Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99775 * 2 1 4 4 N 1.46506 * 109.47034 * 125.00031 * 3 2 1 5 5 C 1.34778 * 119.99771 * 179.97438 * 4 3 2 6 6 O 1.21272 * 120.00121 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99312 * 179.97438 * 5 4 3 8 8 N 1.46908 * 109.46721 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99940 * 180.02562 * 8 7 5 10 10 H 1.08993 * 110.64066 * 39.01107 * 9 8 7 11 11 C 1.55160 * 110.71421 * 275.67953 * 9 8 7 12 12 C 1.54913 * 101.57840 * 206.13305 * 11 9 8 13 13 N 1.47432 * 104.83105 * 37.00998 * 12 11 9 14 14 C 1.34776 * 125.64805 * 155.83448 * 13 12 11 15 15 O 1.21284 * 120.00110 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99897 * 0.03835 * 14 13 12 17 17 S 1.81005 * 109.47167 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00331 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99590 * 359.97438 * 18 17 16 20 20 C 1.38793 * 120.00374 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99877 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00214 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47185 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47321 * 120.00143 * 22 20 18 25 25 H 1.48509 * 109.47129 * 239.99761 * 22 20 18 26 26 C 1.47022 * 108.70167 * 335.87189 * 13 12 11 27 27 H 1.09004 * 109.87911 * 241.63897 * 26 13 12 28 28 C 1.52996 * 110.01225 * 120.54824 * 26 13 12 29 29 H 1.08001 * 120.00094 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99878 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.99878 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47646 * 4.99879 * 3 2 1 33 33 H 1.09006 * 109.47033 * 244.99409 * 3 2 1 34 34 H 0.96998 * 119.99855 * 359.97438 * 4 3 2 35 35 H 1.08994 * 109.47469 * 299.99934 * 7 5 4 36 36 H 1.09001 * 109.47455 * 60.00562 * 7 5 4 37 37 H 1.00899 * 110.99910 * 303.95344 * 8 7 5 38 38 H 1.08996 * 111.00526 * 324.20445 * 11 9 8 39 39 H 1.09002 * 111.00706 * 88.06438 * 11 9 8 40 40 H 1.08994 * 110.37017 * 278.17468 * 12 11 9 41 41 H 1.08998 * 110.36677 * 155.84269 * 12 11 9 42 42 H 1.09000 * 109.47732 * 300.00317 * 16 14 13 43 43 H 1.09002 * 109.46910 * 60.00415 * 16 14 13 44 44 H 0.96994 * 120.00281 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.47544 * 295.73835 * 28 26 13 46 46 H 1.09003 * 109.47002 * 55.73756 * 28 26 13 47 47 H 1.08999 * 109.47412 * 175.73788 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4087 1.3329 6 8 3.7157 3.3551 0.5773 7 6 4.7354 2.4364 2.4971 8 7 5.4700 3.7086 2.4971 9 6 6.4145 3.7712 3.6205 10 1 6.8881 2.8023 3.7787 11 6 5.7014 4.2552 4.9107 12 6 6.8770 4.8868 5.6974 13 7 7.7161 5.5303 4.6701 14 6 8.5625 6.5583 4.8781 15 8 9.2055 7.0108 3.9546 16 6 8.7099 7.1455 6.2581 17 16 9.9105 8.4993 6.2126 18 6 9.8873 8.9860 7.9059 19 1 9.2477 8.4705 8.6072 20 6 10.6901 10.0323 8.3384 21 7 11.4692 10.6608 7.4836 22 14 10.6659 10.5478 10.1337 23 1 9.7136 9.6890 10.8825 24 1 12.0264 10.3983 10.7099 25 1 10.2383 11.9663 10.2357 26 6 7.4761 4.8653 3.3810 27 1 8.3996 4.4130 3.0196 28 6 6.9579 5.8780 2.3580 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6214 1.4026 -0.9314 34 1 3.0446 0.5747 1.7356 35 1 4.1773 2.3396 3.4283 36 1 5.4401 1.6096 2.4082 37 1 5.9441 3.8524 1.6181 38 1 4.9404 5.0007 4.6803 39 1 5.2714 3.4162 5.4577 40 1 7.4421 4.1149 6.2198 41 1 6.5055 5.6294 6.4034 42 1 7.7459 7.5255 6.5963 43 1 9.0581 6.3746 6.9456 44 1 12.0305 11.3918 7.7859 45 1 5.9876 6.2560 2.6801 46 1 7.6620 6.7063 2.2778 47 1 6.8549 5.3935 1.3870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507275767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = -66.034437 kcal Electronic energy + Delta-G solvation = -26513.926876 eV Core-core repulsion = 22629.595015 eV Total energy + Delta-G solvation = -3884.331861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37963 -40.64736 -38.92813 -36.82694 -35.79357 -34.58728 -33.75300 -32.69891 -31.90678 -30.13877 -28.32569 -27.65029 -26.56189 -25.30759 -24.04069 -21.69754 -21.24260 -20.79655 -20.29839 -19.55127 -18.29341 -17.93960 -17.48696 -17.08117 -17.00150 -16.88642 -16.65559 -16.10283 -15.90100 -15.70888 -15.55612 -14.73995 -14.60242 -14.50951 -14.39975 -14.22760 -14.05007 -13.71526 -13.53093 -13.37891 -13.16357 -13.13079 -13.05720 -12.91363 -12.70820 -12.56846 -12.39822 -12.04651 -11.85260 -11.71136 -11.62373 -11.15825 -11.06382 -10.83667 -10.47814 -10.27306 -10.03031 -9.70197 -9.39442 -8.67849 -8.34671 -6.13333 1.17583 1.24298 1.41751 1.44985 1.57139 1.59424 1.68161 2.04455 2.27129 2.34103 2.99592 3.19629 3.24916 3.41749 3.65457 3.83623 3.89063 3.94506 4.06172 4.16357 4.22733 4.28808 4.33921 4.42179 4.43808 4.48791 4.54890 4.58667 4.63768 4.67802 4.77247 4.79791 5.00636 5.02279 5.05925 5.27405 5.32834 5.39672 5.41792 5.50289 5.65135 5.78704 5.95946 6.19981 6.24893 6.43425 6.62552 7.06454 7.15567 7.31316 8.74989 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035386 B = 0.001653 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.080496 B =16937.872033 C =17356.878964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.145 3.855 4 N -0.717 5.717 5 C 0.506 3.494 6 O -0.577 6.577 7 C 0.045 3.955 8 N -0.677 5.677 9 C 0.094 3.906 10 H 0.091 0.909 11 C -0.110 4.110 12 C 0.088 3.912 13 N -0.612 5.612 14 C 0.545 3.455 15 O -0.563 6.563 16 C -0.118 4.118 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.132 3.868 27 H 0.066 0.934 28 C -0.145 4.145 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.418 0.582 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.349 0.651 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.271 0.729 45 H 0.058 0.942 46 H 0.031 0.969 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.412 -29.519 -7.957 37.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.022 3.978 4 N -0.371 5.371 5 C 0.294 3.706 6 O -0.456 6.456 7 C -0.086 4.086 8 N -0.311 5.311 9 C -0.016 4.016 10 H 0.108 0.892 11 C -0.149 4.149 12 C -0.034 4.034 13 N -0.347 5.347 14 C 0.334 3.666 15 O -0.442 6.442 16 C -0.270 4.270 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.200 1.200 26 C 0.028 3.972 27 H 0.084 0.916 28 C -0.203 4.203 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.255 0.745 35 H 0.145 0.855 36 H 0.109 0.891 37 H 0.170 0.830 38 H 0.092 0.908 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.051 0.949 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.840 -27.667 -9.567 36.524 hybrid contribution 0.345 -0.417 1.433 1.532 sum -21.495 -28.084 -8.134 36.290 Atomic orbital electron populations 1.24173 0.95852 1.03113 0.96994 1.22951 0.96252 0.97458 1.03038 1.20355 0.91613 0.96391 0.89448 1.45874 1.40294 1.20002 1.30893 1.21142 0.81366 0.81731 0.86407 1.90733 1.69216 1.36876 1.48731 1.21933 0.96585 0.92393 0.97705 1.60319 1.30637 1.33631 1.06563 1.22496 0.90526 0.96674 0.91889 0.89162 1.22856 0.96065 1.01848 0.94092 1.22704 0.91760 0.97782 0.91119 1.48451 1.42020 1.32820 1.11386 1.19767 0.78397 0.78869 0.89604 1.90676 1.46907 1.61215 1.45397 1.23300 1.04387 1.02140 0.97130 1.85609 1.53406 1.38745 1.14776 1.23226 1.30195 1.21801 0.94033 0.89874 1.26143 0.93795 0.95066 1.04131 1.70196 1.25327 1.22291 1.37046 0.84887 0.78570 0.78213 0.76147 1.17883 1.19847 1.19990 1.21671 0.98095 0.93347 0.84095 0.91569 1.21857 1.00530 0.98945 0.99014 0.86277 0.88568 0.85008 0.92597 0.91945 0.74490 0.85467 0.89117 0.82970 0.90792 0.86318 0.88978 0.90076 0.87807 0.87424 0.91995 0.92312 0.94944 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 14.32 67.78 0.97 0.17 16 2 C -0.18 -0.95 9.63 25.64 0.25 -0.70 16 3 C 0.15 1.52 6.11 85.63 0.52 2.04 16 4 N -0.72 -6.08 5.55 -466.78 -2.59 -8.67 16 5 C 0.51 7.38 7.87 87.66 0.69 8.07 16 6 O -0.58 -14.74 16.20 -3.00 -0.05 -14.79 16 7 C 0.05 0.38 6.02 85.56 0.52 0.89 16 8 N -0.68 -10.10 5.13 -489.44 -2.51 -12.61 16 9 C 0.09 1.32 3.10 46.10 0.14 1.46 16 10 H 0.09 0.81 7.93 -2.39 -0.02 0.80 16 11 C -0.11 -1.40 6.60 31.99 0.21 -1.19 16 12 C 0.09 1.61 6.69 86.85 0.58 2.19 16 13 N -0.61 -17.35 3.08 -788.05 -2.43 -19.78 16 14 C 0.55 21.78 7.65 87.66 0.67 22.45 16 15 O -0.56 -27.73 14.69 -3.04 -0.04 -27.78 16 16 C -0.12 -4.94 5.16 71.24 0.37 -4.58 16 17 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 18 C -0.54 -31.58 9.50 67.95 0.65 -30.94 16 19 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.81 13.22 21.65 0.29 -56.52 16 22 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C 0.13 3.15 3.40 45.34 0.15 3.31 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 C -0.15 -4.07 8.31 71.98 0.60 -3.47 16 29 H 0.12 0.23 8.06 -2.91 -0.02 0.21 16 30 H 0.10 0.55 7.84 -2.91 -0.02 0.53 16 31 H 0.13 0.28 8.06 -2.91 -0.02 0.25 16 32 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.42 0.64 8.46 -92.71 -0.78 -0.14 16 35 H 0.13 0.49 8.05 -2.39 -0.02 0.47 16 36 H 0.09 0.27 8.09 -2.39 -0.02 0.25 16 37 H 0.35 6.19 6.40 -89.69 -0.57 5.61 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.51 7.47 -2.39 -0.02 1.49 16 42 H 0.10 3.98 7.85 -2.39 -0.02 3.96 16 43 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 44 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 45 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 46 H 0.03 1.16 6.59 -2.39 -0.02 1.15 16 47 H 0.08 1.84 6.63 -2.39 -0.02 1.83 16 Total: -1.00 -86.96 401.48 -0.07 -87.03 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -0.38 Total: 16.06 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 6.78 Total: 0.94 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -7.25 Total: -97.59 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.09 Total: -42.57 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -86.96 -0.07 -87.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507275767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.000 kcal (2) G-P(sol) polarization free energy of solvation -86.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds