Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.91828 * 2 1 4 4 C 1.54915 * 111.00500 * 123.89774 * 2 1 3 5 5 N 1.47428 * 104.83061 * 81.06276 * 4 2 1 6 6 C 1.34776 * 125.64702 * 204.09120 * 5 4 2 7 7 O 1.21555 * 119.99554 * 174.26184 * 6 5 4 8 8 C 1.47838 * 119.99996 * 354.26812 * 6 5 4 9 9 C 1.40602 * 120.27753 * 335.23844 * 8 6 5 10 10 N 1.30817 * 121.51648 * 179.69331 * 9 8 6 11 11 C 1.33760 * 121.79922 * 0.59658 * 10 9 8 12 12 N 1.33886 * 120.61446 * 179.70309 * 11 10 9 13 13 C 1.31333 * 119.84926 * 180.02562 * 12 11 10 14 14 C 1.39761 * 120.76808 * 359.95713 * 13 12 11 15 15 N 1.31306 * 120.56465 * 0.02562 * 14 13 12 16 16 C 1.33671 * 119.69983 * 0.02562 * 15 14 13 17 17 C 1.38909 * 120.28053 * 155.52349 * 8 6 5 18 18 C 1.47019 * 108.70429 * 24.12960 * 5 4 2 19 19 C 1.54328 * 107.27137 * 358.93974 * 18 5 4 20 20 H 1.09001 * 110.72157 * 96.16780 * 19 18 5 21 21 C 1.53001 * 110.72270 * 219.26346 * 19 18 5 22 22 N 1.46496 * 109.46957 * 291.16007 * 21 19 18 23 23 C 1.36946 * 119.99753 * 179.97438 * 22 21 19 24 24 H 1.08003 * 119.99986 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99878 * 179.97438 * 23 22 21 26 26 N 1.31614 * 119.99775 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99848 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47320 * 59.99564 * 27 25 23 29 29 H 1.48497 * 109.47150 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.46686 * 299.99707 * 27 25 23 31 31 H 1.09000 * 109.47257 * 183.90560 * 1 2 3 32 32 H 1.08999 * 109.47326 * 303.90806 * 1 2 3 33 33 H 1.08998 * 109.47410 * 63.90536 * 1 2 3 34 34 H 1.08999 * 110.36522 * 322.23122 * 4 2 1 35 35 H 1.08996 * 110.46210 * 199.95176 * 4 2 1 36 36 H 1.07998 * 119.24225 * 0.02562 * 9 8 6 37 37 H 1.07995 * 119.61430 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.71491 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.99374 * 359.97085 * 17 8 6 40 40 H 1.08994 * 109.88404 * 239.52131 * 18 5 4 41 41 H 1.09001 * 110.01326 * 118.42625 * 18 5 4 42 42 H 1.09003 * 109.46544 * 51.15628 * 21 19 18 43 43 H 1.08993 * 109.47116 * 171.15383 * 21 19 18 44 44 H 0.96992 * 120.00437 * 359.97438 * 22 21 19 45 45 H 0.97008 * 120.00027 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 1.2004 5 7 2.0138 -2.2159 0.7735 6 6 1.9471 -3.2828 1.5943 7 8 1.7866 -4.3957 1.1325 8 6 2.0688 -3.0995 3.0562 9 6 2.7467 -1.9831 3.5767 10 7 2.8637 -1.7939 4.8658 11 6 2.3563 -2.6561 5.7536 12 7 2.4951 -2.4421 7.0680 13 6 1.9913 -3.2988 7.9265 14 6 1.3085 -4.4356 7.4852 15 7 1.1585 -4.6681 6.2016 16 6 1.6639 -3.8103 5.3097 17 6 1.5195 -4.0319 3.9272 18 6 2.0284 -2.2647 -0.6958 19 6 2.0861 -0.8080 -1.2022 20 1 3.1133 -0.5161 -1.4209 21 6 1.1999 -0.6284 -2.4364 22 7 1.7836 -1.3553 -3.5665 23 6 1.1604 -1.3398 -4.7859 24 1 0.2385 -0.7920 -4.9143 25 6 1.7137 -2.0281 -5.8569 26 7 2.8374 -2.6952 -5.7005 27 14 0.8641 -2.0063 -7.5203 28 1 0.7637 -0.6068 -8.0066 29 1 1.6506 -2.8121 -8.4885 30 1 -0.4978 -2.5833 -7.3881 31 1 -0.3634 -1.0253 0.0700 32 1 -0.3634 0.5733 0.8529 33 1 -0.3634 0.4520 -0.9229 34 1 1.4671 -0.6461 2.0837 35 1 3.1180 -0.5238 1.4044 36 1 3.1761 -1.2624 2.8966 37 1 2.1058 -3.1227 8.9859 38 1 0.9014 -5.1292 8.2062 39 1 0.9972 -4.9007 3.5547 40 1 1.1218 -2.7481 -1.0597 41 1 2.9049 -2.8125 -1.0421 42 1 0.2039 -1.0193 -2.2284 43 1 1.1304 0.4310 -2.6827 44 1 2.6113 -1.8476 -3.4511 45 1 3.2243 -3.1760 -6.4490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484369558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 78.840005 kcal Electronic energy + Delta-G solvation = -28740.487877 eV Core-core repulsion = 24759.287043 eV Total energy + Delta-G solvation = -3981.200834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19172 -40.57464 -38.76930 -37.91118 -35.49985 -34.80493 -33.04342 -32.39938 -31.67438 -31.19735 -29.16002 -27.12368 -26.76326 -25.61722 -25.07071 -23.36158 -23.25329 -21.98212 -20.79204 -19.64601 -19.32531 -18.41795 -18.27320 -17.09369 -16.57965 -16.45892 -15.93216 -15.82248 -15.51724 -15.34380 -14.85723 -14.44000 -14.07239 -13.85807 -13.63860 -13.53338 -13.28852 -13.18815 -13.05152 -12.71806 -12.40783 -12.30408 -12.24295 -12.17622 -11.90387 -11.70260 -11.20930 -11.04467 -10.84384 -10.61806 -10.52567 -10.37845 -10.20497 -10.02188 -9.82954 -9.70124 -9.65230 -9.26494 -8.88612 -8.71207 -6.94176 -5.77022 -3.06324 -0.58730 -0.28192 1.23937 1.91310 2.62400 2.80044 2.99487 3.43962 3.44239 3.48631 3.49171 3.49709 3.52158 3.99163 4.05965 4.16841 4.31554 4.37794 4.48969 4.56781 4.68877 4.72576 4.80864 4.98735 5.12814 5.24954 5.32216 5.33719 5.39877 5.48454 5.58128 5.70931 5.73571 5.79972 5.93514 5.97773 6.10426 6.18058 6.25757 6.31180 6.39391 6.40042 6.65094 6.78819 6.90495 7.32019 7.37331 7.68578 7.90942 8.41376 9.52645 10.09117 10.43187 11.45562 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.002135 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.941247 B =13110.192179 C =13635.860344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.095 0.905 4 C 0.090 3.910 5 N -0.606 5.606 6 C 0.574 3.426 7 O -0.521 6.521 8 C -0.169 4.169 9 C 0.181 3.819 10 N -0.455 5.455 11 C 0.270 3.730 12 N -0.418 5.418 13 C 0.113 3.887 14 C 0.073 3.927 15 N -0.404 5.404 16 C 0.019 3.981 17 C 0.036 3.964 18 C 0.117 3.883 19 C -0.101 4.101 20 H 0.088 0.912 21 C 0.164 3.836 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.187 0.813 37 H 0.185 0.815 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 2.305 28.761 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.113 0.887 4 C -0.033 4.033 5 N -0.339 5.339 6 C 0.361 3.639 7 O -0.398 6.398 8 C -0.176 4.176 9 C 0.004 3.996 10 N -0.164 5.164 11 C 0.031 3.969 12 N -0.133 5.133 13 C -0.067 4.067 14 C -0.104 4.104 15 N -0.119 5.119 16 C -0.107 4.107 17 C 0.008 3.992 18 C -0.004 4.004 19 C -0.121 4.121 20 H 0.107 0.893 21 C 0.036 3.964 22 N -0.378 5.378 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.203 0.797 37 H 0.202 0.798 38 H 0.201 0.799 39 H 0.183 0.817 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.217 0.783 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.780 2.451 28.585 28.745 hybrid contribution -0.516 -0.931 -1.089 1.523 sum -2.295 1.520 27.496 27.633 Atomic orbital electron populations 1.21796 0.93969 1.02253 1.02208 1.22352 0.96781 0.99106 0.93312 0.88672 1.22824 1.00796 0.80990 0.98677 1.48400 1.71783 1.05702 1.08059 1.17413 0.77952 0.83961 0.84546 1.90859 1.48781 1.23583 1.76565 1.21149 1.03395 0.97751 0.95297 1.23975 0.90681 0.93859 0.91096 1.67560 1.18565 1.28219 1.02040 1.20132 0.94392 0.90512 0.91895 1.68349 1.15937 1.28386 1.00602 1.24360 0.91248 0.89881 1.01212 1.24260 0.95907 0.97206 0.93062 1.68620 1.14007 1.26712 1.02544 1.20189 1.00567 0.94774 0.95167 1.21784 0.91334 0.96952 0.89109 1.22131 1.03612 0.97998 0.76630 1.22519 1.01416 0.92898 0.95227 0.89344 1.20700 0.94388 0.95626 0.85691 1.42363 1.28666 1.60289 1.06438 1.19149 1.04835 1.26110 0.87190 0.91243 1.24746 0.97574 1.00331 0.98229 1.69643 1.20140 1.37042 1.31204 0.86268 0.78591 0.77342 0.83974 1.21282 1.21699 1.21266 0.92428 0.92920 0.91122 0.90315 0.90375 0.79673 0.79765 0.79891 0.81699 0.90188 0.90671 0.95635 0.95807 0.78269 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.16 37.16 0.30 -1.24 16 2 C -0.10 -0.99 3.54 -88.47 -0.31 -1.30 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.09 0.82 4.46 -2.52 -0.01 0.81 16 5 N -0.61 -7.69 3.31 -171.63 -0.57 -8.25 16 6 C 0.57 8.00 7.65 -12.33 -0.09 7.91 16 7 O -0.52 -9.31 16.97 5.32 0.09 -9.22 16 8 C -0.17 -1.93 5.67 -104.83 -0.59 -2.52 16 9 C 0.18 1.83 9.23 -17.09 -0.16 1.67 16 10 N -0.46 -5.39 10.39 -12.28 -0.13 -5.52 16 11 C 0.27 3.18 7.60 -157.60 -1.20 1.99 16 12 N -0.42 -4.34 10.55 -12.39 -0.13 -4.47 16 13 C 0.11 0.66 11.21 -17.20 -0.19 0.47 16 14 C 0.07 0.42 11.22 -17.21 -0.19 0.22 16 15 N -0.40 -3.90 10.46 -10.77 -0.11 -4.01 16 16 C 0.02 0.21 6.59 -84.78 -0.56 -0.34 16 17 C 0.04 0.41 9.69 -38.38 -0.37 0.04 16 18 C 0.12 1.80 5.95 -3.06 -0.02 1.78 16 19 C -0.10 -1.43 2.84 -88.78 -0.25 -1.68 16 20 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 21 C 0.16 3.00 4.45 -4.04 -0.02 2.99 16 22 N -0.73 -17.81 5.48 -59.91 -0.33 -18.14 16 23 C -0.24 -6.64 9.99 -15.05 -0.15 -6.79 16 24 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 27 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.81 6.80 -51.93 -0.35 0.45 16 34 H 0.08 0.62 6.76 -51.93 -0.35 0.27 16 35 H 0.08 0.55 6.81 -51.93 -0.35 0.20 16 36 H 0.19 1.42 4.58 -52.49 -0.24 1.18 16 37 H 0.19 0.23 8.06 -52.49 -0.42 -0.19 16 38 H 0.18 0.24 8.06 -52.48 -0.42 -0.18 16 39 H 0.17 1.80 7.89 -52.49 -0.41 1.39 16 40 H 0.08 1.42 7.73 -51.93 -0.40 1.02 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.03 0.48 6.80 -51.93 -0.35 0.13 16 43 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.38 9.84 7.60 -40.82 -0.31 9.53 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -36.07 370.65 -9.50 -45.57 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.69 Total: 4.90 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.92 Total: 3.54 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.54 Total: -67.68 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.07 -9.50 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484369558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.409 kcal (2) G-P(sol) polarization free energy of solvation -36.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds