Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99775 * 2 1 4 4 N 1.46506 * 109.47034 * 125.00031 * 3 2 1 5 5 C 1.34778 * 119.99771 * 179.97438 * 4 3 2 6 6 O 1.21272 * 120.00121 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99312 * 179.97438 * 5 4 3 8 8 N 1.46908 * 109.46721 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99940 * 180.02562 * 8 7 5 10 10 H 1.08993 * 110.64066 * 39.01107 * 9 8 7 11 11 C 1.55160 * 110.71421 * 275.67953 * 9 8 7 12 12 C 1.54913 * 101.57840 * 206.13305 * 11 9 8 13 13 N 1.47432 * 104.83105 * 37.00998 * 12 11 9 14 14 C 1.34776 * 125.64805 * 155.83448 * 13 12 11 15 15 O 1.21284 * 120.00110 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99897 * 0.03835 * 14 13 12 17 17 S 1.81005 * 109.47167 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00331 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99590 * 359.97438 * 18 17 16 20 20 C 1.38793 * 120.00374 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99877 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00214 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47185 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47321 * 120.00143 * 22 20 18 25 25 H 1.48509 * 109.47129 * 239.99761 * 22 20 18 26 26 C 1.47022 * 108.70167 * 335.87189 * 13 12 11 27 27 H 1.09004 * 109.87911 * 241.63897 * 26 13 12 28 28 C 1.52996 * 110.01225 * 120.54824 * 26 13 12 29 29 H 1.08001 * 120.00094 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99878 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.99878 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47646 * 4.99879 * 3 2 1 33 33 H 1.09006 * 109.47033 * 244.99409 * 3 2 1 34 34 H 0.96998 * 119.99855 * 359.97438 * 4 3 2 35 35 H 1.08994 * 109.47469 * 299.99934 * 7 5 4 36 36 H 1.09001 * 109.47455 * 60.00562 * 7 5 4 37 37 H 1.00899 * 110.99910 * 303.95344 * 8 7 5 38 38 H 1.08996 * 111.00526 * 324.20445 * 11 9 8 39 39 H 1.09002 * 111.00706 * 88.06438 * 11 9 8 40 40 H 1.08994 * 110.37017 * 278.17468 * 12 11 9 41 41 H 1.08998 * 110.36677 * 155.84269 * 12 11 9 42 42 H 1.09000 * 109.47732 * 300.00317 * 16 14 13 43 43 H 1.09002 * 109.46910 * 60.00415 * 16 14 13 44 44 H 0.96994 * 120.00281 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.47544 * 295.73835 * 28 26 13 46 46 H 1.09003 * 109.47002 * 55.73756 * 28 26 13 47 47 H 1.08999 * 109.47412 * 175.73788 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4087 1.3329 6 8 3.7157 3.3551 0.5773 7 6 4.7354 2.4364 2.4971 8 7 5.4700 3.7086 2.4971 9 6 6.4145 3.7712 3.6205 10 1 6.8881 2.8023 3.7787 11 6 5.7014 4.2552 4.9107 12 6 6.8770 4.8868 5.6974 13 7 7.7161 5.5303 4.6701 14 6 8.5625 6.5583 4.8781 15 8 9.2055 7.0108 3.9546 16 6 8.7099 7.1455 6.2581 17 16 9.9105 8.4993 6.2126 18 6 9.8873 8.9860 7.9059 19 1 9.2477 8.4705 8.6072 20 6 10.6901 10.0323 8.3384 21 7 11.4692 10.6608 7.4836 22 14 10.6659 10.5478 10.1337 23 1 9.7136 9.6890 10.8825 24 1 12.0264 10.3983 10.7099 25 1 10.2383 11.9663 10.2357 26 6 7.4761 4.8653 3.3810 27 1 8.3996 4.4130 3.0196 28 6 6.9579 5.8780 2.3580 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6214 1.4026 -0.9314 34 1 3.0446 0.5747 1.7356 35 1 4.1773 2.3396 3.4283 36 1 5.4401 1.6096 2.4082 37 1 5.9441 3.8524 1.6181 38 1 4.9404 5.0007 4.6803 39 1 5.2714 3.4162 5.4577 40 1 7.4421 4.1149 6.2198 41 1 6.5055 5.6294 6.4034 42 1 7.7459 7.5255 6.5963 43 1 9.0581 6.3746 6.9456 44 1 12.0305 11.3918 7.7859 45 1 5.9876 6.2560 2.6801 46 1 7.6620 6.7063 2.2778 47 1 6.8549 5.3935 1.3870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507275767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = -37.861295 kcal Electronic energy + Delta-G solvation = -26512.705197 eV Core-core repulsion = 22629.595015 eV Total energy + Delta-G solvation = -3883.110182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.39432 -39.85147 -37.70864 -36.32007 -34.91129 -33.30757 -32.40874 -31.62076 -30.90115 -28.83288 -27.57323 -25.82250 -25.46914 -24.63969 -22.98148 -21.18172 -20.45733 -20.27785 -19.00899 -17.78878 -17.55823 -16.86753 -16.57113 -16.47773 -16.16466 -15.47047 -15.31728 -14.96226 -14.78853 -14.65702 -14.14682 -13.88103 -13.82447 -13.64975 -13.37023 -13.19221 -13.00358 -12.54861 -12.50553 -12.39184 -12.34098 -11.85330 -11.76240 -11.62956 -11.53115 -11.07685 -11.04925 -10.99039 -10.74592 -10.72799 -10.51877 -10.03589 -9.78217 -9.52118 -9.27808 -9.05353 -8.83785 -8.45866 -8.19714 -6.47341 -6.19616 -3.89847 1.46022 2.26152 2.70850 2.95869 3.12058 3.22936 3.27546 3.32568 3.62519 3.87012 4.15831 4.18814 4.23280 4.37151 4.45867 4.48711 4.75204 4.84297 4.89607 4.98597 5.04936 5.10676 5.15607 5.19627 5.24819 5.25695 5.41539 5.47557 5.55453 5.58767 5.68877 5.79614 5.83240 5.90783 5.91226 6.00145 6.08141 6.16306 6.17927 6.44468 6.53650 6.65045 6.92862 7.06450 7.61835 7.73586 7.82302 8.37519 8.62439 9.25757 10.87910 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035386 B = 0.001653 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.080496 B =16937.872033 C =17356.878964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.733 5.733 5 C 0.511 3.489 6 O -0.521 6.521 7 C 0.041 3.959 8 N -0.659 5.659 9 C 0.077 3.923 10 H 0.061 0.939 11 C -0.121 4.121 12 C 0.100 3.900 13 N -0.620 5.620 14 C 0.550 3.450 15 O -0.513 6.513 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.140 3.860 27 H 0.071 0.929 28 C -0.156 4.156 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.401 0.599 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.356 0.644 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.399 -26.026 -10.294 34.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.387 5.387 5 C 0.297 3.703 6 O -0.395 6.395 7 C -0.092 4.092 8 N -0.294 5.294 9 C -0.033 4.033 10 H 0.079 0.921 11 C -0.160 4.160 12 C -0.024 4.024 13 N -0.358 5.358 14 C 0.339 3.661 15 O -0.387 6.387 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.035 3.965 27 H 0.089 0.911 28 C -0.214 4.214 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.235 0.765 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.179 0.821 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.764 -24.074 -11.934 33.355 hybrid contribution -0.158 -1.381 2.265 2.658 sum -19.923 -25.455 -9.669 33.739 Atomic orbital electron populations 1.24018 0.95814 1.02554 0.97772 1.22997 0.96258 0.98054 1.02414 1.20397 0.91836 0.95597 0.89791 1.45979 1.41462 1.20160 1.31063 1.20646 0.81187 0.82099 0.86404 1.90749 1.67415 1.34716 1.46620 1.21839 0.96647 0.92814 0.97895 1.60359 1.30581 1.31449 1.07038 1.22588 0.91705 0.97233 0.91776 0.92139 1.22858 0.97569 1.01089 0.94479 1.22293 0.91178 0.97282 0.91612 1.48501 1.43587 1.34592 1.09112 1.19993 0.77637 0.77757 0.90758 1.90693 1.44425 1.59164 1.44410 1.23510 1.06205 1.04504 0.95474 1.85404 1.49910 1.34625 1.13455 1.22903 1.29829 1.21336 0.94173 0.90907 1.24986 0.94574 0.95296 0.98718 1.70029 1.24320 1.21578 1.34352 0.86122 0.78048 0.78474 0.82872 1.19625 1.20585 1.20572 1.21449 0.96707 0.92741 0.85576 0.91076 1.21996 1.02287 0.99723 0.97389 0.87812 0.88072 0.86684 0.90976 0.90646 0.76503 0.87859 0.92151 0.82147 0.89293 0.90359 0.91453 0.90100 0.89321 0.89390 0.92254 0.91560 0.90869 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 14.32 29.01 0.42 -0.12 16 2 C -0.18 -0.64 9.63 -36.03 -0.35 -0.98 16 3 C 0.15 0.82 6.11 -5.19 -0.03 0.78 16 4 N -0.73 -3.83 5.55 -61.47 -0.34 -4.17 16 5 C 0.51 4.15 7.87 -10.99 -0.09 4.06 16 6 O -0.52 -6.63 16.20 5.56 0.09 -6.54 16 7 C 0.04 0.24 6.02 -4.97 -0.03 0.21 16 8 N -0.66 -5.73 5.13 -106.05 -0.54 -6.27 16 9 C 0.08 0.67 3.10 -65.88 -0.20 0.47 16 10 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 11 C -0.12 -1.02 6.60 -24.58 -0.16 -1.18 16 12 C 0.10 1.07 6.69 -2.52 -0.02 1.06 16 13 N -0.62 -9.11 3.08 -163.02 -0.50 -9.62 16 14 C 0.55 10.80 7.65 -10.99 -0.08 10.72 16 15 O -0.51 -11.98 14.69 5.55 0.08 -11.90 16 16 C -0.15 -3.05 5.16 36.00 0.19 -2.87 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.14 1.74 3.40 -66.96 -0.23 1.51 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 C -0.16 -2.11 8.31 37.16 0.31 -1.80 16 29 H 0.10 0.22 8.06 -52.49 -0.42 -0.20 16 30 H 0.10 0.33 7.84 -52.49 -0.41 -0.08 16 31 H 0.12 0.28 8.06 -52.49 -0.42 -0.15 16 32 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.40 0.95 8.46 -40.82 -0.35 0.61 16 35 H 0.10 0.47 8.05 -51.93 -0.42 0.05 16 36 H 0.06 0.25 8.09 -51.93 -0.42 -0.17 16 37 H 0.36 3.39 6.40 -39.29 -0.25 3.14 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 42 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 46 H 0.07 1.23 6.59 -51.93 -0.34 0.89 16 47 H 0.06 0.70 6.63 -51.93 -0.34 0.36 16 LS Contribution 401.48 15.07 6.05 6.05 Total: -1.00 -37.09 401.48 -9.24 -46.34 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.49 Total: 0.30 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.65 Total: -45.70 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.17 Total: -18.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.09 -9.24 -46.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507275767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.474 kcal (2) G-P(sol) polarization free energy of solvation -37.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds