.98 0.64 -1.68 16 2 C -0.09 -1.60 3.17 -9.90 -0.03 -1.63 16 3 H 0.11 1.68 7.85 -2.39 -0.02 1.66 16 4 C 0.08 1.27 4.63 86.53 0.40 1.67 16 5 N -0.61 -15.61 3.29 -812.78 -2.67 -18.28 16 6 C 0.58 17.13 7.80 86.79 0.68 17.81 16 7 O -0.57 -22.36 16.63 -3.89 -0.06 -22.43 16 8 C -0.18 -4.24 5.86 -20.00 -0.12 -4.36 16 9 C 0.17 3.38 9.47 85.42 0.81 4.19 16 10 N -0.47 -10.76 10.39 -192.76 -2.00 -12.76 16 11 C 0.25 5.80 7.60 134.96 1.03 6.82 16 12 N -0.45 -8.46 10.55 -193.10 -2.04 -10.49 16 13 C 0.14 1.07 11.21 85.13 0.95 2.02 16 14 C 0.09 0.74 11.22 85.14 0.96 1.70 16 15 N -0.44 -7.99 10.46 -187.98 -1.97 -9.96 16 16 C 0.00 0.06 6.59 40.34 0.27 0.33 16 17 C 0.03 0.79 9.68 23.05 0.22 1.01 16 18 C 0.12 3.69 6.48 86.73 0.56 4.26 16 19 C -0.09 -2.73 2.62 -9.58 -0.03 -2.75 16 20 H 0.07 2.20 7.86 -2.38 -0.02 2.18 16 21 C 0.16 5.95 5.58 86.38 0.48 6.44 16 22 N -0.75 -37.38 5.52 -343.45 -1.90 -39.28 16 23 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 24 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 25 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 26 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 27 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 29 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 30 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.04 0.85 8.13 -2.39 -0.02 0.83 16 34 H 0.12 1.11 7.32 -2.39 -0.02 1.09 16 35 H 0.10 1.30 5.64 -2.39 -0.01 1.29 16 36 H 0.22 2.85 3.56 -2.91 -0.01 2.84 16 37 H 0.24 -0.81 8.06 -2.91 -0.02 -0.83 16 38 H 0.23 -0.61 8.06 -2.91 -0.02 -0.63 16 39 H 0.16 3.97 7.75 -2.91 -0.02 3.95 16 40 H 0.09 2.58 7.94 -2.38 -0.02 2.56 16 41 H 0.05 2.04 7.81 -2.39 -0.02 2.03 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 44 H 0.37 20.32 7.67 -92.71 -0.71 19.60 16 45 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -84.72 373.28 0.13 -84.59 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.33 Total: 21.60 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 8.13 Total: 19.18 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -10.29 Total: -151.46 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -84.72 0.13 -84.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484369557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.735 kcal (2) G-P(sol) polarization free energy of solvation -84.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds