Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.91828 * 2 1 4 4 C 1.54915 * 111.00500 * 123.89774 * 2 1 3 5 5 N 1.47428 * 104.83061 * 81.06276 * 4 2 1 6 6 C 1.34776 * 125.64702 * 204.09120 * 5 4 2 7 7 O 1.21555 * 119.99554 * 174.26184 * 6 5 4 8 8 C 1.47838 * 119.99996 * 354.26812 * 6 5 4 9 9 C 1.40602 * 120.27753 * 335.23844 * 8 6 5 10 10 N 1.30817 * 121.51648 * 179.69331 * 9 8 6 11 11 C 1.33760 * 121.79922 * 0.59658 * 10 9 8 12 12 N 1.33886 * 120.61446 * 179.70309 * 11 10 9 13 13 C 1.31333 * 119.84926 * 180.02562 * 12 11 10 14 14 C 1.39761 * 120.76808 * 359.95713 * 13 12 11 15 15 N 1.31306 * 120.56465 * 0.02562 * 14 13 12 16 16 C 1.33671 * 119.69983 * 0.02562 * 15 14 13 17 17 C 1.38909 * 120.28053 * 155.52349 * 8 6 5 18 18 C 1.47019 * 108.70429 * 24.12960 * 5 4 2 19 19 C 1.54328 * 107.27137 * 358.93974 * 18 5 4 20 20 H 1.09001 * 110.72157 * 96.16780 * 19 18 5 21 21 C 1.53001 * 110.72270 * 219.26346 * 19 18 5 22 22 N 1.46496 * 109.46957 * 291.16007 * 21 19 18 23 23 C 1.36946 * 119.99753 * 179.97438 * 22 21 19 24 24 H 1.08003 * 119.99986 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99878 * 179.97438 * 23 22 21 26 26 N 1.31614 * 119.99775 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99848 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47320 * 59.99564 * 27 25 23 29 29 H 1.48497 * 109.47150 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.46686 * 299.99707 * 27 25 23 31 31 H 1.09000 * 109.47257 * 183.90560 * 1 2 3 32 32 H 1.08999 * 109.47326 * 303.90806 * 1 2 3 33 33 H 1.08998 * 109.47410 * 63.90536 * 1 2 3 34 34 H 1.08999 * 110.36522 * 322.23122 * 4 2 1 35 35 H 1.08996 * 110.46210 * 199.95176 * 4 2 1 36 36 H 1.07998 * 119.24225 * 0.02562 * 9 8 6 37 37 H 1.07995 * 119.61430 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.71491 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.99374 * 359.97085 * 17 8 6 40 40 H 1.08994 * 109.88404 * 239.52131 * 18 5 4 41 41 H 1.09001 * 110.01326 * 118.42625 * 18 5 4 42 42 H 1.09003 * 109.46544 * 51.15628 * 21 19 18 43 43 H 1.08993 * 109.47116 * 171.15383 * 21 19 18 44 44 H 0.96992 * 120.00437 * 359.97438 * 22 21 19 45 45 H 0.97008 * 120.00027 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 1.2004 5 7 2.0138 -2.2159 0.7735 6 6 1.9471 -3.2828 1.5943 7 8 1.7866 -4.3957 1.1325 8 6 2.0688 -3.0995 3.0562 9 6 2.7467 -1.9831 3.5767 10 7 2.8637 -1.7939 4.8658 11 6 2.3563 -2.6561 5.7536 12 7 2.4951 -2.4421 7.0680 13 6 1.9913 -3.2988 7.9265 14 6 1.3085 -4.4356 7.4852 15 7 1.1585 -4.6681 6.2016 16 6 1.6639 -3.8103 5.3097 17 6 1.5195 -4.0319 3.9272 18 6 2.0284 -2.2647 -0.6958 19 6 2.0861 -0.8080 -1.2022 20 1 3.1133 -0.5161 -1.4209 21 6 1.1999 -0.6284 -2.4364 22 7 1.7836 -1.3553 -3.5665 23 6 1.1604 -1.3398 -4.7859 24 1 0.2385 -0.7920 -4.9143 25 6 1.7137 -2.0281 -5.8569 26 7 2.8374 -2.6952 -5.7005 27 14 0.8641 -2.0063 -7.5203 28 1 0.7637 -0.6068 -8.0066 29 1 1.6506 -2.8121 -8.4885 30 1 -0.4978 -2.5833 -7.3881 31 1 -0.3634 -1.0253 0.0700 32 1 -0.3634 0.5733 0.8529 33 1 -0.3634 0.4520 -0.9229 34 1 1.4671 -0.6461 2.0837 35 1 3.1180 -0.5238 1.4044 36 1 3.1761 -1.2624 2.8966 37 1 2.1058 -3.1227 8.9859 38 1 0.9014 -5.1292 8.2062 39 1 0.9972 -4.9007 3.5547 40 1 1.1218 -2.7481 -1.0597 41 1 2.9049 -2.8125 -1.0421 42 1 0.2039 -1.0193 -2.2284 43 1 1.1304 0.4310 -2.6827 44 1 2.6113 -1.8476 -3.4511 45 1 3.2243 -3.1760 -6.4490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484369558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = 51.908417 kcal Electronic energy + Delta-G solvation = -28741.655718 eV Core-core repulsion = 24759.287043 eV Total energy + Delta-G solvation = -3982.368675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.90119 -41.57850 -39.66801 -38.94308 -36.50217 -36.17974 -34.41627 -33.20881 -32.82784 -32.42734 -30.53058 -28.11547 -27.71386 -26.57070 -26.21771 -24.87040 -24.04853 -23.31125 -21.66062 -20.55766 -20.45875 -19.33451 -19.10410 -18.82532 -17.54432 -17.43070 -16.81622 -16.74284 -16.67855 -16.23753 -15.97397 -15.61001 -15.32209 -15.30011 -14.74516 -14.59314 -14.47940 -14.09901 -14.01401 -13.82989 -13.77122 -13.28236 -13.10660 -13.01822 -12.96115 -12.88350 -12.79956 -12.67519 -12.24308 -12.02503 -11.89543 -11.64372 -11.52190 -11.43958 -11.26009 -10.90556 -10.64650 -10.35920 -9.96135 -9.80683 -8.97732 -7.94076 -5.22396 -1.29864 -0.95670 0.50038 1.16698 1.46927 1.50005 1.55946 1.60965 1.86727 2.34749 2.56421 2.76771 2.78429 2.84652 3.16695 3.32941 3.38762 3.45103 3.46674 3.60586 3.75993 3.80973 3.90927 4.14141 4.20562 4.24813 4.31175 4.33927 4.47297 4.52444 4.56274 4.65447 4.74238 4.79014 4.81921 4.94732 5.02910 5.05143 5.19460 5.21426 5.24837 5.33126 5.50432 5.50990 5.77518 6.26191 6.28195 6.29660 6.68216 6.82059 7.34580 8.11673 8.32959 9.29190 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.002135 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.941247 B =13110.192179 C =13635.860344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.129 0.871 4 C 0.086 3.914 5 N -0.601 5.601 6 C 0.574 3.426 7 O -0.574 6.574 8 C -0.174 4.174 9 C 0.187 3.813 10 N -0.471 5.471 11 C 0.253 3.747 12 N -0.454 5.454 13 C 0.135 3.865 14 C 0.092 3.908 15 N -0.436 5.436 16 C 0.004 3.996 17 C 0.031 3.969 18 C 0.125 3.875 19 C -0.092 4.092 20 H 0.094 0.906 21 C 0.164 3.836 22 N -0.747 5.747 23 C -0.243 4.243 24 H 0.076 0.924 25 C -0.078 4.078 26 N -0.969 5.969 27 Si 0.972 3.028 28 H -0.275 1.275 29 H -0.297 1.297 30 H -0.281 1.281 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.210 0.790 37 H 0.237 0.763 38 H 0.234 0.766 39 H 0.157 0.843 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.021 0.979 43 H 0.035 0.965 44 H 0.373 0.627 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 4.168 32.219 32.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.147 0.853 4 C -0.035 4.035 5 N -0.333 5.333 6 C 0.363 3.637 7 O -0.455 6.455 8 C -0.181 4.181 9 C 0.011 3.989 10 N -0.180 5.180 11 C 0.015 3.985 12 N -0.169 5.169 13 C -0.045 4.045 14 C -0.086 4.086 15 N -0.151 5.151 16 C -0.120 4.120 17 C 0.003 3.997 18 C 0.002 3.998 19 C -0.112 4.112 20 H 0.112 0.888 21 C 0.037 3.963 22 N -0.390 5.390 23 C -0.375 4.375 24 H 0.094 0.906 25 C -0.270 4.270 26 N -0.620 5.620 27 Si 0.801 3.199 28 H -0.201 1.201 29 H -0.224 1.224 30 H -0.207 1.207 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.226 0.774 37 H 0.253 0.747 38 H 0.250 0.750 39 H 0.175 0.825 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.052 0.948 44 H 0.205 0.795 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.295 4.393 32.044 32.425 hybrid contribution -0.457 -1.564 -1.853 2.468 sum -2.753 2.829 30.191 30.448 Atomic orbital electron populations 1.21796 0.94286 1.01187 1.02955 1.22405 0.96443 1.00254 0.91215 0.85291 1.23177 1.03304 0.78183 0.98846 1.48394 1.70878 1.07285 1.06715 1.17813 0.76860 0.83361 0.85652 1.90823 1.51352 1.25656 1.77646 1.20858 1.05009 0.98989 0.93250 1.24181 0.90126 0.93537 0.91028 1.67594 1.19187 1.28753 1.02471 1.20352 0.94732 0.90696 0.92750 1.68441 1.17895 1.30288 1.00278 1.25331 0.88094 0.88276 1.02836 1.25200 0.93568 0.97409 0.92382 1.68675 1.15283 1.27043 1.04091 1.20136 1.01424 0.95327 0.95124 1.21809 0.91330 0.96695 0.89866 1.21828 1.00818 0.98552 0.78614 1.22378 1.01084 0.92729 0.94961 0.88793 1.20851 0.94698 0.95054 0.85653 1.42610 1.28348 1.60748 1.07258 1.19589 1.04714 1.24832 0.88361 0.90568 1.25571 0.98593 1.00929 1.01916 1.69808 1.21856 1.38559 1.31798 0.85231 0.77439 0.77591 0.79632 1.20063 1.22365 1.20692 0.94731 0.90164 0.92086 0.88112 0.87050 0.77390 0.74668 0.75014 0.82526 0.93617 0.92973 0.96103 0.94761 0.79519 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.16 71.98 0.59 -2.26 16 2 C -0.08 -1.52 3.54 -9.40 -0.03 -1.55 16 3 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.09 1.37 4.46 86.86 0.39 1.75 16 5 N -0.60 -15.48 3.31 -815.19 -2.70 -18.18 16 6 C 0.57 16.84 7.65 86.78 0.66 17.51 16 7 O -0.57 -22.27 16.97 -3.89 -0.07 -22.34 16 8 C -0.17 -4.06 5.67 -20.00 -0.11 -4.18 16 9 C 0.19 3.60 9.23 85.42 0.79 4.39 16 10 N -0.47 -10.65 10.39 -192.75 -2.00 -12.66 16 11 C 0.25 5.70 7.60 134.96 1.03 6.73 16 12 N -0.45 -8.36 10.55 -193.11 -2.04 -10.40 16 13 C 0.13 1.03 11.21 85.14 0.95 1.98 16 14 C 0.09 0.71 11.22 85.14 0.96 1.67 16 15 N -0.44 -7.75 10.46 -187.98 -1.97 -9.72 16 16 C 0.00 0.09 6.59 40.34 0.27 0.36 16 17 C 0.03 0.73 9.69 23.05 0.22 0.95 16 18 C 0.12 4.04 5.95 86.73 0.52 4.55 16 19 C -0.09 -2.57 2.84 -9.60 -0.03 -2.60 16 20 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 21 C 0.16 6.06 4.45 86.38 0.38 6.44 16 22 N -0.75 -37.27 5.48 -343.45 -1.88 -39.15 16 23 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 24 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 25 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 26 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 27 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 28 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 30 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 31 H 0.03 0.83 7.91 -2.39 -0.02 0.81 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.31 6.80 -2.39 -0.02 1.30 16 34 H 0.10 1.27 6.76 -2.39 -0.02 1.25 16 35 H 0.11 1.14 6.81 -2.39 -0.02 1.12 16 36 H 0.21 2.71 4.58 -2.91 -0.01 2.69 16 37 H 0.24 -0.83 8.06 -2.91 -0.02 -0.86 16 38 H 0.23 -0.68 8.06 -2.91 -0.02 -0.71 16 39 H 0.16 3.80 7.89 -2.91 -0.02 3.77 16 40 H 0.05 1.78 7.73 -2.39 -0.02 1.76 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.02 0.81 6.80 -2.39 -0.02 0.79 16 43 H 0.03 1.23 8.12 -2.39 -0.02 1.21 16 44 H 0.37 19.95 7.60 -92.71 -0.70 19.25 16 45 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -84.50 370.65 -0.12 -84.62 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.34 Total: 20.00 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 7.88 Total: 18.99 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -10.30 Total: -149.93 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.07 Total: -22.34 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -84.50 -0.12 -84.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484369558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.524 kcal (2) G-P(sol) polarization free energy of solvation -84.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds